Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004708

Physical Location & Seq

Genomic Coordinates Forward (+)

13086578 .. 13090390

Gene Structure 3813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G100600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGTCCATAAACCACTTTTCCTCAGACCACCCAGAAACCCAGTGGTGGCCTAACACTGCCCACCAACAACAACAAGACCCCTCCAGACCCCATTTCCTCCCTCAATTTTATCAAGACACCCACCACCACAATTACCAGGCGTGGCTCAACTCCCAAGAACAACCCACACCCATGTCCCCTACTCCTCCCACCCCCACCACCCTCAATTTCAATCTCAACCAAAACGACGCCGAATCAGACCACGCCAACCAACTACAGCACCACCTCCTCCTCCAATCCTCCCCGCCGCTCGACGACCACGACGAGGAGAACGAGCCCATGTTCGAGAAGCCCTTAACCCCTAGCGACGTCGGGAAGCTGAACCGCCTTGTCATCCCCAAGCAGCACGCGGAGAAATATTTCCCACTCGGTGGGGGCGACTCAGGGCTCCTGCTGAGTTTCGAGGACGAGTCGGGTAAGTCCTGGCGCTTCCGCTACTCCTACTGGAACAGCAGCCAGAGTTACGTCCTCACCAAAGGGTGGAGCCGCTACGTCAAGGAGAAGCGCCTCGACGCCGGCGACGTCGTTTTGTTCGAGCGCCGCCGCTCACACACCGACCGCCTCTTCATAGGCTGGAGGCGCCGCTCCGCTGCCGCCACTCCCTCGGCTCACGATAGCGGGCCTGGCGCTACGCAGGTTAACGGAGGAGCGGGCGAGAGCAGCGGCAGCGGCAGCGCGGGGGGCTGGACCAGGATGTTCTATTCTGCGCCGCATCATAATAGTAGTGATGGTGGTTCGTCTTATCCTGCGCACCAGTATCATAATCATAGTGCGGCGCCATACCCACCTGACTGTCTTCATGCAGCAGGGTCTGGTGTCCAGAACATGAGTCAAACGACGTCGTCGGTTGGGAGCTCGAAGATACTGAGGCTGTTTGGGGTGAACTTGGAGTGCCAGCAGCAGGCTGACCACGAGTCCGAGCCATCCACACCCGATGGCTCGTCGTCTTTGTCCATGTCATCGAGCCAGGGTCCAACCCCACACCACCACTTGTACCCCCGAGCTGCTTATGACTATGCTGCAGACCAGAGGGATTTCAGTTTCTCCCGAGATGGGAACCCCATGAGAAATCGCCGAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009965 GO:0010016 GO:0010073 GO:0010358 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048507 GO:0048519 GO:0048523 GO:0048532 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

374

Amino Acids

41.66

Weight (kDa)

6.22

Isoelectric Point (pI)

62.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36080 AT2G36080 AT2G36080 AT2G36080 AT3G11580 AT3G11580 AT3G11580 AT3G11580 AT3G11580 AT5G06250 AT5G06250 AT5G06250 AT5G06250 AT5G06250
fragaria_vesca	FvH4_6g19560 FvH4_6g19560
malus_domestica	MD12G1032000.v1.1 MD14G1032300.v1.1
prunus_persica	Prupe.7G100600_v2.0.a1
pyrus_communis	pycom12g02970 pycom14g02910
rosa_chinensis	RchiOBHm_Chr3g0474911
rosa_laevigata	RLG00000023881
rosa_multiflora	Rmu_sc0008866.1_g000008
rosa_roxburghii	Rroxscaffold_6G00406740
rosa_rugosa	Rorug03G0145500
rosa_samantha	Rh3AG195000 Rh3BG224900 Rh3CG219900 Rh3DG220400
rosa_wichuraiana	Rw3G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	351, 564, 881
Acc16I	TGCGCA	1 cut(s)	789
Acc36I	ACCTGC	1 cut(s)	664
AccB1I	GGYRCC	2 cut(s)	618, 814
AccB7I	CCANNNNNTGG	2 cut(s)	410, 519
AccBSI	CCGCTC	4 cut(s)	289, 585, 624, 689
AccII	CGCG	2 cut(s)	389, 716
AcyI	GRCGYC	7 cut(s)	228, 348, 552, 561, 619, 815, 878
AdeI	CACNNNGTG	1 cut(s)	410
AfaI	GTAC	1 cut(s)	1034
AfiI	CCNNNNNNNGG	6 cut(s)	45, 304, 410, 519, 940, 1092
AgsI	TTSAA	1 cut(s)	211
AhdI	GACNNNNNGTC	1 cut(s)	952
AjnI	CCWGG	5 cut(s)	135, 461, 661, 728, 1005
AluBI	AGCT	3 cut(s)	358, 894, 1043
AluI	AGCT	3 cut(s)	358, 894, 1043
Alw21I	GWGCWC	1 cut(s)	896
AlwNI	CAGNNNCTG	1 cut(s)	851
Ama87I	CYCGRG	2 cut(s)	1038, 1086
AoxI	GGCC	2 cut(s)	47, 659
Asp700I	GAANNNNTTC	1 cut(s)	398
AspLEI	GCGC	9 cut(s)	468, 546, 579, 621, 668, 716, 748, 790, 817
AspS9I	GGNCC	3 cut(s)	659, 726, 1010
AsuHPI	GGTGA	2 cut(s)	502, 931
AvaI	CYCGRG	2 cut(s)	1038, 1086
AvaII	GGWCC	2 cut(s)	726, 1010
BanI	GGYRCC	2 cut(s)	618, 814
BanII	GRGCYC	3 cut(s)	318, 429, 896
BauI	CACGAG	1 cut(s)	950
BbsI	GAAGAC	1 cut(s)	827
Bbv12I	GWGCWC	1 cut(s)	896
BccI	CCATC	4 cut(s)	761, 968, 970, 1085
BciT130I	CCWGG	5 cut(s)	137, 463, 663, 730, 1007
BfaI	CTAG	1 cut(s)	342
BfmI	CTRYAG	2 cut(s)	254, 1059
BfoI	RGCGCY	6 cut(s)	469, 547, 580, 622, 669, 818
BfuAI	ACCTGC	1 cut(s)	664
Bme1390I	CCNGG	5 cut(s)	137, 463, 663, 730, 1007
Bme18I	GGWCC	2 cut(s)	726, 1010
BmeRI	GACNNNNNGTC	1 cut(s)	952
BmeT110I	CYCGRG	2 cut(s)	1038, 1086
BmgT120I	GGNCC	3 cut(s)	659, 726, 1010
BmiI	GGNNCC	6 cut(s)	428, 524, 620, 816, 1011, 1097
BmrFI	CCNGG	5 cut(s)	137, 463, 663, 730, 1007
BmrI	ACTGGG	1 cut(s)	34
BmsI	GCATC	1 cut(s)	760
BmuI	ACTGGG	1 cut(s)	34
BpiI	GAAGAC	1 cut(s)	827
BpmI	CTGGAG	2 cut(s)	67, 634
BsaHI	GRCGYC	7 cut(s)	228, 348, 552, 561, 619, 815, 878
BsaJI	CCNNGG	3 cut(s)	642, 1006, 1114
Bsc4I	CCNNNNNNNGG	6 cut(s)	45, 304, 410, 519, 940, 1092
Bse118I	RCCGGY	1 cut(s)	554
Bse1I	ACTGG	3 cut(s)	40, 488, 793
BseBI	CCWGG	5 cut(s)	137, 463, 663, 730, 1007
BseDI	CCNNGG	3 cut(s)	642, 1006, 1114
BseGI	GGATG	3 cut(s)	372, 738, 962
BseLI	CCNNNNNNNGG	6 cut(s)	45, 304, 410, 519, 940, 1092
BseMII	CTCAG	4 cut(s)	36, 425, 435, 896
BseNI	ACTGG	3 cut(s)	40, 488, 793
BseRI	GAGGAG	5 cut(s)	174, 257, 260, 320, 699
Bsh1236I	CGCG	2 cut(s)	389, 716
Bsh1285I	CGRYCG	1 cut(s)	598
BshFI	GGCC	2 cut(s)	49, 661
BshNI	GGYRCC	2 cut(s)	618, 814
BsiEI	CGRYCG	1 cut(s)	598
BsiHKAI	GWGCWC	1 cut(s)	896
BsiHKCI	CYCGRG	2 cut(s)	1038, 1086
BsiSI	CCGG	1 cut(s)	555
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	6 cut(s)	45, 304, 410, 519, 940, 1092
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	2 cut(s)	49, 661
BsoBI	CYCGRG	2 cut(s)	1038, 1086
Bsp1286I	GDGCHC	3 cut(s)	318, 429, 896
BspANI	GGCC	2 cut(s)	49, 661
BspCNI	CTCAG	4 cut(s)	35, 426, 434, 897
BspFNI	CGCG	2 cut(s)	389, 716
BspLI	GGNNCC	6 cut(s)	428, 524, 620, 816, 1011, 1097
BspMAI	CTGCAG	1 cut(s)	1063
BspMI	ACCTGC	1 cut(s)	664
BspT107I	GGYRCC	2 cut(s)	618, 814
BsrBI	CCGCTC	4 cut(s)	289, 585, 624, 689
BsrFI	RCCGGY	1 cut(s)	554
BsrI	ACTGG	3 cut(s)	40, 488, 793
BssAI	RCCGGY	1 cut(s)	554
BssECI	CCNNGG	3 cut(s)	642, 1006, 1114
BssNI	GRCGYC	7 cut(s)	228, 348, 552, 561, 619, 815, 878
BssSI	CACGAG	1 cut(s)	950
Bst2BI	CACGAG	1 cut(s)	950
Bst2UI	CCWGG	5 cut(s)	137, 463, 663, 730, 1007
Bst4CI	ACNGT	1 cut(s)	833
Bst6I	CTCTTC	1 cut(s)	608
BstACI	GRCGYC	7 cut(s)	228, 348, 552, 561, 619, 815, 878
BstC8I	GCNNGC	6 cut(s)	387, 556, 659, 691, 935, 942
BstDEI	CTNAG	4 cut(s)	22, 421, 434, 905
BstF5I	GGATG	3 cut(s)	372, 738, 962
BstFNI	CGCG	2 cut(s)	389, 716
BstH2I	RGCGCY	6 cut(s)	469, 547, 580, 622, 669, 818
BstHHI	GCGC	9 cut(s)	468, 546, 579, 621, 668, 716, 748, 790, 817
BstMCI	CGRYCG	1 cut(s)	598
BstMWI	GCNNNNNNNGC	7 cut(s)	618, 663, 699, 705, 708, 711, 720
BstNI	CCWGG	5 cut(s)	137, 463, 663, 730, 1007
BstSCI	CCNGG	5 cut(s)	135, 461, 661, 728, 1005
BstSFI	CTRYAG	2 cut(s)	254, 1059
BstUI	CGCG	2 cut(s)	389, 716
BstV2I	GAAGAC	1 cut(s)	827
BsuRI	GGCC	2 cut(s)	49, 661
BtsCI	GGATG	3 cut(s)	372, 738, 962
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	2 cut(s)	47, 54
BveI	ACCTGC	1 cut(s)	664
Cac8I	GCNNGC	6 cut(s)	387, 556, 659, 691, 935, 942
CaiI	CAGNNNCTG	1 cut(s)	851
CfoI	GCGC	9 cut(s)	468, 546, 579, 621, 668, 716, 748, 790, 817
Cfr10I	RCCGGY	1 cut(s)	554
Cfr13I	GGNCC	3 cut(s)	659, 726, 1010
CseI	GACGC	2 cut(s)	236, 560
Csp6I	GTAC	1 cut(s)	1033
CviAII	CATG	6 cut(s)	172, 319, 839, 865, 994, 1102
CviQI	GTAC	1 cut(s)	1033
DdeI	CTNAG	4 cut(s)	22, 421, 434, 905
DinI	GGCGCC	2 cut(s)	620, 816
DraIII	CACNNNGTG	1 cut(s)	410
DriI	GACNNNNNGTC	1 cut(s)	952
Eam1104I	CTCTTC	1 cut(s)	608
Eam1105I	GACNNNNNGTC	1 cut(s)	952
EarI	CTCTTC	1 cut(s)	608
Ecl136II	GAGCTC	1 cut(s)	894
Eco24I	GRGCYC	3 cut(s)	318, 429, 896
Eco47I	GGWCC	2 cut(s)	726, 1010
Eco53kI	GAGCTC	1 cut(s)	894
Eco88I	CYCGRG	2 cut(s)	1038, 1086
EcoICRI	GAGCTC	1 cut(s)	894
EcoRII	CCWGG	5 cut(s)	135, 461, 661, 728, 1005
EcoT38I	GRGCYC	3 cut(s)	318, 429, 896
EgeI	GGCGCC	2 cut(s)	620, 816
EheI	GGCGCC	2 cut(s)	620, 816
FaeI	CATG	6 cut(s)	175, 322, 842, 868, 997, 1105
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	6 cut(s)	171, 318, 838, 864, 993, 1101
FauI	CCCGC	4 cut(s)	291, 650, 682, 709
FokI	GGATG	3 cut(s)	359, 745, 949
FriOI	GRGCYC	3 cut(s)	318, 429, 896
FspBI	CTAG	1 cut(s)	342
FspI	TGCGCA	1 cut(s)	789
GlaI	GCGC	9 cut(s)	467, 545, 578, 620, 667, 715, 747, 789, 816
GsuI	CTGGAG	2 cut(s)	67, 634
HaeII	RGCGCY	6 cut(s)	469, 547, 580, 622, 669, 818
HaeIII	GGCC	2 cut(s)	49, 661
HapII	CCGG	1 cut(s)	555
HgaI	GACGC	2 cut(s)	236, 560
HhaI	GCGC	9 cut(s)	468, 546, 579, 621, 668, 716, 748, 790, 817
Hin1I	GRCGYC	7 cut(s)	228, 348, 552, 561, 619, 815, 878
Hin1II	CATG	6 cut(s)	175, 322, 842, 868, 997, 1105
Hin6I	GCGC	9 cut(s)	466, 544, 577, 619, 666, 714, 746, 788, 815
HinP1I	GCGC	9 cut(s)	466, 544, 577, 619, 666, 714, 746, 788, 815
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HinfI	GANTC	5 cut(s)	233, 419, 449, 868, 953
HpaI	GTTAAC	1 cut(s)	679
HpaII	CCGG	1 cut(s)	555
HphI	GGTGA	2 cut(s)	502, 931
Hpy166II	GTNNAC	2 cut(s)	679, 922
Hpy188I	TCNGA	3 cut(s)	25, 238, 958
Hpy188III	TCNNGA	7 cut(s)	84, 113, 325, 352, 650, 859, 1086
Hpy8I	GTNNAC	2 cut(s)	679, 922
HpyCH4III	ACNGT	1 cut(s)	833
HpyCH4IV	ACGT	5 cut(s)	348, 504, 531, 561, 878
HpyCH4V	TGCA	2 cut(s)	842, 1061
HpyF10VI	GCNNNNNNNGC	7 cut(s)	618, 663, 699, 705, 708, 711, 720
HpyF3I	CTNAG	4 cut(s)	22, 421, 434, 905
HpySE526I	ACGT	5 cut(s)	348, 504, 531, 561, 878
Hsp92I	GRCGYC	7 cut(s)	228, 348, 552, 561, 619, 815, 878
Hsp92II	CATG	6 cut(s)	175, 322, 842, 868, 997, 1105
HspAI	GCGC	9 cut(s)	466, 544, 577, 619, 666, 714, 746, 788, 815
KasI	GGCGCC	2 cut(s)	618, 814
KroI	GCCGGC	1 cut(s)	554
KroNI	GCCGGC	1 cut(s)	556
KspAI	GTTAAC	1 cut(s)	679
LmnI	GCTCC	5 cut(s)	432, 522, 629, 686, 891
LweI	GCATC	1 cut(s)	760
MaeI	CTAG	1 cut(s)	342
MaeII	ACGT	5 cut(s)	348, 504, 531, 561, 878
MaeIII	GTNAC	1 cut(s)	500
MbiI	CCGCTC	4 cut(s)	289, 585, 624, 689
MboII	GAAGA	3 cut(s)	595, 827, 910
MhlI	GDGCHC	3 cut(s)	318, 429, 896
MluCI	AATT	3 cut(s)	104, 130, 205
Mly113I	GGCGCC	2 cut(s)	619, 815
MlyI	GAGTC	4 cut(s)	413, 458, 877, 962
MmeI	TCCRAC	1 cut(s)	1037
MreI	CGCCGGCG	1 cut(s)	554
MroNI	GCCGGC	1 cut(s)	554
MroXI	GAANNNNTTC	1 cut(s)	398
MseI	TTAA	2 cut(s)	335, 678
MslI	CAYNNNNRTG	1 cut(s)	170
MspA1I	CMGCKG	3 cut(s)	629, 702, 708
MspI	CCGG	1 cut(s)	555
MspR9I	CCNGG	5 cut(s)	137, 463, 663, 730, 1007
MvaI	CCWGG	5 cut(s)	137, 463, 663, 730, 1007
MvnI	CGCG	2 cut(s)	389, 716
MwoI	GCNNNNNNNGC	7 cut(s)	618, 663, 699, 705, 708, 711, 720
NaeI	GCCGGC	1 cut(s)	556
NarI	GGCGCC	2 cut(s)	619, 815
NgoMIV	GCCGGC	1 cut(s)	554
NlaIII	CATG	6 cut(s)	175, 322, 842, 868, 997, 1105
NlaIV	GGNNCC	6 cut(s)	428, 524, 620, 816, 1011, 1097
NmeAIII	GCCGAG	1 cut(s)	623
NsbI	TGCGCA	1 cut(s)	789
PcsI	WCGNNNNNNNCGW	7 cut(s)	297, 300, 309, 414, 555, 558, 570
PdiI	GCCGGC	1 cut(s)	556
PdmI	GAANNNNTTC	1 cut(s)	398
PfeI	GAWTC	1 cut(s)	233
PflFI	GACNNNGTC	1 cut(s)	880
PflMI	CCANNNNNTGG	2 cut(s)	410, 519
PleI	GAGTC	4 cut(s)	413, 457, 876, 961
PluTI	GGCGCC	2 cut(s)	622, 818
PpsI	GAGTC	4 cut(s)	413, 457, 876, 961
Psp124BI	GAGCTC	1 cut(s)	896
Psp6I	CCWGG	5 cut(s)	135, 461, 661, 728, 1005
PspGI	CCWGG	5 cut(s)	135, 461, 661, 728, 1005
PspN4I	GGNNCC	6 cut(s)	428, 524, 620, 816, 1011, 1097
PspPI	GGNCC	3 cut(s)	659, 726, 1010
PstI	CTGCAG	1 cut(s)	1063
PstNI	CAGNNNCTG	1 cut(s)	851
PsyI	GACNNNGTC	1 cut(s)	880
RsaI	GTAC	1 cut(s)	1034
RsaNI	GTAC	1 cut(s)	1033
RseI	CAYNNNNRTG	1 cut(s)	170
SacI	GAGCTC	1 cut(s)	896
SaqAI	TTAA	2 cut(s)	335, 678
Sau96I	GGNCC	3 cut(s)	659, 726, 1010
SchI	GAGTC	4 cut(s)	413, 458, 877, 962
ScrFI	CCNGG	5 cut(s)	137, 463, 663, 730, 1007
SduI	GDGCHC	3 cut(s)	318, 429, 896
SfaNI	GCATC	1 cut(s)	760
SfcI	CTRYAG	2 cut(s)	254, 1059
SfoI	GGCGCC	2 cut(s)	620, 816
SgrAI	CRCCGGYG	1 cut(s)	554
SinI	GGWCC	2 cut(s)	726, 1010
SmiMI	CAYNNNNRTG	1 cut(s)	170
Sse9I	AATT	3 cut(s)	104, 130, 205
SspDI	GGCGCC	2 cut(s)	618, 814
SspI	AATATT	1 cut(s)	398
SspMI	CTAG	1 cut(s)	342
SstI	GAGCTC	1 cut(s)	896
StyD4I	CCNGG	5 cut(s)	135, 461, 661, 728, 1005
TaaI	ACNGT	1 cut(s)	833
TaiI	ACGT	5 cut(s)	351, 507, 534, 564, 881
TaqI	TCGA	7 cut(s)	291, 324, 441, 549, 573, 896, 1001
TasI	AATT	3 cut(s)	104, 130, 205
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	2 cut(s)	335, 678
Tru9I	TTAA	2 cut(s)	335, 678
TscAI	CASTG	2 cut(s)	47, 61
TspDTI	ATGAA	2 cut(s)	595, 827
TspGWI	ACGGA	1 cut(s)	696
TspRI	CASTG	2 cut(s)	47, 61
Tth111I	GACNNNGTC	1 cut(s)	880
Van91I	CCANNNNNTGG	2 cut(s)	410, 519
VpaK11BI	GGWCC	2 cut(s)	726, 1010
XcmI	CCANNNNNNNNNTGG	1 cut(s)	39
XmnI	GAANNNNTTC	1 cut(s)	398
XspI	CTAG	1 cut(s)	342
ZraI	GACGTC	3 cut(s)	349, 562, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.