Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004708

Physical Location & Seq

Genomic Coordinates Reverse (-)

3648902 .. 3651726

Gene Structure 2825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G11580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGTCAGTCAACCATTACCACAACACTCTCTCGTTGCATCATCACCACCAAAACGACGTAGCTATAGCACAACGAGAGTCTTTGTTCGAGAAATCACTCACACCAAGCGACGTCGGAAAGCTAAACCGCTTAGTCATACCAAAACAACACGCCGAGAAATACTTCCCTCTCAATAATAATAATAATAATGGCGGCAGCGGAGATGACGTGGCGACGACGGAGAAAGGGATGCTTCTTAGCTTCGAGGATGAGTCAGGCAAGTGTTGGAAATTCAGATACTCTTATTGGAACAGTAGCCAAAGCTACGTGTTGACCAAAGGATGGAGCAGGTACGTCAAAGACAAACACCTCGACGCAGGCGACGTTGTTTTCTTTCAACGTCACCGTTTTGATCTCCATAGACTCTTCATTGGCTGGCGGAGACGCGGTGAAGCTTCTTCCTCTCCCGCTGTCTCCGTTGTGTCTCAAGAAGCTCTAGTTAATACGACGGCGTATTGGAGCGGCTTGACTACACCTTATCGTCAAGTACACGCGTCAACTACTTACCCTAATATTCACCAAGAGTATTCACACTATGGCGCCGTCGTTGATCATGCTCAGTCGATACCACCGGTGGTCGCAGGTAGCTCGAGGACGGTGAGGCTTTTTGGCGTGAACCTCGAATGTCATGGTGATGCCGTCGAGCCACCACCGCGTCCTGATGTCTATAATGACCAACACATTTACTATTACTCAACTCCTCATCCCATGAATATATCATTTGCTGGGGAAGCATTGGAGCAGGTAGGAGATGGACGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009965 GO:0009987 GO:0010016 GO:0010073 GO:0010358 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048507 GO:0048519 GO:0048523 GO:0048532 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071704 GO:0080050 GO:0080090 GO:0080113 GO:0097159 GO:0099402 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

267

Amino Acids

30.22

Weight (kDa)

6.78

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	29 - 142	8.3e-25	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36080 AT2G36080 AT2G36080 AT2G36080 AT3G11580 AT3G11580 AT3G11580 AT3G11580 AT3G11580 AT5G06250 AT5G06250 AT5G06250 AT5G06250 AT5G06250
fragaria_vesca	FvH4_6g19560 FvH4_6g19560
malus_domestica	MD12G1032000.v1.1 MD14G1032300.v1.1
prunus_persica	Prupe.7G100600_v2.0.a1
pyrus_communis	pycom12g02970 pycom14g02910
rosa_chinensis	RchiOBHm_Chr3g0474911
rosa_laevigata	RLG00000023881
rosa_multiflora	Rmu_sc0008866.1_g000008
rosa_roxburghii	Rroxscaffold_6G00406740
rosa_rugosa	Rorug03G0145500
rosa_samantha	Rh3AG195000 Rh3BG224900 Rh3CG219900 Rh3DG220400
rosa_wichuraiana	Rw3G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	114
Acc36I	ACCTGC	3 cut(s)	318, 611, 772
AccB1I	GGYRCC	1 cut(s)	578
AccB7I	CCANNNNNTGG	1 cut(s)	321
AccBSI	CCGCTC	1 cut(s)	501
AccII	CGCG	3 cut(s)	426, 533, 694
AciI	CCGC	8 cut(s)	127, 192, 198, 418, 426, 447, 501, 692
AcsI	RAATTY	1 cut(s)	269
AcyI	GRCGYC	2 cut(s)	111, 579
AfaI	GTAC	2 cut(s)	332, 528
AfiI	CCNNNNNNNGG	1 cut(s)	321
AflIII	ACRYGT	2 cut(s)	306, 531
AgeI	ACCGGT	1 cut(s)	610
AgsI	TTSAA	1 cut(s)	377
AjiI	CACGTC	1 cut(s)	208
AluBI	AGCT	7 cut(s)	62, 121, 240, 303, 434, 473, 627
AluI	AGCT	7 cut(s)	62, 121, 240, 303, 434, 473, 627
Alw26I	GTCTC	3 cut(s)	415, 457, 468
Ama87I	CYCGRG	1 cut(s)	628
ApeKI	GCWGC	1 cut(s)	195
ApoI	RAATTY	1 cut(s)	269
AsiGI	ACCGGT	1 cut(s)	610
Asp700I	GAANNNNTTC	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	581
AsuHPI	GGTGA	6 cut(s)	35, 374, 440, 548, 649, 683
AvaI	CYCGRG	1 cut(s)	628
BanI	GGYRCC	1 cut(s)	578
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	2 cut(s)	315, 785
BceAI	ACGGC	3 cut(s)	504, 566, 662
BcgI	CGANNNNNNTGC	2 cut(s)	609, 643
BclI	TGATCA	1 cut(s)	589
BcoDI	GTCTC	3 cut(s)	415, 457, 468
BfaI	CTAG	1 cut(s)	476
BfmI	CTRYAG	1 cut(s)	63
BfoI	RGCGCY	1 cut(s)	582
BfuAI	ACCTGC	3 cut(s)	318, 611, 772
BisI	GCNGC	3 cut(s)	193, 196, 502
BlsI	GCNGC	3 cut(s)	194, 197, 503
BmeT110I	CYCGRG	1 cut(s)	628
BmgBI	CACGTC	1 cut(s)	208
BmiI	GGNNCC	1 cut(s)	580
BmsI	GCATC	3 cut(s)	46, 219, 664
BpuEI	CTTGAG	1 cut(s)	450
BsaAI	YACGTR	1 cut(s)	307
BsaHI	GRCGYC	2 cut(s)	111, 579
BsaWI	WCCGGW	1 cut(s)	610
BsaXI	ACNNNNNCTCC	4 cut(s)	192, 222, 412, 442
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse118I	RCCGGY	1 cut(s)	610
BseGI	GGATG	4 cut(s)	234, 253, 326, 742
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	611
BseRI	GAGGAG	1 cut(s)	729
BseXI	GCAGC	1 cut(s)	207
BseYI	CCCAGC	1 cut(s)	764
Bsh1236I	CGCG	3 cut(s)	426, 533, 694
BshNI	GGYRCC	1 cut(s)	578
BshTI	ACCGGT	1 cut(s)	610
BsiHKCI	CYCGRG	1 cut(s)	628
BsiSI	CCGG	1 cut(s)	611
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmAI	GTCTC	3 cut(s)	415, 457, 468
BsmBI	CGTCTC	1 cut(s)	415
BsoBI	CYCGRG	1 cut(s)	628
Bsp143I	GATC	2 cut(s)	391, 589
BspACI	CCGC	8 cut(s)	127, 192, 198, 418, 426, 447, 501, 692
BspCNI	CTCAG	1 cut(s)	610
BspFNI	CGCG	3 cut(s)	426, 533, 694
BspLI	GGNNCC	1 cut(s)	580
BspMI	ACCTGC	3 cut(s)	318, 611, 772
BspT107I	GGYRCC	1 cut(s)	578
BsrBI	CCGCTC	1 cut(s)	501
BsrFI	RCCGGY	1 cut(s)	610
BssAI	RCCGGY	1 cut(s)	610
BssMI	GATC	2 cut(s)	391, 589
BssNI	GRCGYC	2 cut(s)	111, 579
Bst4CI	ACNGT	3 cut(s)	293, 386, 637
Bst6I	CTCTTC	1 cut(s)	410
BstACI	GRCGYC	2 cut(s)	111, 579
BstBAI	YACGTR	1 cut(s)	307
BstC8I	GCNNGC	2 cut(s)	358, 416
BstDEI	CTNAG	3 cut(s)	130, 236, 597
BstF5I	GGATG	4 cut(s)	234, 253, 326, 742
BstFNI	CGCG	3 cut(s)	426, 533, 694
BstH2I	RGCGCY	1 cut(s)	582
BstHHI	GCGC	1 cut(s)	581
BstKTI	GATC	2 cut(s)	394, 592
BstMAI	GTCTC	3 cut(s)	415, 457, 468
BstMBI	GATC	2 cut(s)	391, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	691, 770
BstSFI	CTRYAG	1 cut(s)	63
BstUI	CGCG	3 cut(s)	426, 533, 694
BstV1I	GCAGC	1 cut(s)	207
BtrI	CACGTC	1 cut(s)	208
BtsCI	GGATG	4 cut(s)	234, 253, 326, 742
BveI	ACCTGC	3 cut(s)	318, 611, 772
Cac8I	GCNNGC	2 cut(s)	358, 416
CfoI	GCGC	1 cut(s)	581
Cfr10I	RCCGGY	1 cut(s)	610
CseI	GACGC	4 cut(s)	362, 432, 522, 683
Csp6I	GTAC	2 cut(s)	331, 527
CspAI	ACCGGT	1 cut(s)	610
CviAII	CATG	3 cut(s)	593, 668, 748
CviQI	GTAC	2 cut(s)	331, 527
DdeI	CTNAG	3 cut(s)	130, 236, 597
DinI	GGCGCC	1 cut(s)	580
DpnI	GATC	2 cut(s)	393, 591
DpnII	GATC	2 cut(s)	391, 589
Eam1104I	CTCTTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	410
EciI	GGCGGA	1 cut(s)	433
Eco88I	CYCGRG	1 cut(s)	628
EgeI	GGCGCC	1 cut(s)	580
EheI	GGCGCC	1 cut(s)	580
Esp3I	CGTCTC	1 cut(s)	415
FaeI	CATG	3 cut(s)	596, 671, 751
FaiI	YATR	9 cut(s)	65, 137, 399, 576, 594, 669, 708, 749, 755
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FatI	CATG	3 cut(s)	592, 667, 747
FauI	CCCGC	1 cut(s)	454
FbaI	TGATCA	1 cut(s)	589
Fnu4HI	GCNGC	3 cut(s)	193, 196, 502
FokI	GGATG	4 cut(s)	241, 260, 333, 729
Fsp4HI	GCNGC	3 cut(s)	193, 196, 502
FspBI	CTAG	1 cut(s)	476
GlaI	GCGC	1 cut(s)	580
GluI	GCNGC	3 cut(s)	193, 196, 502
GsaI	CCCAGC	1 cut(s)	768
HaeII	RGCGCY	1 cut(s)	582
HapII	CCGG	1 cut(s)	611
HgaI	GACGC	4 cut(s)	362, 432, 522, 683
HhaI	GCGC	1 cut(s)	581
Hin1I	GRCGYC	2 cut(s)	111, 579
Hin1II	CATG	3 cut(s)	596, 671, 751
Hin6I	GCGC	1 cut(s)	579
HinP1I	GCGC	1 cut(s)	579
HincII	GTYRAC	3 cut(s)	10, 312, 537
HindII	GTYRAC	3 cut(s)	10, 312, 537
HindIII	AAGCTT	1 cut(s)	432
HinfI	GANTC	3 cut(s)	77, 251, 402
HpaII	CCGG	1 cut(s)	611
HphI	GGTGA	6 cut(s)	35, 374, 440, 548, 649, 683
Hpy166II	GTNNAC	5 cut(s)	10, 312, 529, 537, 655
Hpy188I	TCNGA	2 cut(s)	116, 275
Hpy188III	TCNNGA	3 cut(s)	88, 467, 698
Hpy8I	GTNNAC	5 cut(s)	10, 312, 529, 537, 655
HpyCH4III	ACNGT	3 cut(s)	293, 386, 637
HpyCH4IV	ACGT	7 cut(s)	57, 111, 207, 306, 333, 363, 379
HpyCH4V	TGCA	1 cut(s)	37
HpyF10VI	GCNNNNNNNGC	2 cut(s)	691, 770
HpyF3I	CTNAG	3 cut(s)	130, 236, 597
HpySE526I	ACGT	7 cut(s)	57, 111, 207, 306, 333, 363, 379
Hsp92I	GRCGYC	2 cut(s)	111, 579
Hsp92II	CATG	3 cut(s)	596, 671, 751
HspAI	GCGC	1 cut(s)	579
KasI	GGCGCC	1 cut(s)	578
Ksp22I	TGATCA	1 cut(s)	589
Kzo9I	GATC	2 cut(s)	391, 589
LmnI	GCTCC	3 cut(s)	324, 498, 778
LpnPI	CCDG	9 cut(s)	240, 313, 342, 400, 606, 624, 711, 750, 767
Lsp1109I	GCAGC	1 cut(s)	207
LweI	GCATC	3 cut(s)	46, 219, 664
MaeI	CTAG	1 cut(s)	476
MaeII	ACGT	7 cut(s)	57, 111, 207, 306, 333, 363, 379
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	2 cut(s)	393, 591
MbiI	CCGCTC	1 cut(s)	501
MboI	GATC	2 cut(s)	391, 589
MboII	GAAGA	2 cut(s)	397, 429
MluCI	AATT	1 cut(s)	269
MluI	ACGCGT	1 cut(s)	531
Mly113I	GGCGCC	1 cut(s)	579
MlyI	GAGTC	3 cut(s)	86, 260, 396
MmeI	TCCRAC	2 cut(s)	94, 245
MnlI	CCTC	9 cut(s)	177, 238, 359, 451, 624, 633, 668, 750, 791
MroXI	GAANNNNTTC	1 cut(s)	161
MseI	TTAA	1 cut(s)	480
MslI	CAYNNNNRTG	1 cut(s)	672
MspA1I	CMGCKG	2 cut(s)	198, 449
MspI	CCGG	1 cut(s)	611
MvnI	CGCG	3 cut(s)	426, 533, 694
MwoI	GCNNNNNNNGC	2 cut(s)	691, 770
NarI	GGCGCC	1 cut(s)	579
NdeII	GATC	2 cut(s)	391, 589
NlaIII	CATG	3 cut(s)	596, 671, 751
NlaIV	GGNNCC	1 cut(s)	580
NmeAIII	GCCGAG	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	380
PaeR7I	CTCGAG	1 cut(s)	628
PcsI	WCGNNNNNNNCGW	2 cut(s)	357, 360
PdmI	GAANNNNTTC	1 cut(s)	161
PflMI	CCANNNNNTGG	1 cut(s)	321
PinAI	ACCGGT	1 cut(s)	610
PkrI	GCNGC	3 cut(s)	194, 197, 503
PleI	GAGTC	3 cut(s)	85, 259, 396
PluTI	GGCGCC	1 cut(s)	582
PpsI	GAGTC	3 cut(s)	85, 259, 396
Ppu21I	YACGTR	1 cut(s)	307
PspFI	CCCAGC	1 cut(s)	764
PspN4I	GGNNCC	1 cut(s)	580
PspXI	VCTCGAGB	1 cut(s)	628
RsaI	GTAC	2 cut(s)	332, 528
RsaNI	GTAC	2 cut(s)	331, 527
RseI	CAYNNNNRTG	1 cut(s)	672
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	3 cut(s)	193, 196, 502
Sau3AI	GATC	2 cut(s)	391, 589
SchI	GAGTC	3 cut(s)	86, 260, 396
SfaNI	GCATC	3 cut(s)	46, 219, 664
SfcI	CTRYAG	1 cut(s)	63
SfoI	GGCGCC	1 cut(s)	580
Sfr274I	CTCGAG	1 cut(s)	628
SgrAI	CRCCGGYG	1 cut(s)	610
SlaI	CTCGAG	1 cut(s)	628
SmiMI	CAYNNNNRTG	1 cut(s)	672
SmlI	CTYRAG	2 cut(s)	465, 628
SmoI	CTYRAG	2 cut(s)	465, 628
Sse9I	AATT	1 cut(s)	269
SsiI	CCGC	8 cut(s)	127, 192, 198, 418, 426, 447, 501, 692
SspDI	GGCGCC	1 cut(s)	578
SspI	AATATT	1 cut(s)	553
SspMI	CTAG	1 cut(s)	476
TaaI	ACNGT	3 cut(s)	293, 386, 637
TaiI	ACGT	7 cut(s)	60, 114, 210, 309, 336, 366, 382
TaqI	TCGA	7 cut(s)	87, 243, 351, 602, 629, 660, 681
TasI	AATT	1 cut(s)	269
TatI	WGTACW	1 cut(s)	526
TauI	GCSGC	2 cut(s)	195, 504
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	1 cut(s)	195
Tsp45I	GTSAC	1 cut(s)	380
TspDTI	ATGAA	2 cut(s)	397, 764
TspGWI	ACGGA	2 cut(s)	233, 445
Van91I	CCANNNNNTGG	1 cut(s)	321
XapI	RAATTY	1 cut(s)	269
XhoI	CTCGAG	1 cut(s)	628
XmnI	GAANNNNTTC	1 cut(s)	161
XspI	CTAG	1 cut(s)	476
ZraI	GACGTC	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.