Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004708

Physical Location & Seq

Genomic Coordinates Reverse (-)

1891880 .. 1894353

Gene Structure 2474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06250.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGTCAGTCAACCATTACTCCACAGACCACCACCACACTCTCTTGTGGCAGCAACAGCAACACCGCCACACCACCGACACATCGGAGACAACCACCACCGCCACATGGCTCCACGACGACCTAAAAGAGTCACTCTTCGAGAAGTCTCTCACACCAAGCGACGTCGGGAAACTCAACCGCCTCGTCATACCAAAACAACACGCAGAGAAATACTTCCCTCTCAATGCCGTCCTAGTCTCCTCTGCTGCTGCTGACACGTCATCTTCGGAGAAAGGGATGCTTCTAAGCTTTGAAGACGAGTCAGGCAAGTCATGGAGGTTCAGATACTCTTACTGGAACAGCAGTCAAAGCTATGTCTTGACTAAAGGATGGAGCAGATTTGTCAAAGACAAACAGCTCGATCCAGGCGACGTTGTTTTCTTCCAACGACACCGTTCTGATTCTAGGAGACTCTTCATTGGCTGGCGCAGACGTGGACAAGGCTCCTCATCCTCCGTCGCGGCCACTAACTCCGCCGTGAATACGAGTTCTATGGGAGCTCTTTCTTATCATCAAATCCACGCCACTAGAGCCGCCGTAGCAACAGCGGCTGAGACTCACAGCACACCGTCGTCTTCCGTCGTCGGGAGCTCAAGGACGGTGAGGCTTTTCGGTGTGAATCTGGAGTGTCAAATGGATGAAAACGACGGAGATGATTCTGTTGCAGTTGCCACCACCGTTGAATCTCCCGACGGTTACTACGGCCAAAACATGTACTATTATTACTCTCATCCTCATAACATGGTAATTTTAACTCTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009965 GO:0009987 GO:0010016 GO:0010073 GO:0010358 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048507 GO:0048519 GO:0048523 GO:0048532 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071704 GO:0080050 GO:0080090 GO:0080113 GO:0097159 GO:0099402 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

267

Amino Acids

30.0

Weight (kDa)

6.7

Isoelectric Point (pI)

49.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	46 - 158	3.9e-28	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36080 AT2G36080 AT2G36080 AT2G36080 AT3G11580 AT3G11580 AT3G11580 AT3G11580 AT3G11580 AT5G06250 AT5G06250 AT5G06250 AT5G06250 AT5G06250
fragaria_vesca	FvH4_6g19560 FvH4_6g19560
malus_domestica	MD12G1032000.v1.1 MD14G1032300.v1.1
prunus_persica	Prupe.7G100600_v2.0.a1
pyrus_communis	pycom12g02970 pycom14g02910
rosa_chinensis	RchiOBHm_Chr3g0474911
rosa_laevigata	RLG00000023881
rosa_multiflora	Rmu_sc0008866.1_g000008
rosa_roxburghii	Rroxscaffold_6G00406740
rosa_rugosa	Rorug03G0145500
rosa_samantha	Rh3AG195000 Rh3BG224900 Rh3CG219900 Rh3DG220400
rosa_wichuraiana	Rw3G017740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	802
AatII	GACGTC	1 cut(s)	165
AccII	CGCG	1 cut(s)	500
AciI	CCGC	7 cut(s)	64, 99, 178, 500, 513, 573, 587
AclWI	GGATC	1 cut(s)	395
AcoI	YGGCCR	2 cut(s)	501, 742
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	1 cut(s)	755
AfiI	CCNNNNNNNGG	2 cut(s)	105, 624
AflIII	ACRYGT	2 cut(s)	255, 750
AgsI	TTSAA	2 cut(s)	293, 722
AjiI	CACGTC	2 cut(s)	258, 473
AjnI	CCWGG	1 cut(s)	403
AluBI	AGCT	5 cut(s)	288, 351, 397, 539, 630
AluI	AGCT	5 cut(s)	288, 351, 397, 539, 630
Alw21I	GWGCWC	2 cut(s)	541, 632
Alw26I	GTCTC	5 cut(s)	80, 150, 241, 442, 587
AlwI	GGATC	1 cut(s)	395
AlwNI	CAGNNNCTG	1 cut(s)	590
AoxI	GGCC	2 cut(s)	501, 742
ApeKI	GCWGC	3 cut(s)	49, 245, 248
Asp700I	GAANNNNTTC	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	468
AsuHPI	GGTGA	1 cut(s)	652
BanII	GRGCYC	2 cut(s)	541, 632
BbsI	GAAGAC	2 cut(s)	300, 606
Bbv12I	GWGCWC	2 cut(s)	541, 632
BbvI	GCAGC	3 cut(s)	61, 232, 235
BccI	CCATC	1 cut(s)	363
BceAI	ACGGC	4 cut(s)	212, 500, 560, 757
BciT130I	CCWGG	1 cut(s)	405
BcoDI	GTCTC	5 cut(s)	80, 150, 241, 442, 587
BfaI	CTAG	3 cut(s)	233, 444, 567
BisI	GCNGC	6 cut(s)	50, 246, 249, 501, 573, 588
BlsI	GCNGC	6 cut(s)	51, 247, 250, 502, 574, 589
Bme1390I	CCNGG	1 cut(s)	405
BmgBI	CACGTC	2 cut(s)	258, 473
BmiI	GGNNCC	2 cut(s)	110, 484
BmrFI	CCNGG	1 cut(s)	405
BmsI	GCATC	1 cut(s)	267
BpiI	GAAGAC	2 cut(s)	300, 606
BpmI	CTGGAG	1 cut(s)	683
BpuEI	CTTGAG	1 cut(s)	616
BsaHI	GRCGYC	1 cut(s)	162
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 624
Bse1I	ACTGG	1 cut(s)	338
BseBI	CCWGG	1 cut(s)	405
BseGI	GGATG	5 cut(s)	282, 374, 488, 682, 769
BseLI	CCNNNNNNNGG	2 cut(s)	105, 624
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	1 cut(s)	338
BseRI	GAGGAG	2 cut(s)	229, 475
BseXI	GCAGC	3 cut(s)	61, 232, 235
Bsh1236I	CGCG	1 cut(s)	500
BshFI	GGCC	2 cut(s)	503, 744
BsiHKAI	GWGCWC	2 cut(s)	541, 632
BslI	CCNNNNNNNGG	2 cut(s)	105, 624
BsmAI	GTCTC	5 cut(s)	80, 150, 241, 442, 587
BsnI	GGCC	2 cut(s)	503, 744
Bsp1286I	GDGCHC	2 cut(s)	541, 632
Bsp143I	GATC	1 cut(s)	400
BspACI	CCGC	7 cut(s)	64, 99, 178, 500, 513, 573, 587
BspANI	GGCC	2 cut(s)	503, 744
BspCNI	CTCAG	1 cut(s)	583
BspFNI	CGCG	1 cut(s)	500
BspLI	GGNNCC	2 cut(s)	110, 484
BspPI	GGATC	1 cut(s)	395
BsrI	ACTGG	1 cut(s)	338
BssMI	GATC	1 cut(s)	400
BssNI	GRCGYC	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	5 cut(s)	434, 609, 640, 718, 734
Bst6I	CTCTTC	2 cut(s)	140, 458
BstACI	GRCGYC	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	464
BstDEI	CTNAG	2 cut(s)	284, 591
BstF5I	GGATG	5 cut(s)	282, 374, 488, 682, 769
BstFNI	CGCG	1 cut(s)	500
BstHHI	GCGC	1 cut(s)	468
BstKTI	GATC	1 cut(s)	403
BstMAI	GTCTC	5 cut(s)	80, 150, 241, 442, 587
BstMBI	GATC	1 cut(s)	400
BstMWI	GCNNNNNNNGC	5 cut(s)	55, 348, 569, 578, 587
BstNI	CCWGG	1 cut(s)	405
BstNSI	RCATGY	1 cut(s)	754
BstSCI	CCNGG	1 cut(s)	403
BstUI	CGCG	1 cut(s)	500
BstV1I	GCAGC	3 cut(s)	61, 232, 235
BstV2I	GAAGAC	2 cut(s)	300, 606
BsuRI	GGCC	2 cut(s)	503, 744
BtrI	CACGTC	2 cut(s)	258, 473
BtsCI	GGATG	5 cut(s)	282, 374, 488, 682, 769
Cac8I	GCNNGC	1 cut(s)	464
CaiI	CAGNNNCTG	1 cut(s)	590
CfoI	GCGC	1 cut(s)	468
Csp6I	GTAC	1 cut(s)	754
CspCI	CAANNNNNGTGG	2 cut(s)	700, 735
CviAII	CATG	4 cut(s)	105, 312, 751, 781
CviQI	GTAC	1 cut(s)	754
DdeI	CTNAG	2 cut(s)	284, 591
DpnI	GATC	1 cut(s)	402
DpnII	GATC	1 cut(s)	400
EaeI	YGGCCR	2 cut(s)	501, 742
Eam1104I	CTCTTC	2 cut(s)	140, 458
EarI	CTCTTC	2 cut(s)	140, 458
EciI	GGCGGA	1 cut(s)	502
Ecl136II	GAGCTC	2 cut(s)	539, 630
Eco24I	GRGCYC	2 cut(s)	541, 632
Eco53kI	GAGCTC	2 cut(s)	539, 630
EcoICRI	GAGCTC	2 cut(s)	539, 630
EcoRII	CCWGG	1 cut(s)	403
EcoT38I	GRGCYC	2 cut(s)	541, 632
FaeI	CATG	4 cut(s)	108, 315, 754, 784
FaiI	YATR	9 cut(s)	106, 188, 313, 354, 533, 752, 777, 782, 802
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FatI	CATG	4 cut(s)	104, 311, 750, 780
Fnu4HI	GCNGC	6 cut(s)	50, 246, 249, 501, 573, 588
FokI	GGATG	5 cut(s)	289, 381, 475, 689, 756
FriOI	GRGCYC	2 cut(s)	541, 632
Fsp4HI	GCNGC	6 cut(s)	50, 246, 249, 501, 573, 588
FspBI	CTAG	3 cut(s)	233, 444, 567
GlaI	GCGC	1 cut(s)	467
GluI	GCNGC	6 cut(s)	50, 246, 249, 501, 573, 588
GsuI	CTGGAG	1 cut(s)	683
HaeIII	GGCC	2 cut(s)	503, 744
HhaI	GCGC	1 cut(s)	468
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	4 cut(s)	108, 315, 754, 784
Hin6I	GCGC	1 cut(s)	466
HinP1I	GCGC	1 cut(s)	466
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HindIII	AAGCTT	1 cut(s)	286
HinfI	GANTC	8 cut(s)	128, 299, 440, 450, 595, 658, 695, 722
HphI	GGTGA	1 cut(s)	652
Hpy166II	GTNNAC	2 cut(s)	10, 476
Hpy188I	TCNGA	4 cut(s)	85, 268, 323, 439
Hpy188III	TCNNGA	6 cut(s)	139, 166, 358, 625, 662, 728
Hpy8I	GTNNAC	2 cut(s)	10, 476
HpyCH4III	ACNGT	5 cut(s)	434, 609, 640, 718, 734
HpyCH4IV	ACGT	4 cut(s)	162, 257, 411, 472
HpyCH4V	TGCA	1 cut(s)	704
HpyF10VI	GCNNNNNNNGC	5 cut(s)	55, 348, 569, 578, 587
HpyF3I	CTNAG	2 cut(s)	284, 591
HpySE526I	ACGT	4 cut(s)	162, 257, 411, 472
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	4 cut(s)	108, 315, 754, 784
HspAI	GCGC	1 cut(s)	466
Kzo9I	GATC	1 cut(s)	400
LmnI	GCTCC	5 cut(s)	114, 372, 488, 536, 627
LpnPI	CCDG	6 cut(s)	288, 319, 390, 417, 448, 647
Lsp1109I	GCAGC	3 cut(s)	61, 232, 235
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	3 cut(s)	233, 444, 567
MaeII	ACGT	4 cut(s)	162, 257, 411, 472
MaeIII	GTNAC	2 cut(s)	129, 734
MalI	GATC	1 cut(s)	402
MboI	GATC	1 cut(s)	400
MboII	GAAGA	6 cut(s)	127, 255, 305, 412, 445, 606
MhlI	GDGCHC	2 cut(s)	541, 632
MluCI	AATT	1 cut(s)	786
MlyI	GAGTC	4 cut(s)	137, 308, 444, 589
MmeI	TCCRAC	1 cut(s)	448
MnlI	CCTC	8 cut(s)	191, 228, 250, 309, 496, 502, 636, 783
MroXI	GAANNNNTTC	1 cut(s)	212
MseI	TTAA	1 cut(s)	791
MspA1I	CMGCKG	1 cut(s)	587
MspR9I	CCNGG	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	405
MvnI	CGCG	1 cut(s)	500
MwoI	GCNNNNNNNGC	5 cut(s)	55, 348, 569, 578, 587
NdeII	GATC	1 cut(s)	400
NlaIII	CATG	4 cut(s)	108, 315, 754, 784
NlaIV	GGNNCC	2 cut(s)	110, 484
NmuCI	GTSAC	1 cut(s)	129
NspI	RCATGY	1 cut(s)	754
PciI	ACATGT	1 cut(s)	750
PcsI	WCGNNNNNNNCGW	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	4 cut(s)	440, 658, 695, 722
PkrI	GCNGC	6 cut(s)	51, 247, 250, 502, 574, 589
PleI	GAGTC	4 cut(s)	136, 307, 444, 589
PpsI	GAGTC	4 cut(s)	136, 307, 444, 589
PscI	ACATGT	1 cut(s)	750
PsiI	TTATAA	1 cut(s)	802
Psp124BI	GAGCTC	2 cut(s)	541, 632
Psp6I	CCWGG	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	2 cut(s)	110, 484
PstNI	CAGNNNCTG	1 cut(s)	590
RsaI	GTAC	1 cut(s)	755
RsaNI	GTAC	1 cut(s)	754
SacI	GAGCTC	2 cut(s)	541, 632
SaqAI	TTAA	1 cut(s)	791
SatI	GCNGC	6 cut(s)	50, 246, 249, 501, 573, 588
Sau3AI	GATC	1 cut(s)	400
SchI	GAGTC	4 cut(s)	137, 308, 444, 589
ScrFI	CCNGG	1 cut(s)	405
SduI	GDGCHC	2 cut(s)	541, 632
SfaNI	GCATC	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	631
SmoI	CTYRAG	1 cut(s)	631
Sse9I	AATT	1 cut(s)	786
SsiI	CCGC	7 cut(s)	64, 99, 178, 500, 513, 573, 587
SspMI	CTAG	3 cut(s)	233, 444, 567
SstI	GAGCTC	2 cut(s)	541, 632
StyD4I	CCNGG	1 cut(s)	403
TaaI	ACNGT	5 cut(s)	434, 609, 640, 718, 734
TaiI	ACGT	4 cut(s)	165, 260, 414, 475
TaqI	TCGA	2 cut(s)	138, 399
TasI	AATT	1 cut(s)	786
TatI	WGTACW	1 cut(s)	753
TauI	GCSGC	3 cut(s)	503, 575, 590
TfiI	GAWTC	4 cut(s)	440, 658, 695, 722
Tru1I	TTAA	1 cut(s)	791
Tru9I	TTAA	1 cut(s)	791
TseFI	GTSAC	1 cut(s)	129
TseI	GCWGC	3 cut(s)	49, 245, 248
Tsp45I	GTSAC	1 cut(s)	129
TspDTI	ATGAA	2 cut(s)	445, 693
TspGWI	ACGGA	3 cut(s)	484, 607, 702
XceI	RCATGY	1 cut(s)	754
XmnI	GAANNNNTTC	1 cut(s)	212
XspI	CTAG	3 cut(s)	233, 444, 567
ZraI	GACGTC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.