AT2G36240

repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009624
Physical Location & Seq
Forward (+)
15195608 .. 15197332
1725 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G36240.1

Sequence Viewer

Length: 1494 bp
ATGCGATGGAACAAGAAGAACGTTATCAGTCTCGTCTCAAAGTCTCATCATCTTCCGGCGCCGATTACGCCACCGTTACCTGAGATTTACCGAATACCTAATCCTCCACCAAAGCTTCCGGAGATCTCAATTCCTCCGACACTTACGCTCTCTCCATCTCCCAAACACTCCAATTTCGTCAATTTCCTCGAGAACAATCTCCCTCACCATCAAACACTAACGCCACAAACTCTTCTTGGATTCCTCCGTTCCAAGATCCGTAACCATCCGCTCTACGCTCATTATGACTTCGCCGTCTTTAATTGGGCAGCTACACTCGACACTTTCCGTCATGATCACGATTCTTTCCTCTGGATGTCGAGATCACTCGCCGCCACGCACCGGTTTGACGATCTTTATCGTCTTCTCTCTTTTGTAGCTGCGAATCCATGTCCTTGTTCCTCAGGTATATTCTCTTGTCCAGAGCTTGAACCTATTTTCCGATCCGCCATTGATGCGTATTGTAGAGCTAGGAAAATGGATTATGCTTTGTTAGCGTTTGATACTATGAAGAGATTGATCGATGGTAAACCAAATGTTGGAGTTTATAACACTGTTGTGAATGGATATGTGAAATCTGGAGATATGGATAAGGCTTTAAGGTTTTACCAGAGGATGGGAAAGGAAAGAGCAAAGCCAGATGTATGCACGTTTAACATTCTCATCAATGGTTATTGTAGAAGCTCTAAGTTTGATTTGGCATTGGATTTGTTCAGGGAGATGAAGGAGAAAGGTTGTGAACCGAATGTGGTTAGCTTCAACACTCTTATTAGAGGGTTTTTGAGCAGTGGTAAAATCGAGGAAGGTGTTAAAATGGCTTATGAGATGATTGAGCTAGGTTGTAGATTCTCAGAAGCTACTTGTGAGATTCTTGTTGATGGGTTGTGTAGAGAAGGTCGGGTTGACGATGCTTGTGGATTGGTGCTCGATCTTTTGAACAAGAGGGTTTTACCTAGTGAGTTTGATTATGGTAGTTTGGTTGAGAAACTCTGCGGAGAAAACAAGGCGGTTAGAGCAATGGAGATGATGGAGGAGCTGTGGAAGAAAGGCCAAACCCCATGTTTCATTGCTTGTACTACACTCGTCGAAGGGTTGAGGAAATCAGGAAGAACAGAGAAAGCGTCAGGGTTTATGGAGAAGATGATGAATGCAGGAATTCTTCCCGATAGTGTGACATTTAACTTGCTTCTTCGGGATCTCTGCAGTTCTGATCATTCTACTGATGCAAACAGATTGAGACTTTTGGCATCAAGCAAAGGATATGAACCCGATGAGACAACGTACCATGTTTTGGTTTCGGGGTTCACGAAAGAAGGGAGAAGAAAGGAAGGAGAAGTTCTAGTGAACGAGATGTTGGATAAAGATATGTTGCCTGATATCTTTACATATAATAGATTGATGGATGGCTTGTCCTGCACTGGAAAATTCTCAAGGAAACAAGTCCGGATGTTGTAA

Protein Analysis

497

Amino Acids

56.36

Weight (kDa)

8.37

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 162 - 312 2.1e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 190 - 219 7.3e-06 PPR repeat
PPR_3 PF13812 190 - 238 3e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 191 - 240 4.5e-17 PPR repeat family
PPR PF01535 195 - 221 1.7e-06 PPR repeat
PPR_1 PF12854 225 - 255 3.5e-12 PPR repeat
PPR_2 PF13041 226 - 273 3.7e-20 PPR repeat family
PPR PF01535 230 - 259 1.7e-10 PPR repeat
PPR_3 PF13812 234 - 271 1.6e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 257 - 289 1.3e-06 PPR repeat
PPR_2 PF13041 261 - 310 1.9e-11 PPR repeat family
PPR_2 PF13041 366 - 414 4.2e-09 PPR repeat family
PPR_2 PF13041 436 - 484 1.5e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 588
AasI GACNNNNNNGTC 1 cut(s) 293
AccB1I GGYRCC 1 cut(s) 58
AccB7I CCANNNNNTGG 3 cut(s) 578, 655, 1330
AccBSI CCGCTC 1 cut(s) 271
AccIII TCCGGA 2 cut(s) 118, 1482
AciI CCGC 5 cut(s) 269, 372, 486, 1032, 1046
AclI AACGTT 1 cut(s) 21
AclWI GGATC 3 cut(s) 250, 477, 1242
AcsI RAATTY 2 cut(s) 1194, 1463
AcyI GRCGYC 1 cut(s) 59
AfaI GTAC 2 cut(s) 1114, 1322
AfiI CCNNNNNNNGG 4 cut(s) 381, 578, 655, 1330
AgeI ACCGGT 1 cut(s) 381
AgsI TTSAA 3 cut(s) 470, 799, 976
AjuI GAANNNNNNNTTGG 2 cut(s) 1376, 1408
AleI CACNNNNGTG 1 cut(s) 596
AloI GAACNNNNNNTCC 2 cut(s) 462, 494
Alw21I GWGCWC 1 cut(s) 966
Alw26I GTCTC 5 cut(s) 35, 40, 48, 1270, 1307
AlwI GGATC 3 cut(s) 250, 477, 1242
Ama87I CYCGRG 1 cut(s) 188
Aor13HI TCCGGA 2 cut(s) 118, 1482
AoxI GGCC 1 cut(s) 1087
ApeKI GCWGC 2 cut(s) 308, 419
ApoI RAATTY 2 cut(s) 1194, 1463
AsiGI ACCGGT 1 cut(s) 381
AspLEI GCGC 1 cut(s) 61
AsuHPI GGTGA 1 cut(s) 197
AvaI CYCGRG 1 cut(s) 188
AxyI CCTNAGG 1 cut(s) 442
BanI GGYRCC 1 cut(s) 58
BbsI GAAGAC 1 cut(s) 395
Bbv12I GWGCWC 1 cut(s) 966
BbvI GCAGC 2 cut(s) 320, 406
BccI CCATC 9 cut(s) 163, 216, 273, 557, 649, 911, 1060, 1432, 1436
BceAI ACGGC 1 cut(s) 278
BclI TGATCA 2 cut(s) 334, 1249
BcoDI GTCTC 5 cut(s) 35, 40, 48, 1270, 1307
BfaI CTAG 4 cut(s) 510, 875, 993, 1379
BfmI CTRYAG 1 cut(s) 1240
BfoI RGCGCY 1 cut(s) 62
BglII AGATCT 1 cut(s) 123
BisI GCNGC 3 cut(s) 309, 372, 420
BlsI GCNGC 3 cut(s) 310, 373, 421
BmeT110I CYCGRG 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 60
BmsI GCATC 4 cut(s) 484, 937, 1252, 1295
BpiI GAAGAC 1 cut(s) 395
BpmI CTGGAG 1 cut(s) 639
BpuEI CTTGAG 1 cut(s) 1453
Bsa29I ATCGAT 1 cut(s) 561
BsaBI GATNNNNATC 1 cut(s) 396
BsaHI GRCGYC 1 cut(s) 59
BsaWI WCCGGW 3 cut(s) 118, 381, 1482
BsaXI ACNNNNNCTCC 4 cut(s) 136, 166, 1061, 1091
Bsc4I CCNNNNNNNGG 4 cut(s) 381, 578, 655, 1330
Bse118I RCCGGY 1 cut(s) 381
Bse1I ACTGG 1 cut(s) 1462
Bse21I CCTNAGG 1 cut(s) 442
Bse3DI GCAATG 2 cut(s) 1062, 1104
Bse8I GATNNNNATC 1 cut(s) 396
BseAI TCCGGA 2 cut(s) 118, 1482
BseCI ATCGAT 1 cut(s) 561
BseGI GGATG 5 cut(s) 265, 360, 660, 1447, 1491
BseJI GATNNNNATC 1 cut(s) 396
BseLI CCNNNNNNNGG 4 cut(s) 381, 578, 655, 1330
BseMI GCAATG 2 cut(s) 1062, 1104
BseMII CTCAG 3 cut(s) 72, 456, 903
BseNI ACTGG 1 cut(s) 1462
BseRI GAGGAG 1 cut(s) 1085
BseXI GCAGC 2 cut(s) 320, 406
BsgI GTGCAG 1 cut(s) 1438
BshFI GGCC 1 cut(s) 1089
BshNI GGYRCC 1 cut(s) 58
BshTI ACCGGT 1 cut(s) 381
BshVI ATCGAT 1 cut(s) 561
BsiHKAI GWGCWC 1 cut(s) 966
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 4 cut(s) 56, 119, 382, 1483
BslI CCNNNNNNNGG 4 cut(s) 381, 578, 655, 1330
BsmAI GTCTC 5 cut(s) 35, 40, 48, 1270, 1307
BsmBI CGTCTC 1 cut(s) 40
BsmI GAATGC 1 cut(s) 1192
BsnI GGCC 1 cut(s) 1089
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 966
Bsp13I TCCGGA 2 cut(s) 118, 1482
BspACI CCGC 5 cut(s) 269, 372, 486, 1032, 1046
BspANI GGCC 1 cut(s) 1089
BspCNI CTCAG 3 cut(s) 73, 455, 902
BspDI ATCGAT 1 cut(s) 561
BspEI TCCGGA 2 cut(s) 118, 1482
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 1 cut(s) 60
BspMAI CTGCAG 1 cut(s) 1244
BspPI GGATC 3 cut(s) 250, 477, 1242
BspT107I GGYRCC 1 cut(s) 58
BsrBI CCGCTC 1 cut(s) 271
BsrDI GCAATG 2 cut(s) 1062, 1104
BsrFI RCCGGY 1 cut(s) 381
BsrI ACTGG 1 cut(s) 1462
BssAI RCCGGY 1 cut(s) 381
BssNI GRCGYC 1 cut(s) 59
Bst4CI ACNGT 2 cut(s) 75, 595
Bst6I CTCTTC 2 cut(s) 237, 545
BstACI GRCGYC 1 cut(s) 59
BstDEI CTNAG 4 cut(s) 81, 442, 726, 889
BstF5I GGATG 5 cut(s) 265, 360, 660, 1447, 1491
BstH2I RGCGCY 1 cut(s) 62
BstHHI GCGC 1 cut(s) 61
BstMAI GTCTC 5 cut(s) 35, 40, 48, 1270, 1307
BstMWI GCNNNNNNNGC 5 cut(s) 67, 494, 533, 1052, 1452
BstSFI CTRYAG 1 cut(s) 1240
BstV1I GCAGC 2 cut(s) 320, 406
BstV2I GAAGAC 1 cut(s) 395
BstX2I RGATCY 3 cut(s) 123, 255, 1234
BstYI RGATCY 3 cut(s) 123, 255, 1234
Bsu15I ATCGAT 1 cut(s) 561
Bsu36I CCTNAGG 1 cut(s) 442
BsuRI GGCC 1 cut(s) 1089
BsuTUI ATCGAT 1 cut(s) 561
BtgZI GCGATG 1 cut(s) 19
BtsCI GGATG 5 cut(s) 265, 360, 660, 1447, 1491
BtsI GCAGTG 1 cut(s) 832
BtsIMutI CAGTG 3 cut(s) 591, 832, 1455
CciI TCATGA 1 cut(s) 331
CfoI GCGC 1 cut(s) 61
Cfr10I RCCGGY 1 cut(s) 381
ClaI ATCGAT 1 cut(s) 561
CseI GACGC 1 cut(s) 1149
Csp6I GTAC 2 cut(s) 1113, 1321
CspAI ACCGGT 1 cut(s) 381
CviAII CATG 4 cut(s) 332, 429, 1098, 1325
CviQI GTAC 2 cut(s) 1113, 1321
DdeI CTNAG 4 cut(s) 81, 442, 726, 889
DinI GGCGCC 1 cut(s) 60
DrdI GACNNNNNNGTC 1 cut(s) 293
DseDI GACNNNNNNGTC 1 cut(s) 293
Eam1104I CTCTTC 2 cut(s) 237, 545
EarI CTCTTC 2 cut(s) 237, 545
EciI GGCGGA 1 cut(s) 475
Eco32I GATATC 1 cut(s) 1417
Eco81I CCTNAGG 1 cut(s) 442
Eco88I CYCGRG 1 cut(s) 188
EcoRI GAATTC 1 cut(s) 1194
EcoRV GATATC 1 cut(s) 1417
EgeI GGCGCC 1 cut(s) 60
EheI GGCGCC 1 cut(s) 60
Esp3I CGTCTC 1 cut(s) 40
FaeI CATG 4 cut(s) 335, 432, 1101, 1328
FatI CATG 4 cut(s) 331, 428, 1097, 1324
FbaI TGATCA 2 cut(s) 334, 1249
Fnu4HI GCNGC 3 cut(s) 309, 372, 420
FokI GGATG 4 cut(s) 252, 367, 667, 1454
Fsp4HI GCNGC 3 cut(s) 309, 372, 420
FspBI CTAG 4 cut(s) 510, 875, 993, 1379
GlaI GCGC 1 cut(s) 60
GluI GCNGC 3 cut(s) 309, 372, 420
GsuI CTGGAG 1 cut(s) 639
HaeII RGCGCY 1 cut(s) 62
HaeIII GGCC 1 cut(s) 1089
HapII CCGG 4 cut(s) 56, 119, 382, 1483
HgaI GACGC 1 cut(s) 1149
HhaI GCGC 1 cut(s) 61
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 4 cut(s) 335, 432, 1101, 1328
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HincII GTYRAC 1 cut(s) 943
HindII GTYRAC 1 cut(s) 943
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 5 cut(s) 240, 341, 424, 885, 907
HpaII CCGG 4 cut(s) 56, 119, 382, 1483
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 5 cut(s) 569, 779, 943, 1344, 1384
Hpy188I TCNGA 4 cut(s) 138, 482, 892, 1249
Hpy8I GTNNAC 5 cut(s) 569, 779, 943, 1344, 1384
Hpy99I CGWCG 1 cut(s) 1127
HpyAV CCTTC 6 cut(s) 757, 836, 926, 1121, 1346, 1361
HpyCH4III ACNGT 2 cut(s) 75, 595
HpyCH4IV ACGT 3 cut(s) 21, 689, 1319
HpyCH4V TGCA 5 cut(s) 687, 1190, 1242, 1265, 1455
HpyF10VI GCNNNNNNNGC 5 cut(s) 67, 494, 533, 1052, 1452
HpyF3I CTNAG 4 cut(s) 81, 442, 726, 889
HpySE526I ACGT 3 cut(s) 21, 689, 1319
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 4 cut(s) 335, 432, 1101, 1328
HspAI GCGC 1 cut(s) 59
KasI GGCGCC 1 cut(s) 58
Kpn2I TCCGGA 2 cut(s) 118, 1482
Ksp22I TGATCA 2 cut(s) 334, 1249
LmnI GCTCC 1 cut(s) 1072
Lsp1109I GCAGC 2 cut(s) 320, 406
LweI GCATC 4 cut(s) 484, 937, 1252, 1295
MaeI CTAG 4 cut(s) 510, 875, 993, 1379
MaeII ACGT 3 cut(s) 21, 689, 1319
MaeIII GTNAC 3 cut(s) 75, 260, 1210
MbiI CCGCTC 1 cut(s) 271
MflI RGATCY 3 cut(s) 123, 255, 1234
MhlI GDGCHC 1 cut(s) 966
MluCI AATT 6 cut(s) 129, 172, 181, 301, 1194, 1463
Mly113I GGCGCC 1 cut(s) 59
MmeI TCCRAC 3 cut(s) 161, 559, 1374
MroI TCCGGA 2 cut(s) 118, 1482
MseI TTAA 5 cut(s) 300, 638, 693, 849, 1218
MslI CAYNNNNRTG 1 cut(s) 596
MspI CCGG 4 cut(s) 56, 119, 382, 1483
Mva1269I GAATGC 1 cut(s) 1192
MwoI GCNNNNNNNGC 5 cut(s) 67, 494, 533, 1052, 1452
NarI GGCGCC 1 cut(s) 59
NlaIII CATG 4 cut(s) 335, 432, 1101, 1328
NlaIV GGNNCC 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 1210
OliI CACNNNNGTG 1 cut(s) 596
PaeR7I CTCGAG 1 cut(s) 188
PagI TCATGA 1 cut(s) 331
PcsI WCGNNNNNNNCGW 1 cut(s) 1343
PctI GAATGC 1 cut(s) 1192
PfeI GAWTC 5 cut(s) 240, 341, 424, 885, 907
PflMI CCANNNNNTGG 3 cut(s) 578, 655, 1330
PinAI ACCGGT 1 cut(s) 381
PkrI GCNGC 3 cut(s) 310, 373, 421
PluTI GGCGCC 1 cut(s) 62
PsiI TTATAA 1 cut(s) 588
Psp1406I AACGTT 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 60
PstI CTGCAG 1 cut(s) 1244
PsuI RGATCY 3 cut(s) 123, 255, 1234
RsaI GTAC 2 cut(s) 1114, 1322
RsaNI GTAC 2 cut(s) 1113, 1321
RseI CAYNNNNRTG 1 cut(s) 596
SaqAI TTAA 5 cut(s) 300, 638, 693, 849, 1218
SatI GCNGC 3 cut(s) 309, 372, 420
SduI GDGCHC 1 cut(s) 966
SfaNI GCATC 4 cut(s) 484, 937, 1252, 1295
SfcI CTRYAG 1 cut(s) 1240
SfoI GGCGCC 1 cut(s) 60
Sfr274I CTCGAG 1 cut(s) 188
SlaI CTCGAG 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 596
SmlI CTYRAG 2 cut(s) 188, 1468
SmoI CTYRAG 2 cut(s) 188, 1468
Sse9I AATT 6 cut(s) 129, 172, 181, 301, 1194, 1463
SsiI CCGC 5 cut(s) 269, 372, 486, 1032, 1046
SspDI GGCGCC 1 cut(s) 58
SspMI CTAG 4 cut(s) 510, 875, 993, 1379
TaaI ACNGT 2 cut(s) 75, 595
TaiI ACGT 3 cut(s) 24, 692, 1322
TaqI TCGA 7 cut(s) 189, 318, 359, 561, 837, 966, 1125
TasI AATT 6 cut(s) 129, 172, 181, 301, 1194, 1463
TatI WGTACW 1 cut(s) 1112
TauI GCSGC 1 cut(s) 374
TfiI GAWTC 5 cut(s) 240, 341, 424, 885, 907
Tru1I TTAA 5 cut(s) 300, 638, 693, 849, 1218
Tru9I TTAA 5 cut(s) 300, 638, 693, 849, 1218
TscAI CASTG 3 cut(s) 598, 832, 1462
TseFI GTSAC 1 cut(s) 1210
TseI GCWGC 2 cut(s) 308, 419
Tsp45I GTSAC 1 cut(s) 1210
TspDTI ATGAA 5 cut(s) 563, 776, 1093, 1199, 1317
TspGWI ACGGA 3 cut(s) 236, 248, 317
TspRI CASTG 3 cut(s) 598, 832, 1462
Van91I CCANNNNNTGG 3 cut(s) 578, 655, 1330
XapI RAATTY 2 cut(s) 1194, 1463
XhoI CTCGAG 1 cut(s) 188
XspI CTAG 4 cut(s) 510, 875, 993, 1379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.