Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001293.1

Orthogroup ID

OG0009624

Physical Location & Seq

Genomic Coordinates Forward (+)

59302 .. 61725

Gene Structure 2424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001293.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atgatcttcaccaaacctgtccaagttcccttgggggtggggggcggagtgatggaggatcactcgtacgacgtcgcgccgtgctcttccgatgccgtttattcaatcctcaacgtcggagcggctggtgagatttggggtttattgctacttctgcacactggaattcaaagatatcgaggaaaggatgattggtggctgttgcatggatggaaaaatagtgccttgaacttgttcgatgaaatgcgtgagagaggaatggcttgcaatgcggtcacagacaacaccctaattggtgggttgtgtcgagaaatgagggtttggggagctgagaagtttgtgaatgagatgaagagggatggtattagtccaagtatacggagccacggtggtccacgcgccatcggcggcgcgtgcagcggttctagccgaaattggatgtcggaaccagagggttttggtgaaaagggagatgctgatcccattaatggtggttgtgtagcacagatgtcgccggagacgaagaacaaggcggcggaaattgtgatgcttgcgtccagtggttgcaggcggggcctggccacattgagggtccggtttgattggatttgtgttgtggttcaattggtggtggcggtgtcaataaatggtggccggatggagtcttttccggcaataatagggatgacgagaggaaggagagaaagaagagagcgagaccagtgtggccgagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008104 GO:0008150 GO:0009526 GO:0009527 GO:0009536 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0051179 GO:0051641 GO:0070727 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

245

Amino Acids

26.76

Weight (kDa)

8.13

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36240
fragaria_vesca	FvH4_6g18780
prunus_persica	Prupe.7G109800_v2.0.a1
pyrus_communis	pycom04g01140 pycom15g30020
rosa_chinensis	RchiOBHm_Chr3g0473791
rosa_laevigata	RLG00000015254 RLG00000023984
rosa_multiflora	Rmu_co8122080.1_g000001 Rmu_sc0001293.1_g000012 Rmu_sc0007035.1_g000006 Rmu_sc0007035.1_g000008
rosa_roxburghii	Rroxscaffold_1G00029320 Rroxscaffold_6G00407800
rosa_rugosa	Rorug03G0135500
rosa_samantha	Rh3BG214200 Rh3BG214500 Rh3CG210900 Rh3CG211100 Rh3DG210100 Rh3DG210300
rosa_wichuraiana	Rw3G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	75
AccBSI	CCGCTC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	376
AccII	CGCG	3 cut(s)	77, 399, 413
AciI	CCGC	9 cut(s)	45, 122, 272, 408, 420, 533, 536, 571, 635
AclWI	GGATC	2 cut(s)	66, 473
AcoI	YGGCCR	3 cut(s)	579, 652, 727
AcsI	RAATTY	1 cut(s)	165
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	2 cut(s)	488, 588
AgsI	TTSAA	4 cut(s)	105, 170, 229, 623
AjnI	CCWGG	1 cut(s)	576
AjuI	GAANNNNNNNTTGG	2 cut(s)	175, 207
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
Alw21I	GWGCWC	1 cut(s)	86
Alw26I	GTCTC	2 cut(s)	512, 711
AlwI	GGATC	2 cut(s)	66, 473
AoxI	GGCC	4 cut(s)	574, 579, 652, 727
ApeKI	GCWGC	1 cut(s)	417
ApoI	RAATTY	1 cut(s)	165
AseI	ATTAAT	1 cut(s)	486
Asp700I	GAANNNNTTC	1 cut(s)	233
AspLEI	GCGC	3 cut(s)	79, 401, 413
AspS9I	GGNCC	3 cut(s)	392, 574, 592
AsuHPI	GGTGA	2 cut(s)	140, 473
AvaII	GGWCC	2 cut(s)	392, 592
BalI	TGGCCA	1 cut(s)	581
Bbv12I	GWGCWC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	429
BccI	CCATC	5 cut(s)	46, 204, 353, 410, 652
BceAI	ACGGC	2 cut(s)	64, 80
BcgI	CGANNNNNNTGC	2 cut(s)	492, 526
BciT130I	CCWGG	1 cut(s)	578
BcoDI	GTCTC	2 cut(s)	512, 711
BfaI	CTAG	1 cut(s)	426
BisI	GCNGC	4 cut(s)	123, 409, 418, 534
BlsI	GCNGC	4 cut(s)	124, 410, 419, 535
Bme1390I	CCNGG	1 cut(s)	578
Bme18I	GGWCC	2 cut(s)	392, 592
BmgT120I	GGNCC	3 cut(s)	392, 574, 592
BmiI	GGNNCC	4 cut(s)	383, 447, 575, 593
BmrFI	CCNGG	1 cut(s)	578
BmsI	GCATC	3 cut(s)	82, 463, 537
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
BsaBI	GATNNNNATC	1 cut(s)	477
BsaHI	GRCGYC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	711
BsaJI	CCNNGG	2 cut(s)	30, 385
BsaWI	WCCGGW	1 cut(s)	594
BsaXI	ACNNNNNCTCC	2 cut(s)	373, 403
Bsc4I	CCNNNNNNNGG	2 cut(s)	488, 588
Bse1I	ACTGG	3 cut(s)	166, 558, 721
Bse3DI	GCAATG	1 cut(s)	274
Bse8I	GATNNNNATC	1 cut(s)	477
BseBI	CCWGG	1 cut(s)	578
BseDI	CCNNGG	2 cut(s)	30, 385
BseGI	GGATG	6 cut(s)	193, 215, 364, 444, 663, 690
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	2 cut(s)	488, 588
BseMI	GCAATG	1 cut(s)	274
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	3 cut(s)	166, 558, 721
BseXI	GCAGC	1 cut(s)	429
BsgI	GTGCAG	2 cut(s)	140, 436
Bsh1236I	CGCG	3 cut(s)	77, 399, 413
BshFI	GGCC	4 cut(s)	576, 581, 654, 729
BsiHKAI	GWGCWC	1 cut(s)	86
BsiSI	CCGG	4 cut(s)	515, 595, 655, 671
BsiWI	CGTACG	1 cut(s)	66
BslI	CCNNNNNNNGG	2 cut(s)	488, 588
BsmAI	GTCTC	2 cut(s)	512, 711
BsmBI	CGTCTC	1 cut(s)	512
BsnI	GGCC	4 cut(s)	576, 581, 654, 729
Bso31I	GGTCTC	1 cut(s)	711
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp143I	GATC	3 cut(s)	3, 58, 478
BspACI	CCGC	9 cut(s)	45, 122, 272, 408, 420, 533, 536, 571, 635
BspANI	GGCC	4 cut(s)	576, 581, 654, 729
BspCNI	CTCAG	1 cut(s)	322
BspFNI	CGCG	3 cut(s)	77, 399, 413
BspLI	GGNNCC	4 cut(s)	383, 447, 575, 593
BspPI	GGATC	2 cut(s)	66, 473
BspQI	GCTCTTC	1 cut(s)	91
BspTNI	GGTCTC	1 cut(s)	711
BsrBI	CCGCTC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	274
BsrI	ACTGG	3 cut(s)	166, 558, 721
BssECI	CCNNGG	2 cut(s)	30, 385
BssMI	GATC	3 cut(s)	3, 58, 478
BssNAI	GTATAC	1 cut(s)	377
BssNI	GRCGYC	1 cut(s)	72
BssT1I	CCWWGG	1 cut(s)	30
Bst1107I	GTATAC	1 cut(s)	377
Bst2UI	CCWGG	1 cut(s)	578
Bst4CI	ACNGT	1 cut(s)	389
Bst6I	CTCTTC	3 cut(s)	91, 347, 703
BstACI	GRCGYC	1 cut(s)	72
BstC8I	GCNNGC	4 cut(s)	265, 415, 552, 569
BstDEI	CTNAG	1 cut(s)	330
BstDSI	CCRYGG	1 cut(s)	385
BstF5I	GGATG	6 cut(s)	193, 215, 364, 444, 663, 690
BstFNI	CGCG	3 cut(s)	77, 399, 413
BstHHI	GCGC	3 cut(s)	79, 401, 413
BstKTI	GATC	3 cut(s)	6, 61, 481
BstMAI	GTCTC	2 cut(s)	512, 711
BstMBI	GATC	3 cut(s)	3, 58, 478
BstMWI	GCNNNNNNNGC	7 cut(s)	154, 269, 405, 414, 417, 426, 573
BstNI	CCWGG	1 cut(s)	578
BstSCI	CCNGG	1 cut(s)	576
BstUI	CGCG	3 cut(s)	77, 399, 413
BstV1I	GCAGC	1 cut(s)	429
BstZ17I	GTATAC	1 cut(s)	377
BsuRI	GGCC	4 cut(s)	576, 581, 654, 729
BtgI	CCRYGG	1 cut(s)	385
BtsCI	GGATG	6 cut(s)	193, 215, 364, 444, 663, 690
BtsIMutI	CAGTG	3 cut(s)	159, 565, 728
Cac8I	GCNNGC	4 cut(s)	265, 415, 552, 569
CfoI	GCGC	3 cut(s)	79, 401, 413
Cfr13I	GGNCC	3 cut(s)	392, 574, 592
CseI	GACGC	1 cut(s)	543
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	1 cut(s)	206
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	3 cut(s)	5, 60, 480
DpnII	GATC	3 cut(s)	3, 58, 478
EaeI	YGGCCR	3 cut(s)	579, 652, 727
Eam1104I	CTCTTC	3 cut(s)	91, 347, 703
EarI	CTCTTC	3 cut(s)	91, 347, 703
EciI	GGCGGA	2 cut(s)	60, 551
Eco130I	CCWWGG	1 cut(s)	30
Eco31I	GGTCTC	1 cut(s)	711
Eco32I	GATATC	1 cut(s)	176
Eco47I	GGWCC	2 cut(s)	392, 592
EcoO109I	RGGNCCY	1 cut(s)	574
EcoRI	GAATTC	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	576
EcoRV	GATATC	1 cut(s)	176
EcoT14I	CCWWGG	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	30
Esp3I	CGTCTC	1 cut(s)	512
FaeI	CATG	1 cut(s)	209
FaiI	YATR	2 cut(s)	207, 377
FatI	CATG	1 cut(s)	205
FauI	CCCGC	1 cut(s)	564
FblI	GTMKAC	1 cut(s)	376
Fnu4HI	GCNGC	4 cut(s)	123, 409, 418, 534
FokI	GGATG	6 cut(s)	200, 222, 371, 451, 670, 697
Fsp4HI	GCNGC	4 cut(s)	123, 409, 418, 534
FspBI	CTAG	1 cut(s)	426
GlaI	GCGC	3 cut(s)	78, 400, 412
GluI	GCNGC	4 cut(s)	123, 409, 418, 534
HaeIII	GGCC	4 cut(s)	576, 581, 654, 729
HapII	CCGG	4 cut(s)	515, 595, 655, 671
HgaI	GACGC	1 cut(s)	543
HhaI	GCGC	3 cut(s)	79, 401, 413
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	209
Hin6I	GCGC	3 cut(s)	77, 399, 411
HinP1I	GCGC	3 cut(s)	77, 399, 411
HinfI	GANTC	1 cut(s)	662
HpaII	CCGG	4 cut(s)	515, 595, 655, 671
HphI	GGTGA	2 cut(s)	140, 473
Hpy166II	GTNNAC	2 cut(s)	377, 395
Hpy188I	TCNGA	3 cut(s)	91, 119, 445
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	2 cut(s)	377, 395
Hpy99I	CGWCG	3 cut(s)	74, 77, 119
HpyAV	CCTTC	1 cut(s)	690
HpyCH4III	ACNGT	1 cut(s)	389
HpyCH4IV	ACGT	2 cut(s)	72, 114
HpyCH4V	TGCA	5 cut(s)	157, 205, 267, 417, 567
HpyF10VI	GCNNNNNNNGC	7 cut(s)	154, 269, 405, 414, 417, 426, 573
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	2 cut(s)	72, 114
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	209
HspAI	GCGC	3 cut(s)	77, 399, 411
Kzo9I	GATC	3 cut(s)	3, 58, 478
LguI	GCTCTTC	1 cut(s)	91
LmnI	GCTCC	3 cut(s)	119, 326, 381
Lsp1109I	GCAGC	1 cut(s)	429
LweI	GCATC	3 cut(s)	82, 463, 537
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	2 cut(s)	72, 114
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	3 cut(s)	5, 60, 480
MbiI	CCGCTC	1 cut(s)	122
MboI	GATC	3 cut(s)	3, 58, 478
MboII	GAAGA	4 cut(s)	78, 364, 535, 720
MfeI	CAATTG	1 cut(s)	623
MhlI	GDGCHC	1 cut(s)	86
MlsI	TGGCCA	1 cut(s)	581
MluCI	AATT	5 cut(s)	165, 291, 433, 540, 623
MluNI	TGGCCA	1 cut(s)	581
MlyI	GAGTC	1 cut(s)	671
MmeI	TCCRAC	2 cut(s)	97, 423
MnlI	CCTC	9 cut(s)	49, 119, 173, 248, 309, 348, 445, 582, 686
Mox20I	TGGCCA	1 cut(s)	581
MroXI	GAANNNNTTC	1 cut(s)	233
MscI	TGGCCA	1 cut(s)	581
MseI	TTAA	1 cut(s)	486
Msp20I	TGGCCA	1 cut(s)	581
MspA1I	CMGCKG	1 cut(s)	420
MspI	CCGG	4 cut(s)	515, 595, 655, 671
MspR9I	CCNGG	1 cut(s)	578
MunI	CAATTG	1 cut(s)	623
MvaI	CCWGG	1 cut(s)	578
MvnI	CGCG	3 cut(s)	77, 399, 413
MwoI	GCNNNNNNNGC	7 cut(s)	154, 269, 405, 414, 417, 426, 573
NdeII	GATC	3 cut(s)	3, 58, 478
NlaIII	CATG	1 cut(s)	209
NlaIV	GGNNCC	4 cut(s)	383, 447, 575, 593
NmuCI	GTSAC	1 cut(s)	274
PciSI	GCTCTTC	1 cut(s)	91
PcsI	WCGNNNNNNNCGW	1 cut(s)	518
PdmI	GAANNNNTTC	1 cut(s)	233
Pfl23II	CGTACG	1 cut(s)	66
PkrI	GCNGC	4 cut(s)	124, 410, 419, 535
PleI	GAGTC	1 cut(s)	670
PpsI	GAGTC	1 cut(s)	670
PshBI	ATTAAT	1 cut(s)	486
Psp6I	CCWGG	1 cut(s)	576
PspGI	CCWGG	1 cut(s)	576
PspLI	CGTACG	1 cut(s)	66
PspN4I	GGNNCC	4 cut(s)	383, 447, 575, 593
PspPI	GGNCC	3 cut(s)	392, 574, 592
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SapI	GCTCTTC	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	4 cut(s)	123, 409, 418, 534
Sau3AI	GATC	3 cut(s)	3, 58, 478
Sau96I	GGNCC	3 cut(s)	392, 574, 592
SchI	GAGTC	1 cut(s)	671
ScrFI	CCNGG	1 cut(s)	578
SduI	GDGCHC	1 cut(s)	86
SetI	ASST	4 cut(s)	19, 75, 117, 331
SfaNI	GCATC	3 cut(s)	82, 463, 537
SinI	GGWCC	2 cut(s)	392, 592
Sse9I	AATT	5 cut(s)	165, 291, 433, 540, 623
SsiI	CCGC	9 cut(s)	45, 122, 272, 408, 420, 533, 536, 571, 635
SspMI	CTAG	1 cut(s)	426
StyD4I	CCNGG	1 cut(s)	576
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	389
TaiI	ACGT	2 cut(s)	75, 117
TaqI	TCGA	3 cut(s)	178, 237, 307
TasI	AATT	5 cut(s)	165, 291, 433, 540, 623
TauI	GCSGC	3 cut(s)	125, 411, 536
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	3 cut(s)	166, 565, 728
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	1 cut(s)	417
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	2 cut(s)	255, 365
TspGWI	ACGGA	1 cut(s)	394
TspRI	CASTG	3 cut(s)	166, 565, 728
VpaK11BI	GGWCC	2 cut(s)	392, 592
VspI	ATTAAT	1 cut(s)	486
XapI	RAATTY	1 cut(s)	165
XmiI	GTMKAC	1 cut(s)	376
XmnI	GAANNNNTTC	1 cut(s)	233
XspI	CTAG	1 cut(s)	426
ZraI	GACGTC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.