Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009624

Physical Location & Seq

Genomic Coordinates Reverse (-)

12369051 .. 12369953

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAGGAAGCTCATTGATGGGAAGGCTAGTGTTGTGGTTTACAACATTTTGATTAATGGGTTTGTGAAATGTGGGGAGCATGATAAGGCTTTGTGGTTTTATGAGAGGATGGTGAGGGATAGAGTTAAGGGTGATGTGTTTACTTTTAATATTTTGATTAGTAGTTATTGTCGAAATTCTCAGTTCGGGTTGGCTTTGGAGTTGTTTAAGGACATGAGGGGGAAAGGGTGTAGTCCCAATGTGGTGAGTTTCAATACTTTGATTAAGGGGTTCTTTAGGGAGGGGAAGTTTGAGGATGGGATTGAGATGGCTTATGAGATGATTGAGTTTGGGTGCGAGTTTTCGAGTGTGACTTGTGAGATTTTGGTTGATGGACTTTGTAGGGAAGGTCAGGTTGAGGAGGCGTGTGAGCTGTTGATTGATTTTTCGAGGAAAGGAGTGGTGCCTAGGGGGTATGATTATTATGGTCTTGTTGAAGTTCTTTGTAGGAAAGGGAATTCGGAGAGAGCGTTGGAGGTTGTAGATGAGCTGTGGAGGATGAGAAATGTTCCAAGCTTGATTGCTTGTACTACTTTGGTTGAGGGTTTGAGGAGATCAGCAAGAATTGACGAGGCTTTGGAAGTGATGGGAAGGATGCTTGAAGTGGATATGGTTCCAGATATTGTGACTTTTAATTGTCTCCTTCAAGATCTCTGCAATTTAGGGAGAACTGAGGAAGCTGATAACCTTAGTTTGTTGTCTTCGACTAAAGGCTTGGAGCTAGACGCCACAGCGTATACCATTTTGGCGTCCGGTTATTCAAGAGAAGGGAAAAAGAAGGAGGGGAAAGTGGTTGTGGATGAAATGCTAGATATGGGATTTATACCTGATCTTGCTACATATAATAGGTTGGCTAATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

301

Amino Acids

33.79

Weight (kDa)

4.94

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	10 - 58	1.1e-14	PPR repeat family
PPR	PF01535	12 - 41	5.8e-08	PPR repeat
PPR_long	PF17177	25 - 189	4.8e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	36 - 89	3.7e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	43 - 73	1.9e-08	PPR repeat
PPR_2	PF13041	45 - 89	1.4e-15	PPR repeat family
PPR	PF01535	47 - 77	8.3e-09	PPR repeat
PPR_1	PF12854	75 - 107	3.6e-09	PPR repeat
PPR_2	PF13041	79 - 128	8.9e-13	PPR repeat family
PPR	PF01535	82 - 112	3.9e-06	PPR repeat
PPR_1	PF12854	111 - 139	1.6e-06	PPR repeat
PPR_2	PF13041	184 - 233	1.7e-07	PPR repeat family
PPR_2	PF13041	219 - 266	2.8e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36240
fragaria_vesca	FvH4_6g18780
prunus_persica	Prupe.7G109800_v2.0.a1
pyrus_communis	pycom04g01140 pycom15g30020
rosa_chinensis	RchiOBHm_Chr3g0473791
rosa_laevigata	RLG00000015254 RLG00000023984
rosa_multiflora	Rmu_co8122080.1_g000001 Rmu_sc0001293.1_g000012 Rmu_sc0007035.1_g000006 Rmu_sc0007035.1_g000008
rosa_roxburghii	Rroxscaffold_1G00029320 Rroxscaffold_6G00407800
rosa_rugosa	Rorug03G0135500
rosa_samantha	Rh3BG214200 Rh3BG214500 Rh3CG210900 Rh3CG211100 Rh3DG210100 Rh3DG210300
rosa_wichuraiana	Rw3G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	442
AccI	GTMKAC	1 cut(s)	776
AcsI	RAATTY	2 cut(s)	175, 496
AcyI	GRCGYC	2 cut(s)	765, 788
AfaI	GTAC	1 cut(s)	568
AgsI	TTSAA	5 cut(s)	253, 476, 641, 686, 801
AluBI	AGCT	6 cut(s)	10, 412, 529, 555, 719, 760
AluI	AGCT	6 cut(s)	10, 412, 529, 555, 719, 760
Alw26I	GTCTC	1 cut(s)	683
ApoI	RAATTY	2 cut(s)	175, 496
AseI	ATTAAT	1 cut(s)	54
AspA2I	CCTAGG	1 cut(s)	446
AsuHPI	GGTGA	3 cut(s)	124, 143, 256
AvrII	CCTAGG	1 cut(s)	446
BanI	GGYRCC	1 cut(s)	442
BbsI	GAAGAC	1 cut(s)	732
BccI	CCATC	6 cut(s)	11, 103, 290, 301, 365, 619
BcoDI	GTCTC	1 cut(s)	683
BfaI	CTAG	4 cut(s)	27, 447, 761, 848
BglII	AGATCT	1 cut(s)	688
BlnI	CCTAGG	1 cut(s)	446
BmiI	GGNNCC	2 cut(s)	444, 654
BmsI	GCATC	1 cut(s)	624
BpiI	GAAGAC	1 cut(s)	732
BsaHI	GRCGYC	2 cut(s)	765, 788
BsaJI	CCNNGG	1 cut(s)	446
BsaWI	WCCGGW	1 cut(s)	791
BsaXI	ACNNNNNCTCC	4 cut(s)	272, 302, 494, 524
BseDI	CCNNGG	1 cut(s)	446
BseGI	GGATG	5 cut(s)	114, 301, 543, 639, 844
BseMII	CTCAG	2 cut(s)	194, 702
BseRI	GAGGAG	2 cut(s)	413, 604
BshNI	GGYRCC	1 cut(s)	442
BsiSI	CCGG	1 cut(s)	792
BslFI	GGGAC	1 cut(s)	219
BsmAI	GTCTC	1 cut(s)	683
BsmFI	GGGAC	1 cut(s)	219
Bsp143I	GATC	3 cut(s)	593, 688, 868
BspCNI	CTCAG	2 cut(s)	193, 703
BspLI	GGNNCC	2 cut(s)	444, 654
BspT107I	GGYRCC	1 cut(s)	442
BssECI	CCNNGG	1 cut(s)	446
BssMI	GATC	3 cut(s)	593, 688, 868
BssNAI	GTATAC	1 cut(s)	777
BssNI	GRCGYC	2 cut(s)	765, 788
BssT1I	CCWWGG	1 cut(s)	446
Bst1107I	GTATAC	1 cut(s)	777
BstACI	GRCGYC	2 cut(s)	765, 788
BstDEI	CTNAG	3 cut(s)	180, 711, 728
BstF5I	GGATG	5 cut(s)	114, 301, 543, 639, 844
BstKTI	GATC	3 cut(s)	596, 691, 871
BstMAI	GTCTC	1 cut(s)	683
BstMBI	GATC	3 cut(s)	593, 688, 868
BstV2I	GAAGAC	1 cut(s)	732
BstX2I	RGATCY	1 cut(s)	688
BstYI	RGATCY	1 cut(s)	688
BstZ17I	GTATAC	1 cut(s)	777
BtsCI	GGATG	5 cut(s)	114, 301, 543, 639, 844
CseI	GACGC	2 cut(s)	773, 777
Csp6I	GTAC	1 cut(s)	567
CviAII	CATG	2 cut(s)	80, 214
CviQI	GTAC	1 cut(s)	567
DdeI	CTNAG	3 cut(s)	180, 711, 728
DpnI	GATC	3 cut(s)	595, 690, 870
DpnII	GATC	3 cut(s)	593, 688, 868
Eco130I	CCWWGG	1 cut(s)	446
EcoRI	GAATTC	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	446
ErhI	CCWWGG	1 cut(s)	446
FaeI	CATG	2 cut(s)	83, 217
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	2 cut(s)	79, 213
FblI	GTMKAC	1 cut(s)	776
FokI	GGATG	5 cut(s)	121, 308, 550, 646, 851
FspBI	CTAG	4 cut(s)	27, 447, 761, 848
HapII	CCGG	1 cut(s)	792
HgaI	GACGC	2 cut(s)	773, 777
Hin1I	GRCGYC	2 cut(s)	765, 788
Hin1II	CATG	2 cut(s)	83, 217
HindIII	AAGCTT	1 cut(s)	553
HpaII	CCGG	1 cut(s)	792
HphI	GGTGA	3 cut(s)	124, 143, 256
Hpy166II	GTNNAC	3 cut(s)	40, 141, 777
Hpy188I	TCNGA	1 cut(s)	502
Hpy188III	TCNNGA	3 cut(s)	656, 686, 801
Hpy8I	GTNNAC	3 cut(s)	40, 141, 777
HpyAV	CCTTC	6 cut(s)	16, 380, 624, 692, 800, 811
HpyCH4V	TGCA	1 cut(s)	696
HpyF3I	CTNAG	3 cut(s)	180, 711, 728
Hsp92I	GRCGYC	2 cut(s)	765, 788
Hsp92II	CATG	2 cut(s)	83, 217
Kzo9I	GATC	3 cut(s)	593, 688, 868
LmnI	GCTCC	2 cut(s)	76, 757
LpnPI	CCDG	4 cut(s)	377, 669, 805, 879
LweI	GCATC	1 cut(s)	624
MaeI	CTAG	4 cut(s)	27, 447, 761, 848
MaeIII	GTNAC	2 cut(s)	349, 664
MalI	GATC	3 cut(s)	595, 690, 870
MboI	GATC	3 cut(s)	593, 688, 868
MboII	GAAGA	1 cut(s)	732
MflI	RGATCY	1 cut(s)	688
MluCI	AATT	5 cut(s)	175, 496, 603, 673, 697
MmeI	TCCRAC	1 cut(s)	492
MseI	TTAA	6 cut(s)	54, 126, 147, 207, 264, 672
MspI	CCGG	1 cut(s)	792
NdeII	GATC	3 cut(s)	593, 688, 868
NlaIII	CATG	2 cut(s)	83, 217
NlaIV	GGNNCC	2 cut(s)	444, 654
NmuCI	GTSAC	2 cut(s)	349, 664
PcsI	WCGNNNNNNNCGW	1 cut(s)	506
PshBI	ATTAAT	1 cut(s)	54
PspN4I	GGNNCC	2 cut(s)	444, 654
PsuI	RGATCY	1 cut(s)	688
RsaI	GTAC	1 cut(s)	568
RsaNI	GTAC	1 cut(s)	567
SaqAI	TTAA	6 cut(s)	54, 126, 147, 207, 264, 672
Sau3AI	GATC	3 cut(s)	593, 688, 868
SfaNI	GCATC	1 cut(s)	624
Sse9I	AATT	5 cut(s)	175, 496, 603, 673, 697
SspI	AATATT	1 cut(s)	151
SspMI	CTAG	4 cut(s)	27, 447, 761, 848
StyI	CCWWGG	1 cut(s)	446
TaqI	TCGA	4 cut(s)	172, 344, 428, 743
TasI	AATT	5 cut(s)	175, 496, 603, 673, 697
TatI	WGTACW	1 cut(s)	566
Tru1I	TTAA	6 cut(s)	54, 126, 147, 207, 264, 672
Tru9I	TTAA	6 cut(s)	54, 126, 147, 207, 264, 672
TseFI	GTSAC	2 cut(s)	349, 664
Tsp45I	GTSAC	2 cut(s)	349, 664
TspDTI	ATGAA	1 cut(s)	855
VspI	ATTAAT	1 cut(s)	54
XapI	RAATTY	2 cut(s)	175, 496
XmaJI	CCTAGG	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	776
XspI	CTAG	4 cut(s)	27, 447, 761, 848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.