Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009624

Physical Location & Seq

Genomic Coordinates Forward (+)

27266873 .. 27268324

Gene Structure 1452 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g30020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGAAAAAGCTGAGAGGACCAATTGCCATACCACTGCTGGAGCAGCGAAACCCTAAAAACACAAAGCCACCACTGTCTCCAATTCCAAACCCAACACTTCCTGGTGCACCCAAAACCCCATCAATTCCTCTCCCCACCCAAACTCTCTCCCACACCTCTAACCACACCCACCTCCTCAACTTCCTCAAAACCCATATTAAGAACCCACCATTCACACCCCAAACCCTCCTCCATTTCCTCCAGTCCAAGCTCCACCACCACCCCACATTCACCCACTTCGACTTCCACGTCTTCAACTGGGCCTCCTCCGTCGACTCCTTCCGCCACGACCACTCCACGTTCGAATGGATGGCTCGCACCCTCGCAATCTCAGACCGATTTCCCGAGTTGAGTTCCCTCCTTGGCTTCATGGTCGCTAACCCTTGTCCTTGCTCCGATGGTATTTTTTCTTGCCCAAGAACAGAACCCATTTTCCAATTTGCCATTAATGCTTACTGCAGGGTTGGGAGATTGGGTGATGCTTTGAATGCATTTGATTCTATGCGGAAATTGATTGATGGCAGGCCTAGTGTTGTGGTTTACAACATTTTGATTAATGGGTTTGTGAAACATAGCCAACATGATCAGGCTCTGGGGTTGTATGATAAGATGATTAAGGATAGAGTTAAGGCCAATGTTTATACCTTTAACATTCTGATTAGTAGTTTTTGTCGTAATTCAGAGTTCAGGTTAGCTTTGGAGCTGTTTAAGGATATGAGGGAGAAGGGGTGTAGTCCCAATGTGGTGAGTTTCAATACTTTGATAAAGGGGTTCTTTAGGGACAGGAAATTTGAGGATGGGATAGGGATGGCTTATGAGATGATTGACTTTGGTTGCAAGTTTTCGAGTGTCACTTGTGAGATTTTGGTCGATGGACTTTGTAGAGAAGGTTGGGTTTCGGAGGCGTGTGAATTGTTGATAGATTTTTCGAGGAAAAGAGTGTTGCCTAAATCTTATGATTATCTCAGTCTTGTTGAGGTGCTTTGTAAGAAGGGAAGTTCGGGCAGAGCATTGGAGGTAGTGGATGAGCTATGGAGGACAGGAAATGTTCCGAGCTTGATCACTTGCACAACTTTGATTGAGGGCTTGCGGAGATTAGGGAGAATGGATGAAGCTTCGGGATTGATGAAAAGGATGCTTGAAGAGGGTTCAGTTCCAGATATCGTGACTTTTAATTGTCTCCTTCAAGACCTTTGCAATTTGGGGAGAACAGTGGAGGCAGATAGTCTTAGGAGGTTGTCGTCGAGCAAAGGTTTGGAGTTAGACAGCACAGCTTATAGGATTTTGGTATCTGGATATTCAAGAGAAGGAAGAAGAAAGGAGGGGGAAGTGCTTGTGGATGACATGCTTGATAGGGGGTTTATCCCTGATATTGCTACATATAATAGATTGATTGACGGGCTTACTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

484

Amino Acids

54.55

Weight (kDa)

8.45

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	189 - 238	5.6e-17	PPR repeat family
PPR	PF01535	192 - 221	1.1e-06	PPR repeat
PPR_long	PF17177	203 - 371	1.4e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	213 - 269	3.2e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	222 - 253	5.9e-09	PPR repeat
PPR_2	PF13041	226 - 272	1.8e-16	PPR repeat family
PPR	PF01535	227 - 257	8.8e-09	PPR repeat
PPR_1	PF12854	255 - 279	1.4e-06	PPR repeat
PPR_2	PF13041	259 - 308	7.3e-11	PPR repeat family
PPR_1	PF12854	291 - 319	8.4e-06	PPR repeat
PPR_3	PF13812	353 - 409	2.5e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	364 - 413	1.9e-10	PPR repeat family
PPR_2	PF13041	435 - 481	1.7e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0009624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36240
fragaria_vesca	FvH4_6g18780
prunus_persica	Prupe.7G109800_v2.0.a1
pyrus_communis	pycom04g01140 pycom15g30020
rosa_chinensis	RchiOBHm_Chr3g0473791
rosa_laevigata	RLG00000015254 RLG00000023984
rosa_multiflora	Rmu_co8122080.1_g000001 Rmu_sc0001293.1_g000012 Rmu_sc0007035.1_g000006 Rmu_sc0007035.1_g000008
rosa_roxburghii	Rroxscaffold_1G00029320 Rroxscaffold_6G00407800
rosa_rugosa	Rorug03G0135500
rosa_samantha	Rh3BG214200 Rh3BG214500 Rh3CG210900 Rh3CG211100 Rh3DG210100 Rh3DG210300
rosa_wichuraiana	Rw3G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	287
AccI	GTMKAC	1 cut(s)	312
AciI	CCGC	3 cut(s)	322, 544, 1129
AcsI	RAATTY	1 cut(s)	827
AgsI	TTSAA	6 cut(s)	295, 526, 793, 1181, 1226, 1341
AhlI	ACTAGT	1 cut(s)	1445
AjiI	CACGTC	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	100
AloI	GAACNNNNNNTCC	2 cut(s)	456, 488
AluBI	AGCT	8 cut(s)	10, 250, 734, 742, 1069, 1095, 1154, 1313
AluI	AGCT	8 cut(s)	10, 250, 734, 742, 1069, 1095, 1154, 1313
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	2 cut(s)	81, 1223
Alw44I	GTGCAC	1 cut(s)	105
AlwNI	CAGNNNCTG	1 cut(s)	631
Ama87I	CYCGRG	1 cut(s)	383
AoxI	GGCC	3 cut(s)	300, 563, 669
ApaLI	GTGCAC	1 cut(s)	105
ApeKI	GCWGC	1 cut(s)	43
ApoI	RAATTY	1 cut(s)	827
ArsI	GACNNNNNNTTYG	2 cut(s)	812, 844
AseI	ATTAAT	2 cut(s)	486, 594
AspS9I	GGNCC	2 cut(s)	17, 300
AsuHPI	GGTGA	3 cut(s)	262, 527, 796
AsuII	TTCGAA	1 cut(s)	342
AvaI	CYCGRG	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	17
BaeGI	GKGCMC	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	283
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	7 cut(s)	127, 343, 431, 551, 830, 841, 905
BciT130I	CCWGG	1 cut(s)	102
BclI	TGATCA	2 cut(s)	622, 1098
BcoDI	GTCTC	2 cut(s)	81, 1223
BcuI	ACTAGT	1 cut(s)	1445
BfaI	CTAG	2 cut(s)	567, 1446
BfmI	CTRYAG	1 cut(s)	496
BisI	GCNGC	1 cut(s)	44
BlsI	GCNGC	1 cut(s)	45
Bme1390I	CCNGG	1 cut(s)	102
Bme18I	GGWCC	1 cut(s)	17
BmeT110I	CYCGRG	1 cut(s)	383
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	2 cut(s)	17, 300
BmrFI	CCNGG	1 cut(s)	102
BmrI	ACTGGG	1 cut(s)	307
BmsI	GCATC	2 cut(s)	508, 1164
BmuI	ACTGGG	1 cut(s)	307
BpiI	GAAGAC	1 cut(s)	283
BpmI	CTGGAG	2 cut(s)	59, 224
Bpu14I	TTCGAA	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	400
BsaXI	ACNNNNNCTCC	8 cut(s)	287, 317, 317, 347, 499, 529, 752, 782
Bse1I	ACTGG	2 cut(s)	241, 302
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	400
BseGI	GGATG	7 cut(s)	354, 841, 852, 1069, 1153, 1179, 1384
BseMII	CTCAG	2 cut(s)	384, 1018
BseNI	ACTGG	2 cut(s)	241, 302
BseRI	GAGGAG	3 cut(s)	164, 218, 295
BseSI	GKGCMC	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	55
BshFI	GGCC	3 cut(s)	302, 565, 671
BsiHKAI	GWGCWC	1 cut(s)	109
BsiHKCI	CYCGRG	1 cut(s)	383
BslFI	GGGAC	2 cut(s)	759, 833
BsmAI	GTCTC	2 cut(s)	81, 1223
BsmFI	GGGAC	2 cut(s)	759, 833
BsmI	GAATGC	1 cut(s)	532
BsnI	GGCC	3 cut(s)	302, 565, 671
BsoBI	CYCGRG	1 cut(s)	383
Bsp119I	TTCGAA	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	2 cut(s)	622, 1098
BspACI	CCGC	3 cut(s)	322, 544, 1129
BspANI	GGCC	3 cut(s)	302, 565, 671
BspCNI	CTCAG	2 cut(s)	383, 1017
BspMAI	CTGCAG	1 cut(s)	500
BspT104I	TTCGAA	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	241, 302
BssECI	CCNNGG	1 cut(s)	400
BssMI	GATC	2 cut(s)	622, 1098
BssT1I	CCWWGG	1 cut(s)	400
Bst2UI	CCWGG	1 cut(s)	102
Bst4CI	ACNGT	2 cut(s)	75, 1252
Bst6I	CTCTTC	1 cut(s)	1176
BstBI	TTCGAA	1 cut(s)	342
BstC8I	GCNNGC	3 cut(s)	355, 563, 1127
BstDEI	CTNAG	4 cut(s)	11, 370, 1004, 1268
BstF5I	GGATG	7 cut(s)	354, 841, 852, 1069, 1153, 1179, 1384
BstKTI	GATC	2 cut(s)	625, 1101
BstMAI	GTCTC	2 cut(s)	81, 1223
BstMBI	GATC	2 cut(s)	622, 1098
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 488, 527
BstNI	CCWGG	1 cut(s)	102
BstNSI	RCATGY	1 cut(s)	1387
BstSCI	CCNGG	1 cut(s)	100
BstSFI	CTRYAG	1 cut(s)	496
BstSLI	GKGCMC	1 cut(s)	109
BstV1I	GCAGC	1 cut(s)	55
BstV2I	GAAGAC	1 cut(s)	283
BsuRI	GGCC	3 cut(s)	302, 565, 671
BtrI	CACGTC	1 cut(s)	289
BtsCI	GGATG	7 cut(s)	354, 841, 852, 1069, 1153, 1179, 1384
BtsI	GCAGTG	1 cut(s)	32
BtsIMutI	CAGTG	3 cut(s)	32, 71, 1257
Cac8I	GCNNGC	3 cut(s)	355, 563, 1127
CaiI	CAGNNNCTG	1 cut(s)	631
Cfr13I	GGNCC	2 cut(s)	17, 300
CviAII	CATG	3 cut(s)	409, 620, 1384
DdeI	CTNAG	4 cut(s)	11, 370, 1004, 1268
DpnI	GATC	2 cut(s)	624, 1100
DpnII	GATC	2 cut(s)	622, 1098
DrdI	GACNNNNNNGTC	1 cut(s)	287
DseDI	GACNNNNNNGTC	1 cut(s)	287
Eam1104I	CTCTTC	1 cut(s)	1176
EarI	CTCTTC	1 cut(s)	1176
EciI	GGCGGA	1 cut(s)	311
Eco130I	CCWWGG	1 cut(s)	400
Eco147I	AGGCCT	1 cut(s)	565
Eco32I	GATATC	1 cut(s)	1201
Eco47I	GGWCC	1 cut(s)	17
Eco88I	CYCGRG	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	100
EcoRV	GATATC	1 cut(s)	1201
EcoT14I	CCWWGG	1 cut(s)	400
EcoT22I	ATGCAT	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	400
FaeI	CATG	3 cut(s)	412, 623, 1387
FalI	AAGNNNNNCTT	2 cut(s)	797, 829
FaqI	GGGAC	2 cut(s)	759, 833
FatI	CATG	3 cut(s)	408, 619, 1383
FbaI	TGATCA	2 cut(s)	622, 1098
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	1 cut(s)	44
FokI	GGATG	7 cut(s)	361, 848, 859, 1076, 1160, 1186, 1391
Fsp4HI	GCNGC	1 cut(s)	44
FspBI	CTAG	2 cut(s)	567, 1446
GluI	GCNGC	1 cut(s)	44
GsuI	CTGGAG	2 cut(s)	59, 224
HaeIII	GGCC	3 cut(s)	302, 565, 671
Hin1II	CATG	3 cut(s)	412, 623, 1387
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HindIII	AAGCTT	1 cut(s)	1152
HinfI	GANTC	2 cut(s)	314, 536
HphI	GGTGA	3 cut(s)	262, 527, 796
Hpy166II	GTNNAC	3 cut(s)	107, 313, 580
Hpy188I	TCNGA	6 cut(s)	373, 436, 696, 721, 940, 1092
Hpy188III	TCNNGA	7 cut(s)	383, 1158, 1196, 1204, 1226, 1332, 1341
Hpy8I	GTNNAC	3 cut(s)	107, 313, 580
Hpy99I	CGWCG	2 cut(s)	314, 1285
HpyAV	CCTTC	6 cut(s)	328, 757, 920, 1024, 1232, 1340
HpyCH4III	ACNGT	2 cut(s)	75, 1252
HpyCH4IV	ACGT	2 cut(s)	288, 338
HpyCH4V	TGCA	6 cut(s)	107, 498, 530, 876, 1107, 1236
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 488, 527
HpyF3I	CTNAG	4 cut(s)	11, 370, 1004, 1268
HpySE526I	ACGT	2 cut(s)	288, 338
Hsp92II	CATG	3 cut(s)	412, 623, 1387
Ksp22I	TGATCA	2 cut(s)	622, 1098
Kzo9I	GATC	2 cut(s)	622, 1098
LmnI	GCTCC	4 cut(s)	40, 255, 437, 739
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	2 cut(s)	508, 1164
MaeI	CTAG	2 cut(s)	567, 1446
MaeII	ACGT	2 cut(s)	288, 338
MaeIII	GTNAC	2 cut(s)	889, 1204
MalI	GATC	2 cut(s)	624, 1100
MboI	GATC	2 cut(s)	622, 1098
MboII	GAAGA	4 cut(s)	283, 1193, 1362, 1365
MfeI	CAATTG	1 cut(s)	21
MhlI	GDGCHC	1 cut(s)	109
MlyI	GAGTC	1 cut(s)	308
Mph1103I	ATGCAT	1 cut(s)	532
MseI	TTAA	9 cut(s)	198, 486, 594, 654, 666, 687, 747, 1212, 1450
MspR9I	CCNGG	1 cut(s)	102
MunI	CAATTG	1 cut(s)	21
Mva1269I	GAATGC	1 cut(s)	532
MvaI	CCWGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	3 cut(s)	43, 488, 527
NdeII	GATC	2 cut(s)	622, 1098
NlaIII	CATG	3 cut(s)	412, 623, 1387
NmuCI	GTSAC	2 cut(s)	889, 1204
NsiI	ATGCAT	1 cut(s)	532
NspI	RCATGY	1 cut(s)	1387
NspV	TTCGAA	1 cut(s)	342
PceI	AGGCCT	1 cut(s)	565
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PctI	GAATGC	1 cut(s)	532
PfeI	GAWTC	1 cut(s)	536
PkrI	GCNGC	1 cut(s)	45
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
PshBI	ATTAAT	2 cut(s)	486, 594
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspPI	GGNCC	2 cut(s)	17, 300
PstI	CTGCAG	1 cut(s)	500
PstNI	CAGNNNCTG	1 cut(s)	631
SalI	GTCGAC	1 cut(s)	311
SaqAI	TTAA	9 cut(s)	198, 486, 594, 654, 666, 687, 747, 1212, 1450
SatI	GCNGC	1 cut(s)	44
Sau3AI	GATC	2 cut(s)	622, 1098
Sau96I	GGNCC	2 cut(s)	17, 300
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	102
SduI	GDGCHC	1 cut(s)	109
SfaNI	GCATC	2 cut(s)	508, 1164
SfcI	CTRYAG	1 cut(s)	496
SfuI	TTCGAA	1 cut(s)	342
SinI	GGWCC	1 cut(s)	17
SpeI	ACTAGT	1 cut(s)	1445
SseBI	AGGCCT	1 cut(s)	565
SsiI	CCGC	3 cut(s)	322, 544, 1129
SspMI	CTAG	2 cut(s)	567, 1446
StuI	AGGCCT	1 cut(s)	565
StyD4I	CCNGG	1 cut(s)	100
StyI	CCWWGG	1 cut(s)	400
TaaI	ACNGT	2 cut(s)	75, 1252
TaiI	ACGT	2 cut(s)	291, 341
TaqI	TCGA	7 cut(s)	279, 312, 342, 884, 909, 968, 1283
TaqII	GACCGA	1 cut(s)	390
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	9 cut(s)	198, 486, 594, 654, 666, 687, 747, 1212, 1450
Tru9I	TTAA	9 cut(s)	198, 486, 594, 654, 666, 687, 747, 1212, 1450
TscAI	CASTG	3 cut(s)	39, 78, 1257
TseFI	GTSAC	2 cut(s)	889, 1204
TseI	GCWGC	1 cut(s)	43
Tsp45I	GTSAC	2 cut(s)	889, 1204
TspDTI	ATGAA	4 cut(s)	17, 397, 1164, 1181
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	3 cut(s)	39, 78, 1257
VneI	GTGCAC	1 cut(s)	105
VpaK11BI	GGWCC	1 cut(s)	17
VspI	ATTAAT	2 cut(s)	486, 594
XapI	RAATTY	1 cut(s)	827
XceI	RCATGY	1 cut(s)	1387
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XmiI	GTMKAC	1 cut(s)	312
XspI	CTAG	2 cut(s)	567, 1446
Zsp2I	ATGCAT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.