Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007035.1

Orthogroup ID

OG0009624

Physical Location & Seq

Genomic Coordinates Forward (+)

34852 .. 36893

Gene Structure 2042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007035.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1593 bp

atgaggaggttccgaaaaccaaagctgatacctttactggagcaaaagcctccaacactcccacagctctctccgatcccaaacccatctctcccaaaacccccacaacacccatcaccaccaccttccccaatcctcactctctcccacacctcaaaccacacccacctcctcaccttcatcaaaacccacatcaaaaacccacctctctcccccaaaacccttctccatttcctcaaatccaagctccaccaccaccccaccttcacccatttcgacttccacgtcttcaactgggcctcctccattgactcctaccgccatgaccacacaaccttcgaatggatggtctgcactctcgcaaccaccgaccgcttcgccgagctgggccatctcatcggtttcatggtttcgaacccatgcccttgttccgatggtattttctcttgccccagaacagaacccattttcaaatttgcgattagtgcttattgtagagtagggagattgggtgatgctgttagtgcttttgattccatgaggaaattgattgatgggaagcctagtgttgtggtttataacattgtgattaatgggtttgtgaaatgtggggcacatggtaaggctttggggttttatgagaagatggtgagggatagagtaaggggtgatgtgtttactttcaatattttgattagtagttattgtcgaaattcgcaattcgggttggctttggagttgtttaaggagatgagggagaaggggtgtagtcccaatgtggttagtttcaatactttgattaaggggttctttagggagaggaagtttgaggatgggattgagatggcttatgagatgattgagtttgggtgcaagttttcgagtgtgacttgtgagattttggttgatggactttgtagagaaggtcgggttgaggaggcgtgtgagctgttgattgatttttcaaggaaaggagtgctgcctagattgtatgattactatggtcttgttgaagtgctttgtgggaaaagaaattcggggagagcgttggaggttgtggatgagctgtggaggacgggaaatgttccgagcttgattgcttgtacgactttggttgagggtttgaggaggtcggcgaggattgatgaagctttagaagtgattgaaaggatgcttgaagagggtatggttccagatattgtgacttttaattgcctccttcaagatctttgcaatttggggagaactgaggaagctgataaccttaggttgttgtcttctagtaaaggcttggagctagacggcatggcctataccattttggtgtctgggtattcaagagaagggaaaaagaaggaggtgaaagtggtggtggatgagatgctggatatgggatttatacctgatcttgctacatataatagcccttttcccggcctttgcctcaaaggttcaagtcttcaacacaccaccaccacttataggcctggtggtgctgtcgagaacgataagatcccttctcatgtgagaaagcaagcaatggaagctctagacacttgtggaagaagagctattggtgacatggccgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

530

Amino Acids

59.53

Weight (kDa)

8.04

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36240
fragaria_vesca	FvH4_6g18780
prunus_persica	Prupe.7G109800_v2.0.a1
pyrus_communis	pycom04g01140 pycom15g30020
rosa_chinensis	RchiOBHm_Chr3g0473791
rosa_laevigata	RLG00000015254 RLG00000023984
rosa_multiflora	Rmu_co8122080.1_g000001 Rmu_sc0001293.1_g000012 Rmu_sc0007035.1_g000006 Rmu_sc0007035.1_g000008
rosa_roxburghii	Rroxscaffold_1G00029320 Rroxscaffold_6G00407800
rosa_rugosa	Rorug03G0135500
rosa_samantha	Rh3BG214200 Rh3BG214500 Rh3CG210900 Rh3CG211100 Rh3DG210100 Rh3DG210300
rosa_wichuraiana	Rw3G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	579
AasI	GACNNNNNNGTC	1 cut(s)	284
AciI	CCGC	2 cut(s)	319, 373
AclWI	GGATC	2 cut(s)	70, 1507
AcoI	YGGCCR	1 cut(s)	1584
AcsI	RAATTY	3 cut(s)	473, 712, 1033
AfaI	GTAC	1 cut(s)	1105
AfiI	CCNNNNNNNGG	3 cut(s)	342, 1433, 1482
AjiI	CACGTC	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	1486
AlwI	GGATC	2 cut(s)	70, 1507
AoxI	GGCC	6 cut(s)	297, 388, 1308, 1435, 1484, 1584
ApeKI	GCWGC	1 cut(s)	979
ApoI	RAATTY	3 cut(s)	473, 712, 1033
ArsI	GACNNNNNNTTYG	2 cut(s)	333, 365
AseI	ATTAAT	1 cut(s)	591
AspS9I	GGNCC	2 cut(s)	297, 388
AsuC2I	CCSGG	1 cut(s)	1434
AsuHPI	GGTGA	8 cut(s)	108, 166, 259, 524, 661, 680, 1372, 1589
AsuII	TTCGAA	2 cut(s)	339, 413
AxyI	CCTNAGG	1 cut(s)	1265
BaeGI	GKGCMC	1 cut(s)	616
BbsI	GAAGAC	3 cut(s)	280, 1269, 1451
BbvI	GCAGC	1 cut(s)	966
BceAI	ACGGC	2 cut(s)	1318, 1571
BciT130I	CCWGG	1 cut(s)	1488
BcnI	CCSGG	1 cut(s)	1434
BfaI	CTAG	5 cut(s)	564, 984, 1281, 1298, 1550
BglII	AGATCT	1 cut(s)	1225
BisI	GCNGC	1 cut(s)	980
BlsI	GCNGC	1 cut(s)	981
Bme1390I	CCNGG	2 cut(s)	1434, 1488
BmgBI	CACGTC	1 cut(s)	286
BmgT120I	GGNCC	2 cut(s)	297, 388
BmiI	GGNNCC	2 cut(s)	11, 1191
BmrFI	CCNGG	2 cut(s)	1434, 1488
BmrI	ACTGGG	1 cut(s)	304
BmsI	GCATC	3 cut(s)	505, 1161, 1371
BmuI	ACTGGG	1 cut(s)	304
BpiI	GAAGAC	3 cut(s)	280, 1269, 1451
BpmI	CTGGAG	1 cut(s)	59
Bpu14I	TTCGAA	2 cut(s)	339, 413
BpuMI	CCSGG	1 cut(s)	1434
BsaXI	ACNNNNNCTCC	8 cut(s)	284, 314, 496, 526, 749, 779, 809, 839
Bsc4I	CCNNNNNNNGG	3 cut(s)	342, 1433, 1482
Bse1I	ACTGG	2 cut(s)	42, 299
Bse21I	CCTNAGG	1 cut(s)	1265
Bse3DI	GCAATG	1 cut(s)	1545
BseBI	CCWGG	1 cut(s)	1488
BseGI	GGATG	5 cut(s)	351, 838, 1066, 1176, 1381
BseLI	CCNNNNNNNGG	3 cut(s)	342, 1433, 1482
BseMI	GCAATG	1 cut(s)	1545
BseMII	CTCAG	1 cut(s)	1239
BseNI	ACTGG	2 cut(s)	42, 299
BseRI	GAGGAG	5 cut(s)	19, 161, 292, 950, 1141
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	1 cut(s)	966
BseYI	CCCAGC	1 cut(s)	385
BsgI	GTGCAG	1 cut(s)	337
Bsh1285I	CGRYCG	1 cut(s)	373
BshFI	GGCC	6 cut(s)	299, 390, 1310, 1437, 1486, 1586
BsiEI	CGRYCG	1 cut(s)	373
BsiSI	CCGG	1 cut(s)	1434
BslFI	GGGAC	1 cut(s)	756
BslI	CCNNNNNNNGG	3 cut(s)	342, 1433, 1482
BsmFI	GGGAC	1 cut(s)	756
BsnI	GGCC	6 cut(s)	299, 390, 1310, 1437, 1486, 1586
Bsp119I	TTCGAA	2 cut(s)	339, 413
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp143I	GATC	4 cut(s)	75, 1225, 1405, 1512
BspACI	CCGC	2 cut(s)	319, 373
BspANI	GGCC	6 cut(s)	299, 390, 1310, 1437, 1486, 1586
BspCNI	CTCAG	1 cut(s)	1240
BspLI	GGNNCC	2 cut(s)	11, 1191
BspPI	GGATC	2 cut(s)	70, 1507
BspQI	GCTCTTC	1 cut(s)	1561
BspT104I	TTCGAA	2 cut(s)	339, 413
BsrDI	GCAATG	1 cut(s)	1545
BsrI	ACTGG	2 cut(s)	42, 299
BssMI	GATC	4 cut(s)	75, 1225, 1405, 1512
Bst2UI	CCWGG	1 cut(s)	1488
Bst6I	CTCTTC	2 cut(s)	1173, 1561
BstBI	TTCGAA	2 cut(s)	339, 413
BstC8I	GCNNGC	1 cut(s)	1536
BstDEI	CTNAG	2 cut(s)	1248, 1265
BstF5I	GGATG	5 cut(s)	351, 838, 1066, 1176, 1381
BstKTI	GATC	4 cut(s)	78, 1228, 1408, 1515
BstMBI	GATC	4 cut(s)	75, 1225, 1405, 1512
BstMCI	CGRYCG	1 cut(s)	373
BstMWI	GCNNNNNNNGC	3 cut(s)	485, 524, 1544
BstNI	CCWGG	1 cut(s)	1488
BstSCI	CCNGG	2 cut(s)	1432, 1486
BstSLI	GKGCMC	1 cut(s)	616
BstV1I	GCAGC	1 cut(s)	966
BstV2I	GAAGAC	3 cut(s)	280, 1269, 1451
BstX2I	RGATCY	2 cut(s)	1225, 1512
BstYI	RGATCY	2 cut(s)	1225, 1512
Bsu36I	CCTNAGG	1 cut(s)	1265
BsuRI	GGCC	6 cut(s)	299, 390, 1310, 1437, 1486, 1586
BtrI	CACGTC	1 cut(s)	286
BtsCI	GGATG	5 cut(s)	351, 838, 1066, 1176, 1381
Cac8I	GCNNGC	1 cut(s)	1536
Cfr13I	GGNCC	2 cut(s)	297, 388
Csp6I	GTAC	1 cut(s)	1104
CviAII	CATG	8 cut(s)	323, 406, 420, 538, 617, 1306, 1523, 1582
CviQI	GTAC	1 cut(s)	1104
DdeI	CTNAG	2 cut(s)	1248, 1265
DpnI	GATC	4 cut(s)	77, 1227, 1407, 1514
DpnII	GATC	4 cut(s)	75, 1225, 1405, 1512
DrdI	GACNNNNNNGTC	1 cut(s)	284
DseDI	GACNNNNNNGTC	1 cut(s)	284
EaeI	YGGCCR	1 cut(s)	1584
Eam1104I	CTCTTC	2 cut(s)	1173, 1561
EarI	CTCTTC	2 cut(s)	1173, 1561
Eco147I	AGGCCT	1 cut(s)	1486
Eco81I	CCTNAGG	1 cut(s)	1265
EcoRII	CCWGG	1 cut(s)	1486
FaeI	CATG	8 cut(s)	326, 409, 423, 541, 620, 1309, 1526, 1585
FalI	AAGNNNNNCTT	2 cut(s)	794, 826
FaqI	GGGAC	1 cut(s)	756
FatI	CATG	8 cut(s)	322, 405, 419, 537, 616, 1305, 1522, 1581
Fnu4HI	GCNGC	1 cut(s)	980
FokI	GGATG	5 cut(s)	358, 845, 1073, 1183, 1388
Fsp4HI	GCNGC	1 cut(s)	980
FspBI	CTAG	5 cut(s)	564, 984, 1281, 1298, 1550
GluI	GCNGC	1 cut(s)	980
GsaI	CCCAGC	1 cut(s)	389
GsuI	CTGGAG	1 cut(s)	59
HaeIII	GGCC	6 cut(s)	299, 390, 1310, 1437, 1486, 1586
HapII	CCGG	1 cut(s)	1434
Hin1II	CATG	8 cut(s)	326, 409, 423, 541, 620, 1309, 1526, 1585
HindIII	AAGCTT	1 cut(s)	1149
HinfI	GANTC	2 cut(s)	311, 533
HpaII	CCGG	1 cut(s)	1434
HphI	GGTGA	8 cut(s)	108, 166, 259, 524, 661, 680, 1372, 1589
Hpy166II	GTNNAC	1 cut(s)	678
Hpy188I	TCNGA	4 cut(s)	14, 75, 433, 1089
Hpy188III	TCNNGA	5 cut(s)	1193, 1223, 1338, 1501, 1550
Hpy8I	GTNNAC	1 cut(s)	678
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	3 cut(s)	354, 873, 1233
HpyF10VI	GCNNNNNNNGC	3 cut(s)	485, 524, 1544
HpyF3I	CTNAG	2 cut(s)	1248, 1265
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	8 cut(s)	326, 409, 423, 541, 620, 1309, 1526, 1585
Kzo9I	GATC	4 cut(s)	75, 1225, 1405, 1512
LguI	GCTCTTC	1 cut(s)	1561
LmnI	GCTCC	3 cut(s)	40, 252, 1294
Lsp1109I	GCAGC	1 cut(s)	966
LweI	GCATC	3 cut(s)	505, 1161, 1371
MaeI	CTAG	5 cut(s)	564, 984, 1281, 1298, 1550
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	3 cut(s)	886, 1201, 1577
MalI	GATC	4 cut(s)	77, 1227, 1407, 1514
MboI	GATC	4 cut(s)	75, 1225, 1405, 1512
MboII	GAAGA	7 cut(s)	280, 655, 1190, 1269, 1451, 1575, 1578
MflI	RGATCY	2 cut(s)	1225, 1512
MhlI	GDGCHC	1 cut(s)	616
MluCI	AATT	7 cut(s)	473, 545, 712, 719, 1033, 1210, 1234
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	2 cut(s)	77, 1029
MseI	TTAA	4 cut(s)	591, 744, 801, 1209
MslI	CAYNNNNRTG	1 cut(s)	1322
MspI	CCGG	1 cut(s)	1434
MspR9I	CCNGG	2 cut(s)	1434, 1488
MvaI	CCWGG	1 cut(s)	1488
MwoI	GCNNNNNNNGC	3 cut(s)	485, 524, 1544
NciI	CCSGG	1 cut(s)	1434
NdeII	GATC	4 cut(s)	75, 1225, 1405, 1512
NlaIII	CATG	8 cut(s)	326, 409, 423, 541, 620, 1309, 1526, 1585
NlaIV	GGNNCC	2 cut(s)	11, 1191
NmeAIII	GCCGAG	1 cut(s)	406
NmuCI	GTSAC	3 cut(s)	886, 1201, 1577
NspV	TTCGAA	2 cut(s)	339, 413
PceI	AGGCCT	1 cut(s)	1486
PciSI	GCTCTTC	1 cut(s)	1561
PcsI	WCGNNNNNNNCGW	3 cut(s)	282, 366, 1043
PfeI	GAWTC	1 cut(s)	533
PkrI	GCNGC	1 cut(s)	981
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
PshBI	ATTAAT	1 cut(s)	591
PsiI	TTATAA	1 cut(s)	579
Psp6I	CCWGG	1 cut(s)	1486
PspFI	CCCAGC	1 cut(s)	385
PspGI	CCWGG	1 cut(s)	1486
PspN4I	GGNNCC	2 cut(s)	11, 1191
PspPI	GGNCC	2 cut(s)	297, 388
PsuI	RGATCY	2 cut(s)	1225, 1512
RsaI	GTAC	1 cut(s)	1105
RsaNI	GTAC	1 cut(s)	1104
RseI	CAYNNNNRTG	1 cut(s)	1322
SapI	GCTCTTC	1 cut(s)	1561
SaqAI	TTAA	4 cut(s)	591, 744, 801, 1209
SatI	GCNGC	1 cut(s)	980
Sau3AI	GATC	4 cut(s)	75, 1225, 1405, 1512
Sau96I	GGNCC	2 cut(s)	297, 388
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	2 cut(s)	1434, 1488
SduI	GDGCHC	1 cut(s)	616
SfaNI	GCATC	3 cut(s)	505, 1161, 1371
SfuI	TTCGAA	2 cut(s)	339, 413
SmiMI	CAYNNNNRTG	1 cut(s)	1322
Sse9I	AATT	7 cut(s)	473, 545, 712, 719, 1033, 1210, 1234
SseBI	AGGCCT	1 cut(s)	1486
SsiI	CCGC	2 cut(s)	319, 373
SspI	AATATT	1 cut(s)	688
SspMI	CTAG	5 cut(s)	564, 984, 1281, 1298, 1550
StuI	AGGCCT	1 cut(s)	1486
StyD4I	CCNGG	2 cut(s)	1432, 1486
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	6 cut(s)	276, 339, 413, 709, 881, 1500
TasI	AATT	7 cut(s)	473, 545, 712, 719, 1033, 1210, 1234
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	4 cut(s)	591, 744, 801, 1209
Tru9I	TTAA	4 cut(s)	591, 744, 801, 1209
TseFI	GTSAC	3 cut(s)	886, 1201, 1577
TseI	GCWGC	1 cut(s)	979
Tsp45I	GTSAC	3 cut(s)	886, 1201, 1577
TspDTI	ATGAA	3 cut(s)	169, 394, 1161
VspI	ATTAAT	1 cut(s)	591
XapI	RAATTY	3 cut(s)	473, 712, 1033
XbaI	TCTAGA	1 cut(s)	1549
XspI	CTAG	5 cut(s)	564, 984, 1281, 1298, 1550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.