Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009624

Physical Location & Seq

Genomic Coordinates Forward (+)

13765273 .. 13767677

Gene Structure 2405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G109800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGAAACGCACCGTTTTGCAGAGACATAAGCGTGGCCTAAGAGTAACAGCCATTGTTGGGAGCTTGAGTTTCAAACGTTTGGTGATGAATAAGATGAGAAGACCAATAACCATACCACTACTGGAGCAAACCCCTAAAAACCCAAAACCAGCGCTCTCTCCAATCCCAAACCCAACACTTCCAAGCGCACCCAAAACCCTTTCAACCCCTCACCCAACCCTCACTCTCTCCCCAACTTCTAACCACACCCACCTCCTCAACTTCCTCAAAACCCATATCAAAAACCCACCTCTCACATCCCTAAACCTCCTCCATTTCCTCAAATCCAAGCTCCACCACCACCCCACCTTCGCCCACTTTGACTTCCATGTCTTCAACTGGGCCTCCTCCATCGACTCCTTTCGCCACGACCATTCCACATTCGAATGGATGGCCCGCACGCTCGCAATCACTGACCGCTTCGTCGAATTGGGTTCTCTTCTCAGCTTCATGGTCTCCAACCCTTGTCCTTGCTCGGATGGTATTTTCTCTTGCCCCAGAACAGAACCCATTTTCCAATTTGCCATTAATGCTTATTGTAGAGTTGGGAGATTGGATGATGCTGTGAATGCGTTTGATTCTATGCGGAAATTGATTGATGGGAGGCCTAGTGTTGTGGTTTATAACATTTTGATTCATGGATTTGTGAAATGTGGTCAGCATGATAAGGCTTTGGGATTGTATGATAAGATGATGAAGGATAGAGTTAAGGCTGATGTGTTTACTTTCAATATTTTGATTAGTAGTTATTGTCGTAATTCACAATTTGGGTTAGCCTTGGAGTTGTTTAAGGATATGAGAGAGAAGGGGTGTAGCCCCAATGTGGTGAGTTTTAATACTTTGATTAAAGGTTTCTTTAGGGAAAGGAAGTTTGAGGATGGGATTGGGATGGCTTATGAGATGATTGAATTCGGGTGCAAGTTTTCGAGTGTGACTTGTGAGATTTTGGTTGATGGCCTTTGTAGAGAAGGTCAGGTTTCGGAGGCGTGTGAGTTGTTGATAGATTTTTCAAGAAAAGAAGTGTTGCCTAAATGGTATGATTATCTTGGTCTTATTGAGGTGCTCTGTAAGAAAGGAAATTCGGGTAGAGCATTGGAGGTTGTGGATGAGCTATGGAGGAAAGGAAATGTTCCGAGCTTGATTGCTTGTACCACTTTGATTGAGGGTTTGAGGAGGTCAGCAAGAATTGATGAAGCTTTTGGATTGATGAAAAGGATGCTTGAAGAAGGTATAGTTCCGGATATTGTGACATTTAATTGTCTTCTTCAAGATCTCTGTAATCTGAGGAGAACAGTGGAGGCAGATAGTCTTAAGCTGTTGTCTTCGAGCAAAGGCTTGGACCTAGACAGCACGGCTTATAGCATTTTGGTATCTGGGTATTCAAGAGAAGGCAAAAGGAAGGAGCAGAAACTGCTGGTGGATGAGATGCTGGATAAGGGGTTTATACCTGACCTTGGTACATATAACAGGCTGGCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

507

Amino Acids

57.29

Weight (kDa)

8.97

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36240
fragaria_vesca	FvH4_6g18780
prunus_persica	Prupe.7G109800_v2.0.a1
pyrus_communis	pycom04g01140 pycom15g30020
rosa_chinensis	RchiOBHm_Chr3g0473791
rosa_laevigata	RLG00000015254 RLG00000023984
rosa_multiflora	Rmu_co8122080.1_g000001 Rmu_sc0001293.1_g000012 Rmu_sc0007035.1_g000006 Rmu_sc0007035.1_g000008
rosa_roxburghii	Rroxscaffold_1G00029320 Rroxscaffold_6G00407800
rosa_rugosa	Rorug03G0135500
rosa_samantha	Rh3BG214200 Rh3BG214500 Rh3CG210900 Rh3CG211100 Rh3DG210100 Rh3DG210300
rosa_wichuraiana	Rw3G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	663
AasI	GACNNNNNNGTC	2 cut(s)	368, 461
AccIII	TCCGGA	1 cut(s)	1276
AciI	CCGC	3 cut(s)	436, 457, 625
AclI	AACGTT	1 cut(s)	76
AcsI	RAATTY	2 cut(s)	947, 1117
AfaI	GTAC	2 cut(s)	1189, 1498
AfeI	AGCGCT	1 cut(s)	153
AfiI	CCNNNNNNNGG	3 cut(s)	57, 862, 1493
AflII	CTTAAG	1 cut(s)	1349
AgsI	TTSAA	9 cut(s)	73, 204, 376, 769, 947, 1050, 1262, 1307, 1422
AloI	GAACNNNNNNTCC	2 cut(s)	537, 569
AluBI	AGCT	7 cut(s)	63, 331, 486, 1150, 1176, 1235, 1354
AluI	AGCT	7 cut(s)	63, 331, 486, 1150, 1176, 1235, 1354
Alw21I	GWGCWC	1 cut(s)	1104
Alw26I	GTCTC	2 cut(s)	16, 499
AlwNI	CAGNNNCTG	1 cut(s)	1450
Aor13HI	TCCGGA	1 cut(s)	1276
Aor51HI	AGCGCT	1 cut(s)	153
AoxI	GGCC	5 cut(s)	34, 381, 432, 644, 994
ApoI	RAATTY	2 cut(s)	947, 1117
AseI	ATTAAT	1 cut(s)	567
AspLEI	GCGC	2 cut(s)	154, 188
AspS9I	GGNCC	3 cut(s)	381, 433, 1378
AsuHPI	GGTGA	3 cut(s)	94, 203, 877
AsuII	TTCGAA	1 cut(s)	423
AvaII	GGWCC	1 cut(s)	1378
BbsI	GAAGAC	4 cut(s)	106, 364, 1292, 1353
Bbv12I	GWGCWC	1 cut(s)	1104
BccI	CCATC	7 cut(s)	398, 424, 512, 632, 911, 922, 986
BceAI	ACGGC	1 cut(s)	1407
BcoDI	GTCTC	2 cut(s)	16, 499
BfaI	CTAG	2 cut(s)	648, 1382
BfoI	RGCGCY	1 cut(s)	155
BfrI	CTTAAG	1 cut(s)	1349
BglII	AGATCT	1 cut(s)	1309
Bme18I	GGWCC	1 cut(s)	1378
BmgT120I	GGNCC	3 cut(s)	381, 433, 1378
BmrI	ACTGGG	1 cut(s)	388
BmsI	GCATC	3 cut(s)	589, 1245, 1455
BmuI	ACTGGG	1 cut(s)	388
BpiI	GAAGAC	4 cut(s)	106, 364, 1292, 1353
BpmI	CTGGAG	1 cut(s)	143
Bpu14I	TTCGAA	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	85
BsaI	GGTCTC	1 cut(s)	499
BsaJI	CCNNGG	2 cut(s)	816, 1492
BsaWI	WCCGGW	1 cut(s)	1276
BsaXI	ACNNNNNCTCC	6 cut(s)	52, 82, 368, 398, 634, 664
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 862, 1493
Bse1I	ACTGG	2 cut(s)	126, 383
BseAI	TCCGGA	1 cut(s)	1276
BseDI	CCNNGG	2 cut(s)	816, 1492
BseGI	GGATG	9 cut(s)	296, 435, 523, 601, 922, 933, 1150, 1260, 1465
BseLI	CCNNNNNNNGG	3 cut(s)	57, 862, 1493
BseMII	CTCAG	2 cut(s)	496, 1313
BseNI	ACTGG	2 cut(s)	126, 383
BseRI	GAGGAG	5 cut(s)	245, 299, 376, 1225, 1339
BshFI	GGCC	5 cut(s)	36, 383, 434, 646, 996
BsiHKAI	GWGCWC	1 cut(s)	1104
BsiSI	CCGG	1 cut(s)	1277
BslI	CCNNNNNNNGG	3 cut(s)	57, 862, 1493
BsmAI	GTCTC	2 cut(s)	16, 499
BsmI	GAATGC	1 cut(s)	613
BsnI	GGCC	5 cut(s)	36, 383, 434, 646, 996
Bso31I	GGTCTC	1 cut(s)	499
Bsp119I	TTCGAA	1 cut(s)	423
Bsp1286I	GDGCHC	1 cut(s)	1104
Bsp13I	TCCGGA	1 cut(s)	1276
Bsp143I	GATC	1 cut(s)	1309
BspACI	CCGC	3 cut(s)	436, 457, 625
BspANI	GGCC	5 cut(s)	36, 383, 434, 646, 996
BspCNI	CTCAG	2 cut(s)	495, 1314
BspEI	TCCGGA	1 cut(s)	1276
BspT104I	TTCGAA	1 cut(s)	423
BspTI	CTTAAG	1 cut(s)	1349
BspTNI	GGTCTC	1 cut(s)	499
BsrI	ACTGG	2 cut(s)	126, 383
BssECI	CCNNGG	2 cut(s)	816, 1492
BssMI	GATC	1 cut(s)	1309
BssT1I	CCWWGG	2 cut(s)	816, 1492
Bst4CI	ACNGT	2 cut(s)	13, 1333
Bst6I	CTCTTC	1 cut(s)	483
BstAFI	CTTAAG	1 cut(s)	1349
BstAPI	GCANNNNNTGC	1 cut(s)	1450
BstBI	TTCGAA	1 cut(s)	423
BstC8I	GCNNGC	4 cut(s)	436, 440, 444, 1512
BstDEI	CTNAG	3 cut(s)	38, 482, 1322
BstF5I	GGATG	9 cut(s)	296, 435, 523, 601, 922, 933, 1150, 1260, 1465
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	2 cut(s)	154, 188
BstKTI	GATC	1 cut(s)	1312
BstMAI	GTCTC	2 cut(s)	16, 499
BstMBI	GATC	1 cut(s)	1309
BstMWI	GCNNNNNNNGC	3 cut(s)	569, 608, 1450
BstV2I	GAAGAC	4 cut(s)	106, 364, 1292, 1353
BstX2I	RGATCY	1 cut(s)	1309
BstYI	RGATCY	1 cut(s)	1309
BsuRI	GGCC	5 cut(s)	36, 383, 434, 646, 996
BtsCI	GGATG	9 cut(s)	296, 435, 523, 601, 922, 933, 1150, 1260, 1465
BtsIMutI	CAGTG	2 cut(s)	450, 1338
Cac8I	GCNNGC	4 cut(s)	436, 440, 444, 1512
CaiI	CAGNNNCTG	1 cut(s)	1450
CfoI	GCGC	2 cut(s)	154, 188
Cfr13I	GGNCC	3 cut(s)	381, 433, 1378
Csp6I	GTAC	2 cut(s)	1188, 1497
CspCI	CAANNNNNGTGG	2 cut(s)	1180, 1215
CviAII	CATG	4 cut(s)	368, 490, 677, 701
CviQI	GTAC	2 cut(s)	1188, 1497
DdeI	CTNAG	3 cut(s)	38, 482, 1322
DpnI	GATC	1 cut(s)	1311
DpnII	GATC	1 cut(s)	1309
DrdI	GACNNNNNNGTC	2 cut(s)	368, 461
DseDI	GACNNNNNNGTC	2 cut(s)	368, 461
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
Eco130I	CCWWGG	2 cut(s)	816, 1492
Eco147I	AGGCCT	1 cut(s)	646
Eco31I	GGTCTC	1 cut(s)	499
Eco47I	GGWCC	1 cut(s)	1378
Eco47III	AGCGCT	1 cut(s)	153
EcoRI	GAATTC	1 cut(s)	947
EcoT14I	CCWWGG	2 cut(s)	816, 1492
ErhI	CCWWGG	2 cut(s)	816, 1492
FaeI	CATG	4 cut(s)	371, 493, 680, 704
FatI	CATG	4 cut(s)	367, 489, 676, 700
FauI	CCCGC	1 cut(s)	443
FokI	GGATG	9 cut(s)	283, 442, 530, 608, 929, 940, 1157, 1267, 1472
FspBI	CTAG	2 cut(s)	648, 1382
GlaI	GCGC	2 cut(s)	153, 187
GsuI	CTGGAG	1 cut(s)	143
HaeII	RGCGCY	1 cut(s)	155
HaeIII	GGCC	5 cut(s)	36, 383, 434, 646, 996
HapII	CCGG	1 cut(s)	1277
HhaI	GCGC	2 cut(s)	154, 188
Hin1II	CATG	4 cut(s)	371, 493, 680, 704
Hin6I	GCGC	2 cut(s)	152, 186
HinP1I	GCGC	2 cut(s)	152, 186
HindIII	AAGCTT	1 cut(s)	1233
HinfI	GANTC	3 cut(s)	395, 617, 673
HpaII	CCGG	1 cut(s)	1277
HphI	GGTGA	3 cut(s)	94, 203, 877
Hpy166II	GTNNAC	1 cut(s)	762
Hpy188I	TCNGA	4 cut(s)	517, 1021, 1173, 1323
Hpy188III	TCNNGA	4 cut(s)	1050, 1277, 1307, 1422
Hpy8I	GTNNAC	1 cut(s)	762
Hpy99I	CGWCG	1 cut(s)	467
HpyAV	CCTTC	7 cut(s)	358, 730, 838, 1001, 1259, 1421, 1432
HpyCH4III	ACNGT	2 cut(s)	13, 1333
HpyCH4IV	ACGT	1 cut(s)	76
HpyCH4V	TGCA	2 cut(s)	19, 957
HpyF10VI	GCNNNNNNNGC	3 cut(s)	569, 608, 1450
HpyF3I	CTNAG	3 cut(s)	38, 482, 1322
HpySE526I	ACGT	1 cut(s)	76
Hsp92II	CATG	4 cut(s)	371, 493, 680, 704
HspAI	GCGC	2 cut(s)	152, 186
Kpn2I	TCCGGA	1 cut(s)	1276
Kzo9I	GATC	1 cut(s)	1309
LmnI	GCTCC	4 cut(s)	60, 124, 336, 1441
LweI	GCATC	3 cut(s)	589, 1245, 1455
MaeI	CTAG	2 cut(s)	648, 1382
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	3 cut(s)	43, 970, 1285
MalI	GATC	1 cut(s)	1311
MboI	GATC	1 cut(s)	1309
MboII	GAAGA	7 cut(s)	111, 364, 470, 1274, 1292, 1295, 1353
MflI	RGATCY	1 cut(s)	1309
MhlI	GDGCHC	1 cut(s)	1104
MluCI	AATT	9 cut(s)	467, 557, 629, 796, 803, 947, 1117, 1224, 1294
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	1 cut(s)	522
MroI	TCCGGA	1 cut(s)	1276
MseI	TTAA	7 cut(s)	567, 747, 828, 873, 885, 1293, 1350
MslI	CAYNNNNRTG	2 cut(s)	30, 424
MspCI	CTTAAG	1 cut(s)	1349
MspI	CCGG	1 cut(s)	1277
Mva1269I	GAATGC	1 cut(s)	613
MwoI	GCNNNNNNNGC	3 cut(s)	569, 608, 1450
NdeII	GATC	1 cut(s)	1309
NlaIII	CATG	4 cut(s)	371, 493, 680, 704
NmuCI	GTSAC	2 cut(s)	970, 1285
NspV	TTCGAA	1 cut(s)	423
PceI	AGGCCT	1 cut(s)	646
PctI	GAATGC	1 cut(s)	613
PfeI	GAWTC	2 cut(s)	617, 673
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
PshBI	ATTAAT	1 cut(s)	567
PsiI	TTATAA	1 cut(s)	663
Psp1406I	AACGTT	1 cut(s)	76
PspPI	GGNCC	3 cut(s)	381, 433, 1378
PstNI	CAGNNNCTG	1 cut(s)	1450
PsuI	RGATCY	1 cut(s)	1309
RsaI	GTAC	2 cut(s)	1189, 1498
RsaNI	GTAC	2 cut(s)	1188, 1497
RseI	CAYNNNNRTG	2 cut(s)	30, 424
SaqAI	TTAA	7 cut(s)	567, 747, 828, 873, 885, 1293, 1350
Sau3AI	GATC	1 cut(s)	1309
Sau96I	GGNCC	3 cut(s)	381, 433, 1378
SchI	GAGTC	1 cut(s)	389
SduI	GDGCHC	1 cut(s)	1104
SfaNI	GCATC	3 cut(s)	589, 1245, 1455
SfuI	TTCGAA	1 cut(s)	423
SinI	GGWCC	1 cut(s)	1378
SmiMI	CAYNNNNRTG	2 cut(s)	30, 424
SmlI	CTYRAG	2 cut(s)	64, 1349
SmoI	CTYRAG	2 cut(s)	64, 1349
Sse9I	AATT	9 cut(s)	467, 557, 629, 796, 803, 947, 1117, 1224, 1294
SseBI	AGGCCT	1 cut(s)	646
SsiI	CCGC	3 cut(s)	436, 457, 625
SspI	AATATT	1 cut(s)	772
SspMI	CTAG	2 cut(s)	648, 1382
StuI	AGGCCT	1 cut(s)	646
StyI	CCWWGG	2 cut(s)	816, 1492
TaaI	ACNGT	2 cut(s)	13, 1333
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	5 cut(s)	393, 423, 465, 965, 1364
TasI	AATT	9 cut(s)	467, 557, 629, 796, 803, 947, 1117, 1224, 1294
TfiI	GAWTC	2 cut(s)	617, 673
Tru1I	TTAA	7 cut(s)	567, 747, 828, 873, 885, 1293, 1350
Tru9I	TTAA	7 cut(s)	567, 747, 828, 873, 885, 1293, 1350
TscAI	CASTG	2 cut(s)	457, 1338
TseFI	GTSAC	2 cut(s)	970, 1285
Tsp45I	GTSAC	2 cut(s)	970, 1285
TspDTI	ATGAA	7 cut(s)	17, 101, 478, 665, 749, 1245, 1262
TspRI	CASTG	2 cut(s)	457, 1338
Vha464I	CTTAAG	1 cut(s)	1349
VpaK11BI	GGWCC	1 cut(s)	1378
VspI	ATTAAT	1 cut(s)	567
XapI	RAATTY	2 cut(s)	947, 1117
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XspI	CTAG	2 cut(s)	648, 1382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.