Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009624

Physical Location & Seq

Genomic Coordinates Reverse (-)

19512969 .. 19515236

Gene Structure 2268 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43945

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGAGGAGGTTCCGAAAACCAAAGCTGATACCTTTACTGGAGCAAAAGCCTCCAACACTCCCACAGCTCTCTCCAATCCCAAACCCATCTCTCCCAAAACCCCGACAACACCCATCACCACCACCTTCCCCAATCCTCACTCTCTCCCACACCTCAAACCACACCCACCTCCTCACCTTCATCAAAACCCACATCAAAAACCCACCTCTCTCCCCCAAAACCCTTCTCCATTTCCTCAAGTCCAAGCTCCACCACCACCCCACCTTCACCCATTTCGACTTCCACGTCTTCAACTGGGCCTCCTCCGTCGACTCCTTCCGCCACGACCACTCCACTTTCGAATGGATGGTCTGCACTCTCGCAACCACCGACCGCTTCGCCGAGCTGGGCCATCTCATCGGTTTCATGGTTTCGAACCCATGCCCTTGTTCCGATGGTATTTTCTCTTGCCCAAGAACAGAACCCATTTTCAAATTTGCGATTAGTGCTTATTGTAGAGTAGGGAGATTGGGCGATGCTGTTAGTGCTTTTGATTCCATGAGGAAATTGATTGATGGGAAGCCTAGTGTTGTGGTTTATAACATTGTGATTAATGGGTTTGTGAAATGTGGGGCACATGATAAGGCTTTGGGGTTTTATGAGAAGATGGGGAGGGATAGAGTAAGGGGTGATGTGTTTACTTTCAATATTTTGATTAGTAGTTATTGTCGAAATTCGCAATTCGGGTTGGCTTTGGAGTTGTTTAAGGAGATGAGGGAGAAGGGGTGTAGTCCCAATGTGGTTAGTTTCAATACTTTGATTAAGGGATTCTTTAGGGAGAGGAAGTTTGAGGATGGGATTGAGATGGCTTATGAGATGATTGACTTTGGGTGCAAGTTTTCGAGTGTGACTTGTGAGATTTTGGTTGATGGACTTTGTAGAGAAGGTCGGGTTGAGGAGGCGTGTGAGCTGTTGATTGATTTCTCGAGGAAAGGAGTGTTGCCTAGATTGTATGATTACTATGGCCTTGTTGAAGTGCTTTGTGGGGAAAGAAATTCGGGGAGAGCGTTGGAGGTTGTGGATGAGCTGTGGAGGACGGGAAATGTTCCGAGCTTGATTGCTTGTACCACTTTGGTTGAGGGTTTGAGGAGGTCAGCGAAGATTGATGAAGCTTTAGAAGTGATGGAAAGGATGCTTGAAGAGGGTATGGTTCCAGATATTGTGACTTTTAATTGCCTCCTTCAAGATCTTTGCAATTTGGGGAGAACTGAGGAAGCTGATAACCTTAGGTTGTTGTCTTCGAGTAAAGGCTTGGAGCTGGACGGCATGGCGTATACCATTTTGGTGTCTGGGTATTCAAGAAAAGGGAAAAAGAAGGAGGTGAAAGTGGTGGTGGATGAGATGCTGGACATGGGATTTATACCTGATCTTGCTACATATAATAGGTTGGTTGATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

479

Amino Acids

54.13

Weight (kDa)

7.54

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	188 - 237	2.6e-14	PPR repeat family
PPR_3	PF13812	214 - 268	3.3e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	224 - 270	1.3e-17	PPR repeat family
PPR_1	PF12854	224 - 252	1.3e-08	PPR repeat
PPR	PF01535	226 - 256	9.6e-10	PPR repeat
PPR_1	PF12854	254 - 286	2.6e-07	PPR repeat
PPR_2	PF13041	258 - 307	8.7e-12	PPR repeat family
PPR_1	PF12854	290 - 318	4.1e-07	PPR repeat
PPR_3	PF13812	352 - 408	3e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	363 - 412	1.3e-09	PPR repeat family
PPR_3	PF13812	428 - 476	7.5e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	437 - 479	5.5e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36240
fragaria_vesca	FvH4_6g18780
prunus_persica	Prupe.7G109800_v2.0.a1
pyrus_communis	pycom04g01140 pycom15g30020
rosa_chinensis	RchiOBHm_Chr3g0473791
rosa_laevigata	RLG00000015254 RLG00000023984
rosa_multiflora	Rmu_co8122080.1_g000001 Rmu_sc0001293.1_g000012 Rmu_sc0007035.1_g000006 Rmu_sc0007035.1_g000008
rosa_roxburghii	Rroxscaffold_1G00029320 Rroxscaffold_6G00407800
rosa_rugosa	Rorug03G0135500
rosa_samantha	Rh3BG214200 Rh3BG214500 Rh3CG210900 Rh3CG211100 Rh3DG210100 Rh3DG210300
rosa_wichuraiana	Rw3G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	579
AasI	GACNNNNNNGTC	1 cut(s)	284
AccI	GTMKAC	2 cut(s)	309, 1313
AciI	CCGC	2 cut(s)	319, 373
AcsI	RAATTY	3 cut(s)	473, 712, 1033
AfaI	GTAC	1 cut(s)	1105
AgsI	TTSAA	8 cut(s)	292, 472, 685, 790, 1013, 1178, 1223, 1338
AjiI	CACGTC	1 cut(s)	286
Ama87I	CYCGRG	1 cut(s)	964
AoxI	GGCC	3 cut(s)	297, 388, 1003
ApoI	RAATTY	3 cut(s)	473, 712, 1033
ArsI	GACNNNNNNTTYG	2 cut(s)	333, 365
AseI	ATTAAT	1 cut(s)	591
AspS9I	GGNCC	2 cut(s)	297, 388
AsuHPI	GGTGA	5 cut(s)	108, 166, 259, 680, 1372
AsuII	TTCGAA	2 cut(s)	339, 413
AvaI	CYCGRG	1 cut(s)	964
AxyI	CCTNAGG	1 cut(s)	1265
BaeGI	GKGCMC	1 cut(s)	616
BbsI	GAAGAC	2 cut(s)	280, 1269
BceAI	ACGGC	1 cut(s)	1318
BfaI	CTAG	2 cut(s)	564, 984
BglII	AGATCT	1 cut(s)	1225
BmeT110I	CYCGRG	1 cut(s)	964
BmgBI	CACGTC	1 cut(s)	286
BmgT120I	GGNCC	2 cut(s)	297, 388
BmiI	GGNNCC	2 cut(s)	11, 1191
BmrI	ACTGGG	1 cut(s)	304
BmsI	GCATC	3 cut(s)	505, 1161, 1371
BmuI	ACTGGG	1 cut(s)	304
BpiI	GAAGAC	2 cut(s)	280, 1269
BpmI	CTGGAG	1 cut(s)	59
Bpu14I	TTCGAA	2 cut(s)	339, 413
BpuEI	CTTGAG	1 cut(s)	221
BsaXI	ACNNNNNCTCC	8 cut(s)	284, 314, 314, 344, 749, 779, 809, 839
Bse1I	ACTGG	2 cut(s)	42, 299
Bse21I	CCTNAGG	1 cut(s)	1265
BseGI	GGATG	5 cut(s)	351, 838, 1066, 1176, 1381
BseMII	CTCAG	1 cut(s)	1239
BseNI	ACTGG	2 cut(s)	42, 299
BseRI	GAGGAG	5 cut(s)	19, 161, 292, 950, 1141
BseSI	GKGCMC	1 cut(s)	616
BseYI	CCCAGC	1 cut(s)	385
BsgI	GTGCAG	1 cut(s)	337
Bsh1285I	CGRYCG	1 cut(s)	373
BshFI	GGCC	3 cut(s)	299, 390, 1005
BsiEI	CGRYCG	1 cut(s)	373
BsiHKCI	CYCGRG	1 cut(s)	964
BslFI	GGGAC	1 cut(s)	756
BsmFI	GGGAC	1 cut(s)	756
BsnI	GGCC	3 cut(s)	299, 390, 1005
BsoBI	CYCGRG	1 cut(s)	964
Bsp119I	TTCGAA	2 cut(s)	339, 413
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp143I	GATC	2 cut(s)	1225, 1405
BspACI	CCGC	2 cut(s)	319, 373
BspANI	GGCC	3 cut(s)	299, 390, 1005
BspCNI	CTCAG	1 cut(s)	1240
BspLI	GGNNCC	2 cut(s)	11, 1191
BspT104I	TTCGAA	2 cut(s)	339, 413
BsrI	ACTGG	2 cut(s)	42, 299
BssMI	GATC	2 cut(s)	1225, 1405
BssNAI	GTATAC	1 cut(s)	1314
Bst1107I	GTATAC	1 cut(s)	1314
Bst6I	CTCTTC	1 cut(s)	1173
BstBI	TTCGAA	2 cut(s)	339, 413
BstDEI	CTNAG	2 cut(s)	1248, 1265
BstF5I	GGATG	5 cut(s)	351, 838, 1066, 1176, 1381
BstKTI	GATC	2 cut(s)	1228, 1408
BstMBI	GATC	2 cut(s)	1225, 1405
BstMCI	CGRYCG	1 cut(s)	373
BstMWI	GCNNNNNNNGC	2 cut(s)	485, 524
BstSLI	GKGCMC	1 cut(s)	616
BstV2I	GAAGAC	2 cut(s)	280, 1269
BstX2I	RGATCY	1 cut(s)	1225
BstYI	RGATCY	1 cut(s)	1225
BstZ17I	GTATAC	1 cut(s)	1314
Bsu36I	CCTNAGG	1 cut(s)	1265
BsuRI	GGCC	3 cut(s)	299, 390, 1005
BtgZI	GCGATG	1 cut(s)	528
BtrI	CACGTC	1 cut(s)	286
BtsCI	GGATG	5 cut(s)	351, 838, 1066, 1176, 1381
Cfr13I	GGNCC	2 cut(s)	297, 388
Csp6I	GTAC	1 cut(s)	1104
CspCI	CAANNNNNGTGG	2 cut(s)	1096, 1131
CviAII	CATG	6 cut(s)	406, 420, 538, 617, 1306, 1390
CviQI	GTAC	1 cut(s)	1104
DdeI	CTNAG	2 cut(s)	1248, 1265
DpnI	GATC	2 cut(s)	1227, 1407
DpnII	GATC	2 cut(s)	1225, 1405
DrdI	GACNNNNNNGTC	1 cut(s)	284
DseDI	GACNNNNNNGTC	1 cut(s)	284
Eam1104I	CTCTTC	1 cut(s)	1173
EarI	CTCTTC	1 cut(s)	1173
EciI	GGCGGA	1 cut(s)	308
Eco81I	CCTNAGG	1 cut(s)	1265
Eco88I	CYCGRG	1 cut(s)	964
FaeI	CATG	6 cut(s)	409, 423, 541, 620, 1309, 1393
FalI	AAGNNNNNCTT	2 cut(s)	794, 826
FaqI	GGGAC	1 cut(s)	756
FatI	CATG	6 cut(s)	405, 419, 537, 616, 1305, 1389
FblI	GTMKAC	2 cut(s)	309, 1313
FokI	GGATG	5 cut(s)	358, 845, 1073, 1183, 1388
FspBI	CTAG	2 cut(s)	564, 984
GsaI	CCCAGC	1 cut(s)	389
GsuI	CTGGAG	1 cut(s)	59
HaeIII	GGCC	3 cut(s)	299, 390, 1005
Hin1II	CATG	6 cut(s)	409, 423, 541, 620, 1309, 1393
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	1 cut(s)	1149
HinfI	GANTC	3 cut(s)	311, 533, 807
HphI	GGTGA	5 cut(s)	108, 166, 259, 680, 1372
Hpy166II	GTNNAC	3 cut(s)	310, 678, 1314
Hpy188I	TCNGA	3 cut(s)	14, 433, 1089
Hpy188III	TCNNGA	4 cut(s)	964, 1193, 1223, 1338
Hpy8I	GTNNAC	3 cut(s)	310, 678, 1314
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	9 cut(s)	135, 187, 233, 274, 325, 754, 917, 1229, 1348
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	3 cut(s)	354, 873, 1233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	485, 524
HpyF3I	CTNAG	2 cut(s)	1248, 1265
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	6 cut(s)	409, 423, 541, 620, 1309, 1393
Kzo9I	GATC	2 cut(s)	1225, 1405
LmnI	GCTCC	3 cut(s)	40, 252, 1294
LpnPI	CCDG	8 cut(s)	23, 280, 371, 1206, 1283, 1314, 1370, 1416
LweI	GCATC	3 cut(s)	505, 1161, 1371
MaeI	CTAG	2 cut(s)	564, 984
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	2 cut(s)	886, 1201
MalI	GATC	2 cut(s)	1227, 1407
MboI	GATC	2 cut(s)	1225, 1405
MboII	GAAGA	5 cut(s)	280, 655, 1150, 1190, 1269
MflI	RGATCY	1 cut(s)	1225
MhlI	GDGCHC	1 cut(s)	616
MluCI	AATT	7 cut(s)	473, 545, 712, 719, 1033, 1210, 1234
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	2 cut(s)	77, 1029
MseI	TTAA	4 cut(s)	591, 744, 801, 1209
MslI	CAYNNNNRTG	1 cut(s)	1322
MwoI	GCNNNNNNNGC	2 cut(s)	485, 524
NdeII	GATC	2 cut(s)	1225, 1405
NlaIII	CATG	6 cut(s)	409, 423, 541, 620, 1309, 1393
NlaIV	GGNNCC	2 cut(s)	11, 1191
NmeAIII	GCCGAG	1 cut(s)	406
NmuCI	GTSAC	2 cut(s)	886, 1201
NspV	TTCGAA	2 cut(s)	339, 413
PaeR7I	CTCGAG	1 cut(s)	964
PcsI	WCGNNNNNNNCGW	3 cut(s)	282, 366, 1043
PfeI	GAWTC	2 cut(s)	533, 807
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
PshBI	ATTAAT	1 cut(s)	591
PsiI	TTATAA	1 cut(s)	579
PspFI	CCCAGC	1 cut(s)	385
PspN4I	GGNNCC	2 cut(s)	11, 1191
PspPI	GGNCC	2 cut(s)	297, 388
PsuI	RGATCY	1 cut(s)	1225
RsaI	GTAC	1 cut(s)	1105
RsaNI	GTAC	1 cut(s)	1104
RseI	CAYNNNNRTG	1 cut(s)	1322
SalI	GTCGAC	1 cut(s)	308
SaqAI	TTAA	4 cut(s)	591, 744, 801, 1209
Sau3AI	GATC	2 cut(s)	1225, 1405
Sau96I	GGNCC	2 cut(s)	297, 388
SchI	GAGTC	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	616
SfaNI	GCATC	3 cut(s)	505, 1161, 1371
Sfr274I	CTCGAG	1 cut(s)	964
SfuI	TTCGAA	2 cut(s)	339, 413
SlaI	CTCGAG	1 cut(s)	964
SmiMI	CAYNNNNRTG	1 cut(s)	1322
SmlI	CTYRAG	2 cut(s)	236, 964
SmoI	CTYRAG	2 cut(s)	236, 964
Sse9I	AATT	7 cut(s)	473, 545, 712, 719, 1033, 1210, 1234
SsiI	CCGC	2 cut(s)	319, 373
SspI	AATATT	1 cut(s)	688
SspMI	CTAG	2 cut(s)	564, 984
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	8 cut(s)	276, 309, 339, 413, 709, 881, 965, 1280
TasI	AATT	7 cut(s)	473, 545, 712, 719, 1033, 1210, 1234
TfiI	GAWTC	2 cut(s)	533, 807
Tru1I	TTAA	4 cut(s)	591, 744, 801, 1209
Tru9I	TTAA	4 cut(s)	591, 744, 801, 1209
TseFI	GTSAC	2 cut(s)	886, 1201
Tsp45I	GTSAC	2 cut(s)	886, 1201
TspDTI	ATGAA	3 cut(s)	169, 394, 1161
TspGWI	ACGGA	1 cut(s)	295
VspI	ATTAAT	1 cut(s)	591
XapI	RAATTY	3 cut(s)	473, 712, 1033
XhoI	CTCGAG	1 cut(s)	964
XmiI	GTMKAC	2 cut(s)	309, 1313
XspI	CTAG	2 cut(s)	564, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.