Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007035.1

Orthogroup ID

OG0009624

Physical Location & Seq

Genomic Coordinates Forward (+)

39855 .. 40313

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007035.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgtgttgcttagctagattgtatgattattatggtcttgttgaagtgctttgtaggaaaagaaattcgggtagagcgttggaggtggtggatgagctgtggaggacaagaaatgttccgagcttattgattgcttgtaacactttggttgagggtttgaggaggtcagcgaggatcgatgaacctttagaagtgatggaaaggatgcttgaagagggtatggttccagattttgtgatttttaattgcctccttcaagatctttgcaatttggggagaactgaggaagctgataaccttaggttgttgtctttgagtaaaggcttggagctagacggcatggcttattttggtggttgggtattcaagagaagggaaaaagaatcggtgaaagtggtggtggatgagatgcttgataggtataaacttgctacatataataggttggcggatggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

152

Amino Acids

17.56

Weight (kDa)

5.19

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36240
fragaria_vesca	FvH4_6g18780
prunus_persica	Prupe.7G109800_v2.0.a1
pyrus_communis	pycom04g01140 pycom15g30020
rosa_chinensis	RchiOBHm_Chr3g0473791
rosa_laevigata	RLG00000015254 RLG00000023984
rosa_multiflora	Rmu_co8122080.1_g000001 Rmu_sc0001293.1_g000012 Rmu_sc0007035.1_g000006 Rmu_sc0007035.1_g000008
rosa_roxburghii	Rroxscaffold_1G00029320 Rroxscaffold_6G00407800
rosa_rugosa	Rorug03G0135500
rosa_samantha	Rh3BG214200 Rh3BG214500 Rh3CG210900 Rh3CG211100 Rh3DG210100 Rh3DG210300
rosa_wichuraiana	Rw3G017010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	449
AclWI	GGATC	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	64
AgsI	TTSAA	4 cut(s)	44, 212, 257, 367
AluBI	AGCT	5 cut(s)	14, 97, 123, 290, 331
AluI	AGCT	5 cut(s)	14, 97, 123, 290, 331
AlwI	GGATC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	400
AxyI	CCTNAGG	1 cut(s)	299
BccI	CCATC	2 cut(s)	190, 446
BceAI	ACGGC	1 cut(s)	352
BfaI	CTAG	2 cut(s)	15, 332
BglII	AGATCT	1 cut(s)	259
BlpI	GCTNAGC	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	225
BmsI	GCATC	2 cut(s)	195, 399
Bpu1102I	GCTNAGC	1 cut(s)	10
Bsa29I	ATCGAT	1 cut(s)	177
Bse21I	CCTNAGG	1 cut(s)	299
BseCI	ATCGAT	1 cut(s)	177
BseGI	GGATG	4 cut(s)	97, 210, 409, 457
BseMII	CTCAG	1 cut(s)	273
BseRI	GAGGAG	1 cut(s)	175
BshVI	ATCGAT	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	174, 259
Bsp1720I	GCTNAGC	1 cut(s)	10
BspACI	CCGC	1 cut(s)	449
BspCNI	CTCAG	1 cut(s)	274
BspDI	ATCGAT	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	225
BspPI	GGATC	1 cut(s)	182
BssMI	GATC	2 cut(s)	174, 259
Bst6I	CTCTTC	1 cut(s)	207
BstDEI	CTNAG	3 cut(s)	10, 282, 299
BstF5I	GGATG	4 cut(s)	97, 210, 409, 457
BstKTI	GATC	2 cut(s)	177, 262
BstMBI	GATC	2 cut(s)	174, 259
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
Bsu15I	ATCGAT	1 cut(s)	177
Bsu36I	CCTNAGG	1 cut(s)	299
BsuTUI	ATCGAT	1 cut(s)	177
BtsCI	GGATG	4 cut(s)	97, 210, 409, 457
ClaI	ATCGAT	1 cut(s)	177
CviAII	CATG	1 cut(s)	340
CviJI	RGCY	7 cut(s)	14, 97, 123, 290, 324, 331, 344
CviKI_1	RGCY	7 cut(s)	14, 97, 123, 290, 324, 331, 344
DdeI	CTNAG	3 cut(s)	10, 282, 299
DpnI	GATC	2 cut(s)	176, 261
DpnII	GATC	2 cut(s)	174, 259
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco81I	CCTNAGG	1 cut(s)	299
FaeI	CATG	1 cut(s)	343
FaiI	YATR	7 cut(s)	24, 33, 221, 341, 423, 436, 438
FatI	CATG	1 cut(s)	339
FokI	GGATG	3 cut(s)	104, 217, 416
FspBI	CTAG	2 cut(s)	15, 332
Hin1II	CATG	1 cut(s)	343
HinfI	GANTC	1 cut(s)	383
HphI	GGTGA	1 cut(s)	400
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	3 cut(s)	227, 257, 367
HpyAV	CCTTC	2 cut(s)	263, 366
HpyCH4V	TGCA	1 cut(s)	267
HpyF3I	CTNAG	3 cut(s)	10, 282, 299
Hsp92II	CATG	1 cut(s)	343
Kzo9I	GATC	2 cut(s)	174, 259
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	1 cut(s)	240
LweI	GCATC	2 cut(s)	195, 399
MaeI	CTAG	2 cut(s)	15, 332
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	2 cut(s)	176, 261
MboI	GATC	2 cut(s)	174, 259
MboII	GAAGA	1 cut(s)	224
MflI	RGATCY	1 cut(s)	259
MluCI	AATT	3 cut(s)	64, 244, 268
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	9 cut(s)	76, 96, 145, 153, 156, 165, 208, 260, 277
MseI	TTAA	1 cut(s)	243
NdeII	GATC	2 cut(s)	174, 259
NlaIII	CATG	1 cut(s)	343
NlaIV	GGNNCC	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	383
PspN4I	GGNNCC	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	259
SaqAI	TTAA	1 cut(s)	243
Sau3AI	GATC	2 cut(s)	174, 259
SfaNI	GCATC	2 cut(s)	195, 399
Sse9I	AATT	3 cut(s)	64, 244, 268
SsiI	CCGC	1 cut(s)	449
SspMI	CTAG	2 cut(s)	15, 332
TaqI	TCGA	1 cut(s)	177
TasI	AATT	3 cut(s)	64, 244, 268
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TspDTI	ATGAA	1 cut(s)	195
XapI	RAATTY	1 cut(s)	64
XspI	CTAG	2 cut(s)	15, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.