AT2G36305

CAAX protease self-immunity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005689
Physical Location & Seq
Forward (+)
15214386 .. 15216613
2228 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G36305.1

Sequence Viewer

Length: 936 bp
ATGGCCACCGATGGCGAGAGTATCTCGATGTCGTTGGCGGTGGCTACCTGCGTCGCGATGGCACTATTCTACGTTTTGATCCTTTACGTTCCCACCGTGATACTCCGTCTCCCGTCGGCTTCTTCTTACACCGAATTCATGATTCGGCGATTCATCTGCGCGGCCATTTGTACTGTAGCATCTCTCGTCTTCACAGCTTTTATACTTCCGATAAAAAGCTGGGAGGCCTCTTATATACTTGGAGTTTATGGCATAAGGAAAGATCATCTGTGGCAAGGAGTGGTGTATCCTCTTCTATTGACCTCGCTCGTTTATGCTGGGTCTTTGGTGTTGAAGTTGTTTACTCTCCTGGAATCATGGAAGGAAAATGGCGGAGGATGTAGTTCCTTTAATTACATCAGAAGCTTTTTCCAAACAATCCCTGCTTCGGTATTGACAAGTGCTTCTAATGTTTCCGTTTGGCGCAATTTTATCGTGGCACCAGTAACTGAGGAGCTGGTTTTCCGATCATGTATGATACCTTTGCTTCTGTGTGCTGGGTTTAGGATTAACACTGCCATCTTTCTGTGCCCAGTTCTCTTTAGCTTGGCTCACTTAAACCATTTTAGAGAGATGTACATCAGGCATAACCGCAGCTATCTCCGGGCTTCACTTATTGTTGGTCTTCAGCTTGGCTACACAGTCATTTTTGGTGCATATGCATCGTTTCTCTTCATCAGAACCGGACATCTTGCTGCTCCTTTGTTTGCTCATATATTTTGCAACTACATGGGATTGCCTGTGCTATACGCAAATGGAAAAGGTTTGGTGAGTGCAGCGTTCTTAGGCGGTGTGGTTGGGTTCGTCTTACTTCTCTTTCCTTTAACAAAGCCTCTCATGTACAACGATAGTACCAACGATTGTCCGTGTTGGCTTGGCTATTGTTTGTGGAATTGA

Protein Analysis

311

Amino Acids

34.55

Weight (kDa)

8.85

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rce1-like PF02517 151 - 257 1.3e-15 Type II CAAX prenyl endopeptidase Rce1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 56
AccB1I GGYRCC 1 cut(s) 478
AccII CGCG 2 cut(s) 56, 161
AciI CCGC 5 cut(s) 38, 161, 372, 631, 828
AclWI GGATC 1 cut(s) 73
AcoI YGGCCR 2 cut(s) 3, 162
AcsI RAATTY 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 650
AfaI GTAC 4 cut(s) 172, 617, 881, 892
AfiI CCNNNNNNNGG 1 cut(s) 427
AgsI TTSAA 1 cut(s) 334
AjnI CCWGG 1 cut(s) 348
AluBI AGCT 7 cut(s) 197, 219, 405, 496, 585, 636, 670
AluI AGCT 7 cut(s) 197, 219, 405, 496, 585, 636, 670
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 1 cut(s) 73
AlwNI CAGNNNCTG 1 cut(s) 488
AoxI GGCC 3 cut(s) 3, 162, 225
ApeKI GCWGC 3 cut(s) 633, 734, 815
ApoI RAATTY 1 cut(s) 134
AspLEI GCGC 2 cut(s) 161, 465
AsuC2I CCSGG 1 cut(s) 644
AsuHPI GGTGA 1 cut(s) 820
BaeGI GKGCMC 1 cut(s) 572
BaeI ACNNNNGTAYC 2 cut(s) 874, 907
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 478
BbsI GAAGAC 2 cut(s) 181, 656
BbvI GCAGC 3 cut(s) 645, 721, 827
BccI CCATC 3 cut(s) 5, 52, 566
BcgI CGANNNNNNTGC 6 cut(s) 138, 172, 454, 488, 684, 718
BciT130I CCWGG 1 cut(s) 350
BciVI GTATCC 1 cut(s) 297
BcnI CCSGG 1 cut(s) 644
BcoDI GTCTC 1 cut(s) 113
BfmI CTRYAG 1 cut(s) 174
BfuAI ACCTGC 1 cut(s) 56
BfuI GTATCC 1 cut(s) 297
BisI GCNGC 4 cut(s) 162, 634, 735, 816
BlsI GCNGC 4 cut(s) 163, 635, 736, 817
Bme1390I CCNGG 2 cut(s) 350, 644
BmiI GGNNCC 1 cut(s) 480
BmrFI CCNGG 2 cut(s) 350, 644
BmrI ACTGGG 1 cut(s) 566
BmsI GCATC 2 cut(s) 188, 710
BmuI ACTGGG 1 cut(s) 566
BpiI GAAGAC 2 cut(s) 181, 656
BplI GAGNNNNNCTC 2 cut(s) 8, 40
BpuMI CCSGG 1 cut(s) 644
BsaBI GATNNNNATC 1 cut(s) 617
BsaWI WCCGGW 1 cut(s) 722
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bsc4I CCNNNNNNNGG 1 cut(s) 427
Bse1I ACTGG 2 cut(s) 482, 572
Bse8I GATNNNNATC 1 cut(s) 617
BseBI CCWGG 1 cut(s) 350
BseGI GGATG 1 cut(s) 383
BseJI GATNNNNATC 1 cut(s) 617
BseLI CCNNNNNNNGG 1 cut(s) 427
BseMII CTCAG 1 cut(s) 480
BseNI ACTGG 2 cut(s) 482, 572
BseRI GAGGAG 1 cut(s) 506
BseSI GKGCMC 1 cut(s) 572
BseXI GCAGC 3 cut(s) 645, 721, 827
BseYI CCCAGC 3 cut(s) 219, 317, 536
BsgI GTGCAG 1 cut(s) 834
Bsh1236I CGCG 2 cut(s) 56, 161
BshFI GGCC 3 cut(s) 5, 164, 227
BshNI GGYRCC 1 cut(s) 478
BsiSI CCGG 2 cut(s) 643, 723
BslI CCNNNNNNNGG 1 cut(s) 427
BsmAI GTCTC 1 cut(s) 113
BsmBI CGTCTC 1 cut(s) 113
BsnI GGCC 3 cut(s) 5, 164, 227
Bsp1286I GDGCHC 1 cut(s) 572
Bsp1407I TGTACA 2 cut(s) 615, 879
Bsp143I GATC 3 cut(s) 78, 262, 506
Bsp68I TCGCGA 1 cut(s) 56
BspACI CCGC 5 cut(s) 38, 161, 372, 631, 828
BspANI GGCC 3 cut(s) 5, 164, 227
BspCNI CTCAG 1 cut(s) 481
BspFNI CGCG 2 cut(s) 56, 161
BspHI TCATGA 1 cut(s) 138
BspLI GGNNCC 1 cut(s) 480
BspMI ACCTGC 1 cut(s) 56
BspPI GGATC 1 cut(s) 73
BspT107I GGYRCC 1 cut(s) 478
BsrGI TGTACA 2 cut(s) 615, 879
BsrI ACTGG 2 cut(s) 482, 572
BssMI GATC 3 cut(s) 78, 262, 506
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 3 cut(s) 97, 175, 682
Bst6I CTCTTC 2 cut(s) 297, 716
BstAUI TGTACA 2 cut(s) 615, 879
BstDEI CTNAG 2 cut(s) 489, 823
BstF5I GGATG 1 cut(s) 383
BstFNI CGCG 2 cut(s) 56, 161
BstHHI GCGC 2 cut(s) 161, 465
BstKTI GATC 3 cut(s) 81, 265, 509
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 3 cut(s) 78, 262, 506
BstNI CCWGG 1 cut(s) 350
BstSCI CCNGG 2 cut(s) 348, 642
BstSFI CTRYAG 1 cut(s) 174
BstSLI GKGCMC 1 cut(s) 572
BstUI CGCG 2 cut(s) 56, 161
BstV1I GCAGC 3 cut(s) 645, 721, 827
BstV2I GAAGAC 2 cut(s) 181, 656
BsuI GTATCC 1 cut(s) 297
BsuRI GGCC 3 cut(s) 5, 164, 227
BtgZI GCGATG 1 cut(s) 71
BtsCI GGATG 1 cut(s) 383
BtsI GCAGTG 1 cut(s) 552
BtsIMutI CAGTG 1 cut(s) 552
BtuMI TCGCGA 1 cut(s) 56
BveI ACCTGC 1 cut(s) 56
CaiI CAGNNNCTG 1 cut(s) 488
CciI TCATGA 1 cut(s) 138
CfoI GCGC 2 cut(s) 161, 465
CseI GACGC 1 cut(s) 40
Csp6I GTAC 4 cut(s) 171, 616, 880, 891
CviAII CATG 5 cut(s) 139, 357, 510, 769, 877
CviQI GTAC 4 cut(s) 171, 616, 880, 891
DdeI CTNAG 2 cut(s) 489, 823
DpnI GATC 3 cut(s) 80, 264, 508
DpnII GATC 3 cut(s) 78, 262, 506
EaeI YGGCCR 2 cut(s) 3, 162
Eam1104I CTCTTC 2 cut(s) 297, 716
EarI CTCTTC 2 cut(s) 297, 716
EciI GGCGGA 1 cut(s) 387
Eco147I AGGCCT 1 cut(s) 227
Eco57I CTGAAG 1 cut(s) 650
EcoRI GAATTC 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 348
EcoT22I ATGCAT 1 cut(s) 703
Esp3I CGTCTC 1 cut(s) 113
FaeI CATG 5 cut(s) 142, 360, 513, 772, 880
FatI CATG 5 cut(s) 138, 356, 509, 768, 876
FauNDI CATATG 1 cut(s) 697
Fnu4HI GCNGC 4 cut(s) 162, 634, 735, 816
FokI GGATG 1 cut(s) 390
Fsp4HI GCNGC 4 cut(s) 162, 634, 735, 816
GlaI GCGC 2 cut(s) 160, 464
GluI GCNGC 4 cut(s) 162, 634, 735, 816
GsaI CCCAGC 3 cut(s) 223, 321, 540
HaeIII GGCC 3 cut(s) 5, 164, 227
HapII CCGG 2 cut(s) 643, 723
HgaI GACGC 1 cut(s) 40
HhaI GCGC 2 cut(s) 161, 465
Hin1II CATG 5 cut(s) 142, 360, 513, 772, 880
Hin6I GCGC 2 cut(s) 159, 463
HinP1I GCGC 2 cut(s) 159, 463
HindIII AAGCTT 1 cut(s) 403
HinfI GANTC 3 cut(s) 142, 150, 353
HpaII CCGG 2 cut(s) 643, 723
HphI GGTGA 1 cut(s) 820
Hpy166II GTNNAC 1 cut(s) 342
Hpy188I TCNGA 4 cut(s) 210, 401, 506, 719
Hpy188III TCNNGA 3 cut(s) 25, 55, 139
Hpy8I GTNNAC 1 cut(s) 342
Hpy99I CGWCG 2 cut(s) 56, 118
HpyAV CCTTC 1 cut(s) 355
HpyCH4III ACNGT 3 cut(s) 97, 175, 682
HpyCH4IV ACGT 2 cut(s) 72, 87
HpyCH4V TGCA 4 cut(s) 695, 701, 762, 815
HpyF3I CTNAG 2 cut(s) 489, 823
HpySE526I ACGT 2 cut(s) 72, 87
Hsp92II CATG 5 cut(s) 142, 360, 513, 772, 880
HspAI GCGC 2 cut(s) 159, 463
Kzo9I GATC 3 cut(s) 78, 262, 506
LmnI GCTCC 2 cut(s) 493, 742
Lsp1109I GCAGC 3 cut(s) 645, 721, 827
LweI GCATC 2 cut(s) 188, 710
MaeII ACGT 2 cut(s) 72, 87
MaeIII GTNAC 1 cut(s) 484
MalI GATC 3 cut(s) 80, 264, 508
MboI GATC 3 cut(s) 78, 262, 506
MboII GAAGA 5 cut(s) 114, 181, 284, 656, 703
MhlI GDGCHC 1 cut(s) 572
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 134, 391, 466, 931
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 7 cut(s) 217, 238, 300, 313, 368, 484, 882
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 703
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 390, 549, 596, 863
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 643, 723
MspR9I CCNGG 2 cut(s) 350, 644
MvaI CCWGG 1 cut(s) 350
MvnI CGCG 2 cut(s) 56, 161
NciI CCSGG 1 cut(s) 644
NdeI CATATG 1 cut(s) 697
NdeII GATC 3 cut(s) 78, 262, 506
NlaIII CATG 5 cut(s) 142, 360, 513, 772, 880
NlaIV GGNNCC 1 cut(s) 480
NruI TCGCGA 1 cut(s) 56
NsiI ATGCAT 1 cut(s) 703
PagI TCATGA 1 cut(s) 138
PceI AGGCCT 1 cut(s) 227
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PfeI GAWTC 3 cut(s) 142, 150, 353
PfoI TCCNGGA 1 cut(s) 348
PkrI GCNGC 4 cut(s) 163, 635, 736, 817
Psp6I CCWGG 1 cut(s) 348
PspFI CCCAGC 3 cut(s) 219, 317, 536
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 1 cut(s) 480
PstNI CAGNNNCTG 1 cut(s) 488
RruI TCGCGA 1 cut(s) 56
RsaI GTAC 4 cut(s) 172, 617, 881, 892
RsaNI GTAC 4 cut(s) 171, 616, 880, 891
SaqAI TTAA 4 cut(s) 390, 549, 596, 863
SatI GCNGC 4 cut(s) 162, 634, 735, 816
Sau3AI GATC 3 cut(s) 78, 262, 506
ScrFI CCNGG 2 cut(s) 350, 644
SduI GDGCHC 1 cut(s) 572
SfaNI GCATC 2 cut(s) 188, 710
SfcI CTRYAG 1 cut(s) 174
Sse9I AATT 4 cut(s) 134, 391, 466, 931
SseBI AGGCCT 1 cut(s) 227
SsiI CCGC 5 cut(s) 38, 161, 372, 631, 828
StuI AGGCCT 1 cut(s) 227
StyD4I CCNGG 2 cut(s) 348, 642
TaaI ACNGT 3 cut(s) 97, 175, 682
TaiI ACGT 2 cut(s) 75, 90
TaqI TCGA 1 cut(s) 26
TasI AATT 4 cut(s) 134, 391, 466, 931
TatI WGTACW 3 cut(s) 170, 615, 879
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 3 cut(s) 142, 150, 353
Tru1I TTAA 4 cut(s) 390, 549, 596, 863
Tru9I TTAA 4 cut(s) 390, 549, 596, 863
TscAI CASTG 1 cut(s) 559
TseI GCWGC 3 cut(s) 633, 734, 815
TspDTI ATGAA 3 cut(s) 127, 142, 703
TspGWI ACGGA 3 cut(s) 95, 445, 894
TspRI CASTG 1 cut(s) 559
XapI RAATTY 1 cut(s) 134
Zsp2I ATGCAT 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.