Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005689

Physical Location & Seq

Genomic Coordinates Reverse (-)

12209998 .. 12213263

Gene Structure 3266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18450.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGAAGACGGAGCTCTCTCAAAGCCAGCGGCGGTTTTGGCATGCGCCGCCATGGCTTCATTCTACGTCGGGATTCTCTACGCCCCGACTTTGATTCTTCGTCTTCCTCCTCCTTCCTCCCACACTAACTTTTTGATCCGACGGTTCATATGCGCCGGCGTTTCCTCCCTCGTCTCCGTCGTCGTTTCTGCCATACTCCTCCCTATTAAAAGCGGAGAAGCGTCGCAGTTGATAGGTGTATATGGCATCCGGATCGATCATATTTGGCAAGCCGTGGTTTTTCCTCTTGCATTGACAGCTCTTATGTATGCCGGATCCTTGACGTTCATGTCTCTATTATTGATTCATTCGTTGAGGGAAGACGTGAATTGTAGGGGAGGCCTTATTAAAAGTATCTCAGTAGAGGCTGTTGCCTCTTTGCGTTCAATTGCTTCCAGTGTTATGCATTGGCGTAATTATGTTGTGGCTCCAGTTACTGAAGAGTTGGTGTTTAGAGCGTGCATGATACCATTGCTTCTCTGTGCAGGATTCCAAAAAAACACCGTCATTTTTGTATGCCCTATATTCTTCAGTTTGGCTCATTTGAACCATCTAATGGATGTCTATAACAAGCAACAGAATAACTGGACCAGAGCCTGCATGATAATAGGTCTCCAGCTTGGATATACTGTGGTCTTCGGGTCATATGCCTCTTTTCTCTTCATTCGAACTGTTGCTCACATGTTTTGCAATATTATGGGATTGCCACTCCTAGTTTCACCAGGGAAAGGTATAGTAAGTCTGGCATTTTTAGCTGGATTGCTGGGATTCCTGTGGTTACTTTTTCCAATTACGAACTCGGGTTTGTATAATGATAGAACAGATACTTGTAGATGTTGGCAGGGATATTGTTCAGGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Abi

Protein Analysis

301

Amino Acids

32.81

Weight (kDa)

8.9

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rce1-like	PF02517	147 - 253	8.3e-16	Type II CAAX prenyl endopeptidase Rce1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36305 AT2G36305
fragaria_vesca	FvH4_6g18450 FvH4_6g18450 FvH4_6g18450 FvH4_6g18450 FvH4_6g18450 FvH4_6g18450
malus_domestica	MD12G1023600.v1.1 MD14G1020800.v1.1
prunus_persica	Prupe.7G112900_v2.0.a1 Prupe.7G112900_v2.0.a1 Prupe.7G112900_v2.0.a1 Prupe.7G112900_v2.0.a1
pyrus_communis	pycom12g02200 pycom14g02030
rosa_chinensis	RchiOBHm_Chr3g0472981
rosa_laevigata	RLG00000024040
rosa_multiflora	Rmu_sc0002332.1_g000002 Rmu_sc0034753.1_g000001
rosa_roxburghii	Rroxscaffold_6G00408430
rosa_rugosa	Rorug03G0130300 Rorug03G0130400
rosa_samantha	Rh3AG182200 Rh3BG208500 Rh3CG205500 Rh3DG167500
rosa_wichuraiana	Rw3G016100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	328
AccB7I	CCANNNNNTGG	1 cut(s)	595
AccIII	TCCGGA	1 cut(s)	249
AciI	CCGC	4 cut(s)	29, 32, 48, 213
AclWI	GGATC	4 cut(s)	130, 260, 309, 322
AcuI	CTGAAG	2 cut(s)	498, 553
AfiI	CCNNNNNNNGG	2 cut(s)	595, 767
AflIII	ACRYGT	1 cut(s)	720
AgsI	TTSAA	2 cut(s)	426, 586
AjiI	CACGTC	1 cut(s)	364
AjnI	CCWGG	1 cut(s)	760
AluBI	AGCT	4 cut(s)	14, 299, 658, 794
AluI	AGCT	4 cut(s)	14, 299, 658, 794
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	3 cut(s)	178, 336, 656
AlwI	GGATC	4 cut(s)	130, 260, 309, 322
AlwNI	CAGNNNCTG	2 cut(s)	476, 636
Ama87I	CYCGRG	1 cut(s)	838
Aor13HI	TCCGGA	1 cut(s)	249
AoxI	GGCC	1 cut(s)	379
AspLEI	GCGC	2 cut(s)	47, 155
AspS9I	GGNCC	1 cut(s)	627
AsuHPI	GGTGA	1 cut(s)	750
AsuII	TTCGAA	1 cut(s)	706
AvaI	CYCGRG	1 cut(s)	838
AvaII	GGWCC	1 cut(s)	627
BamHI	GGATCC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	16
BbsI	GAAGAC	4 cut(s)	12, 95, 366, 667
Bbv12I	GWGCWC	1 cut(s)	16
BccI	CCATC	1 cut(s)	597
BceAI	ACGGC	1 cut(s)	257
BcgI	CGANNNNNNTGC	2 cut(s)	235, 269
BciT130I	CCWGG	1 cut(s)	762
BcoDI	GTCTC	3 cut(s)	178, 336, 656
BfaI	CTAG	1 cut(s)	752
BglI	GCCNNNNNGGC	1 cut(s)	53
BisI	GCNGC	2 cut(s)	30, 48
BlsI	GCNGC	2 cut(s)	31, 49
Bme1390I	CCNGG	1 cut(s)	762
Bme18I	GGWCC	1 cut(s)	627
BmeT110I	CYCGRG	1 cut(s)	838
BmgBI	CACGTC	1 cut(s)	364
BmgT120I	GGNCC	1 cut(s)	627
BmiI	GGNNCC	2 cut(s)	316, 468
BmrFI	CCNGG	1 cut(s)	762
BmsI	GCATC	1 cut(s)	255
BpiI	GAAGAC	4 cut(s)	12, 95, 366, 667
BpmI	CTGGAG	2 cut(s)	453, 638
Bpu14I	TTCGAA	1 cut(s)	706
Bsa29I	ATCGAT	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	656
BsaJI	CCNNGG	3 cut(s)	51, 273, 761
BsaWI	WCCGGW	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	2 cut(s)	595, 767
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	3 cut(s)	435, 470, 629
Bse3DI	GCAATG	1 cut(s)	509
BseAI	TCCGGA	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	762
BseCI	ATCGAT	1 cut(s)	255
BseDI	CCNNGG	3 cut(s)	51, 273, 761
BseGI	GGATG	2 cut(s)	246, 604
BseLI	CCNNNNNNNGG	2 cut(s)	595, 767
BseMI	GCAATG	1 cut(s)	509
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	3 cut(s)	435, 470, 629
BseRI	GAGGAG	2 cut(s)	99, 188
BseYI	CCCAGC	1 cut(s)	802
BsgI	GTGCAG	1 cut(s)	543
BshFI	GGCC	1 cut(s)	381
BshVI	ATCGAT	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	16
BsiHKCI	CYCGRG	1 cut(s)	838
BsiSI	CCGG	3 cut(s)	156, 250, 312
BslI	CCNNNNNNNGG	2 cut(s)	595, 767
BsmAI	GTCTC	3 cut(s)	178, 336, 656
BsmBI	CGTCTC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	381
Bso31I	GGTCTC	1 cut(s)	656
BsoBI	CYCGRG	1 cut(s)	838
Bsp119I	TTCGAA	1 cut(s)	706
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp13I	TCCGGA	1 cut(s)	249
Bsp143I	GATC	4 cut(s)	135, 252, 256, 314
Bsp19I	CCATGG	1 cut(s)	51
BspACI	CCGC	4 cut(s)	29, 32, 48, 213
BspANI	GGCC	1 cut(s)	381
BspCNI	CTCAG	1 cut(s)	410
BspDI	ATCGAT	1 cut(s)	255
BspEI	TCCGGA	1 cut(s)	249
BspLI	GGNNCC	2 cut(s)	316, 468
BspPI	GGATC	4 cut(s)	130, 260, 309, 322
BspT104I	TTCGAA	1 cut(s)	706
BspTNI	GGTCTC	1 cut(s)	656
BsrDI	GCAATG	1 cut(s)	509
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	3 cut(s)	435, 470, 629
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	3 cut(s)	51, 273, 761
BssMI	GATC	4 cut(s)	135, 252, 256, 314
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	762
Bst4CI	ACNGT	4 cut(s)	144, 544, 670, 712
Bst6I	CTCTTC	2 cut(s)	474, 704
BstBI	TTCGAA	1 cut(s)	706
BstC8I	GCNNGC	6 cut(s)	27, 43, 157, 270, 499, 637
BstDEI	CTNAG	1 cut(s)	397
BstDSI	CCRYGG	2 cut(s)	51, 273
BstF5I	GGATG	2 cut(s)	246, 604
BstHHI	GCGC	2 cut(s)	47, 155
BstKTI	GATC	4 cut(s)	138, 255, 259, 317
BstMAI	GTCTC	3 cut(s)	178, 336, 656
BstMBI	GATC	4 cut(s)	135, 252, 256, 314
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 47, 53, 296, 791
BstNI	CCWGG	1 cut(s)	762
BstNSI	RCATGY	2 cut(s)	45, 724
BstSCI	CCNGG	1 cut(s)	760
BstV2I	GAAGAC	4 cut(s)	12, 95, 366, 667
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
Bsu15I	ATCGAT	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	381
BsuTUI	ATCGAT	1 cut(s)	255
BtgI	CCRYGG	2 cut(s)	51, 273
BtrI	CACGTC	1 cut(s)	364
BtsCI	GGATG	2 cut(s)	246, 604
BtsIMutI	CAGTG	1 cut(s)	442
Cac8I	GCNNGC	6 cut(s)	27, 43, 157, 270, 499, 637
CaiI	CAGNNNCTG	2 cut(s)	476, 636
CfoI	GCGC	2 cut(s)	47, 155
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	627
ClaI	ATCGAT	1 cut(s)	255
CseI	GACGC	1 cut(s)	210
CviAII	CATG	6 cut(s)	42, 52, 328, 502, 640, 721
DdeI	CTNAG	1 cut(s)	397
DpnI	GATC	4 cut(s)	137, 254, 258, 316
DpnII	GATC	4 cut(s)	135, 252, 256, 314
DrdI	GACNNNNNNGTC	1 cut(s)	328
DseDI	GACNNNNNNGTC	1 cut(s)	328
Eam1104I	CTCTTC	2 cut(s)	474, 704
EarI	CTCTTC	2 cut(s)	474, 704
Ecl136II	GAGCTC	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	51
Eco147I	AGGCCT	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	16
Eco31I	GGTCTC	1 cut(s)	656
Eco47I	GGWCC	1 cut(s)	627
Eco53kI	GAGCTC	1 cut(s)	14
Eco57I	CTGAAG	2 cut(s)	498, 553
Eco88I	CYCGRG	1 cut(s)	838
EcoICRI	GAGCTC	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	760
EcoT14I	CCWWGG	1 cut(s)	51
EcoT22I	ATGCAT	1 cut(s)	447
EcoT38I	GRGCYC	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	51
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	6 cut(s)	45, 55, 331, 505, 643, 724
FatI	CATG	6 cut(s)	41, 51, 327, 501, 639, 720
FauNDI	CATATG	2 cut(s)	149, 685
Fnu4HI	GCNGC	2 cut(s)	30, 48
FokI	GGATG	2 cut(s)	233, 611
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	2 cut(s)	30, 48
FspBI	CTAG	1 cut(s)	752
GlaI	GCGC	2 cut(s)	46, 154
GluI	GCNGC	2 cut(s)	30, 48
GsaI	CCCAGC	1 cut(s)	806
GsuI	CTGGAG	2 cut(s)	453, 638
HaeIII	GGCC	1 cut(s)	381
HapII	CCGG	3 cut(s)	156, 250, 312
HgaI	GACGC	1 cut(s)	210
HhaI	GCGC	2 cut(s)	47, 155
Hin1II	CATG	6 cut(s)	45, 55, 331, 505, 643, 724
Hin6I	GCGC	2 cut(s)	45, 153
HinP1I	GCGC	2 cut(s)	45, 153
HinfI	GANTC	5 cut(s)	73, 94, 343, 528, 807
HpaII	CCGG	3 cut(s)	156, 250, 312
HphI	GGTGA	1 cut(s)	750
Hpy188I	TCNGA	1 cut(s)	140
Hpy188III	TCNNGA	2 cut(s)	70, 250
Hpy99I	CGWCG	5 cut(s)	71, 144, 182, 185, 226
HpyAV	CCTTC	1 cut(s)	123
HpyCH4III	ACNGT	4 cut(s)	144, 544, 670, 712
HpyCH4IV	ACGT	3 cut(s)	66, 323, 363
HpyCH4V	TGCA	6 cut(s)	290, 445, 501, 524, 639, 729
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 47, 53, 296, 791
HpyF3I	CTNAG	1 cut(s)	397
HpySE526I	ACGT	3 cut(s)	66, 323, 363
Hsp92II	CATG	6 cut(s)	45, 55, 331, 505, 643, 724
HspAI	GCGC	2 cut(s)	45, 153
Kpn2I	TCCGGA	1 cut(s)	249
KroI	GCCGGC	1 cut(s)	155
KroNI	GCCGGC	1 cut(s)	157
Kzo9I	GATC	4 cut(s)	135, 252, 256, 314
LmnI	GCTCC	2 cut(s)	11, 472
LweI	GCATC	1 cut(s)	255
MaeI	CTAG	1 cut(s)	752
MaeII	ACGT	3 cut(s)	66, 323, 363
MaeIII	GTNAC	2 cut(s)	472, 816
MalI	GATC	4 cut(s)	137, 254, 258, 316
MboI	GATC	4 cut(s)	135, 252, 256, 314
MboII	GAAGA	8 cut(s)	17, 89, 95, 371, 491, 559, 667, 691
MfeI	CAATTG	1 cut(s)	426
MflI	RGATCY	1 cut(s)	314
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	4 cut(s)	367, 426, 454, 828
MmeI	TCCRAC	1 cut(s)	163
Mph1103I	ATGCAT	1 cut(s)	447
MreI	CGCCGGCG	1 cut(s)	155
MroI	TCCGGA	1 cut(s)	249
MroNI	GCCGGC	1 cut(s)	155
MseI	TTAA	2 cut(s)	207, 387
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	3 cut(s)	156, 250, 312
MspR9I	CCNGG	1 cut(s)	762
MunI	CAATTG	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	762
MwoI	GCNNNNNNNGC	5 cut(s)	38, 47, 53, 296, 791
NaeI	GCCGGC	1 cut(s)	157
NcoI	CCATGG	1 cut(s)	51
NdeI	CATATG	2 cut(s)	149, 685
NdeII	GATC	4 cut(s)	135, 252, 256, 314
NgoMIV	GCCGGC	1 cut(s)	155
NlaIII	CATG	6 cut(s)	45, 55, 331, 505, 643, 724
NlaIV	GGNNCC	2 cut(s)	316, 468
NsiI	ATGCAT	1 cut(s)	447
NspI	RCATGY	2 cut(s)	45, 724
NspV	TTCGAA	1 cut(s)	706
PaeI	GCATGC	1 cut(s)	45
PceI	AGGCCT	1 cut(s)	381
PciI	ACATGT	1 cut(s)	720
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PdiI	GCCGGC	1 cut(s)	157
PfeI	GAWTC	5 cut(s)	73, 94, 343, 528, 807
PflMI	CCANNNNNTGG	1 cut(s)	595
PkrI	GCNGC	2 cut(s)	31, 49
PscI	ACATGT	1 cut(s)	720
Psp124BI	GAGCTC	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	760
PspFI	CCCAGC	1 cut(s)	802
PspGI	CCWGG	1 cut(s)	760
PspN4I	GGNNCC	2 cut(s)	316, 468
PspPI	GGNCC	1 cut(s)	627
PstNI	CAGNNNCTG	2 cut(s)	476, 636
PsuI	RGATCY	1 cut(s)	314
SacI	GAGCTC	1 cut(s)	16
SaqAI	TTAA	2 cut(s)	207, 387
SatI	GCNGC	2 cut(s)	30, 48
Sau3AI	GATC	4 cut(s)	135, 252, 256, 314
Sau96I	GGNCC	1 cut(s)	627
ScrFI	CCNGG	1 cut(s)	762
SduI	GDGCHC	1 cut(s)	16
SfaNI	GCATC	1 cut(s)	255
SfuI	TTCGAA	1 cut(s)	706
SgrAI	CRCCGGYG	1 cut(s)	155
SinI	GGWCC	1 cut(s)	627
SphI	GCATGC	1 cut(s)	45
Sse9I	AATT	4 cut(s)	367, 426, 454, 828
SseBI	AGGCCT	1 cut(s)	381
SsiI	CCGC	4 cut(s)	29, 32, 48, 213
SspI	AATATT	1 cut(s)	733
SspMI	CTAG	1 cut(s)	752
SstI	GAGCTC	1 cut(s)	16
StuI	AGGCCT	1 cut(s)	381
StyD4I	CCNGG	1 cut(s)	760
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	4 cut(s)	144, 544, 670, 712
TaiI	ACGT	3 cut(s)	69, 326, 366
TaqI	TCGA	2 cut(s)	255, 706
TasI	AATT	4 cut(s)	367, 426, 454, 828
TauI	GCSGC	2 cut(s)	32, 50
TfiI	GAWTC	5 cut(s)	73, 94, 343, 528, 807
Tru1I	TTAA	2 cut(s)	207, 387
Tru9I	TTAA	2 cut(s)	207, 387
TscAI	CASTG	1 cut(s)	442
TspDTI	ATGAA	5 cut(s)	48, 136, 316, 335, 691
TspGWI	ACGGA	2 cut(s)	24, 166
TspRI	CASTG	1 cut(s)	442
Van91I	CCANNNNNTGG	1 cut(s)	595
VpaK11BI	GGWCC	1 cut(s)	627
XceI	RCATGY	2 cut(s)	45, 724
XspI	CTAG	1 cut(s)	752
Zsp2I	ATGCAT	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.