Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005689

Physical Location & Seq

Genomic Coordinates Reverse (-)

1925083 .. 1928269

Gene Structure 3187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g02200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGACGACGGCAGCGTTTCGAAAGCAGTGGCAGTGGTGGCCTGCGGTGCCACGGCGCTGTTCTACGTAGCCATTCTCTACGCCCCGACTCTGATCCTCCGTCTCCCTCCTCCTCCTTCCTTCAAGAACTTCATGATCCGACGGTTCTTATGCGCCGCCATTTCATCCGTCGTCTCAATCGCCGTCTCCGCCCTCCTCCTCCCTATGAAAAGCAGGGAGGTATCATCTCTGTTAAGTGTATACGGAATCCGAACGGACCATATTTGGCAAGCCATGGTCTTTCCTCTGTCATTGACTGCTCTCATGTATGCTGGATCCTTGGTCCTTAAGGTGCTAATGCTAGTGAGTTCATTGAGGGAAGATATGAATTATGGAGGCTTTTCGTTCGAATATATCAAAAATGTCTCACAAGAGGCTCTTGCCTGCACGCGCTCAATGGCTTCCAATGTCTTGGTTTGGCGTAATTATATTGTGGCTCCTATTACCGAAGAGTTGGTGTTTAGAGCATGTATGATCCCATTACTTCTCTGCGGAGGATTCCAAAAATCCACAGTCATCTTTCTCTGCCCCATTTTCTTCAGTTTGGCACATTTCAATCATCTAATGGAGGTCTACAGCAGGCAAAACCATAACTTGATCAAAGCCTTTAAGGTTATAGGTCTCCAGCTTGGCTATACCGTCATCTTTGGCTCATATGCATCTTTTCTGTTCATTCAAACTGGACATTTTCTTGCTCCTTTAGTTGCTCACACGTTCTGCAACTTTATGGGATTGCCTGTGCTAGTTTCACGAGGGAAAGGGTTAATAGCTGTGGCGTCTGTAGCTGGAATTGTGGGGTTCCTGTGCTTACTTTTTCCAATGACGCACCCAGATTTGTATAATGATAGGACAGATAATTGCAGATGTTGGGAAGGATATTGTTCTGGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Abi

Protein Analysis

311

Amino Acids

34.19

Weight (kDa)

8.86

Isoelectric Point (pI)

38.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36305 AT2G36305
fragaria_vesca	FvH4_6g18450 FvH4_6g18450 FvH4_6g18450 FvH4_6g18450 FvH4_6g18450 FvH4_6g18450
malus_domestica	MD12G1023600.v1.1 MD14G1020800.v1.1
prunus_persica	Prupe.7G112900_v2.0.a1 Prupe.7G112900_v2.0.a1 Prupe.7G112900_v2.0.a1 Prupe.7G112900_v2.0.a1
pyrus_communis	pycom12g02200 pycom14g02030
rosa_chinensis	RchiOBHm_Chr3g0472981
rosa_laevigata	RLG00000024040
rosa_multiflora	Rmu_sc0002332.1_g000002 Rmu_sc0034753.1_g000001
rosa_roxburghii	Rroxscaffold_6G00408430
rosa_rugosa	Rorug03G0130300 Rorug03G0130400
rosa_samantha	Rh3AG182200 Rh3BG208500 Rh3CG205500 Rh3DG167500
rosa_wichuraiana	Rw3G016100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	47
AccI	GTMKAC	2 cut(s)	240, 612
AccII	CGCG	1 cut(s)	430
AciI	CCGC	4 cut(s)	45, 156, 189, 531
AclWI	GGATC	5 cut(s)	88, 130, 309, 322, 508
AcuI	CTGAAG	1 cut(s)	562
AcyI	GRCGYC	1 cut(s)	815
AflII	CTTAAG	1 cut(s)	326
AflIII	ACRYGT	1 cut(s)	750
AgsI	TTSAA	3 cut(s)	124, 595, 716
AluBI	AGCT	3 cut(s)	667, 809, 824
AluI	AGCT	3 cut(s)	667, 809, 824
Alw26I	GTCTC	5 cut(s)	107, 178, 190, 409, 665
AlwI	GGATC	5 cut(s)	88, 130, 309, 322, 508
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	12
AspLEI	GCGC	3 cut(s)	58, 155, 432
AspS9I	GGNCC	2 cut(s)	256, 322
AsuII	TTCGAA	2 cut(s)	20, 387
AvaII	GGWCC	2 cut(s)	256, 322
BamHI	GGATCC	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	47
BauI	CACGAG	1 cut(s)	789
BbvI	GCAGC	1 cut(s)	24
BceAI	ACGGC	3 cut(s)	25, 69, 167
BclI	TGATCA	1 cut(s)	636
BcoDI	GTCTC	5 cut(s)	107, 178, 190, 409, 665
BfaI	CTAG	2 cut(s)	341, 782
BfmI	CTRYAG	2 cut(s)	613, 819
BfoI	RGCGCY	1 cut(s)	59
BfrI	CTTAAG	1 cut(s)	326
BisI	GCNGC	2 cut(s)	13, 156
BlsI	GCNGC	2 cut(s)	14, 157
Bme18I	GGWCC	2 cut(s)	256, 322
BmgT120I	GGNCC	2 cut(s)	256, 322
BmiI	GGNNCC	4 cut(s)	49, 316, 477, 839
BmsI	GCATC	1 cut(s)	707
BpmI	CTGGAG	1 cut(s)	647
Bpu14I	TTCGAA	2 cut(s)	20, 387
BsaAI	YACGTR	1 cut(s)	67
BsaHI	GRCGYC	1 cut(s)	815
BsaI	GGTCTC	1 cut(s)	665
BsaJI	CCNNGG	3 cut(s)	51, 273, 318
Bse1I	ACTGG	1 cut(s)	724
BseDI	CCNNGG	3 cut(s)	51, 273, 318
BseGI	GGATG	1 cut(s)	164
BseNI	ACTGG	1 cut(s)	724
BseRI	GAGGAG	4 cut(s)	99, 102, 185, 188
BseXI	GCAGC	1 cut(s)	24
BsgI	GTGCAG	1 cut(s)	409
Bsh1236I	CGCG	1 cut(s)	430
BshFI	GGCC	1 cut(s)	41
BshNI	GGYRCC	1 cut(s)	47
BsmAI	GTCTC	5 cut(s)	107, 178, 190, 409, 665
BsmBI	CGTCTC	3 cut(s)	107, 178, 190
BsnI	GGCC	1 cut(s)	41
Bso31I	GGTCTC	1 cut(s)	665
Bsp119I	TTCGAA	2 cut(s)	20, 387
Bsp143I	GATC	5 cut(s)	93, 135, 314, 513, 636
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	4 cut(s)	45, 156, 189, 531
BspANI	GGCC	1 cut(s)	41
BspFNI	CGCG	1 cut(s)	430
BspHI	TCATGA	1 cut(s)	132
BspLI	GGNNCC	4 cut(s)	49, 316, 477, 839
BspPI	GGATC	5 cut(s)	88, 130, 309, 322, 508
BspT104I	TTCGAA	2 cut(s)	20, 387
BspT107I	GGYRCC	1 cut(s)	47
BspTI	CTTAAG	1 cut(s)	326
BspTNI	GGTCTC	1 cut(s)	665
BsrI	ACTGG	1 cut(s)	724
BssECI	CCNNGG	3 cut(s)	51, 273, 318
BssMI	GATC	5 cut(s)	93, 135, 314, 513, 636
BssNAI	GTATAC	1 cut(s)	241
BssNI	GRCGYC	1 cut(s)	815
BssSI	CACGAG	1 cut(s)	789
BssT1I	CCWWGG	2 cut(s)	273, 318
Bst1107I	GTATAC	1 cut(s)	241
Bst2BI	CACGAG	1 cut(s)	789
Bst4CI	ACNGT	3 cut(s)	144, 553, 679
Bst6I	CTCTTC	1 cut(s)	483
BstACI	GRCGYC	1 cut(s)	815
BstAFI	CTTAAG	1 cut(s)	326
BstBAI	YACGTR	1 cut(s)	67
BstBI	TTCGAA	2 cut(s)	20, 387
BstC8I	GCNNGC	5 cut(s)	43, 270, 424, 428, 620
BstDSI	CCRYGG	2 cut(s)	51, 273
BstF5I	GGATG	1 cut(s)	164
BstFNI	CGCG	1 cut(s)	430
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	3 cut(s)	58, 155, 432
BstKTI	GATC	5 cut(s)	96, 138, 317, 516, 639
BstMAI	GTCTC	5 cut(s)	107, 178, 190, 409, 665
BstMBI	GATC	5 cut(s)	93, 135, 314, 513, 636
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 47, 188, 821
BstNSI	RCATGY	1 cut(s)	510
BstSFI	CTRYAG	2 cut(s)	613, 819
BstSNI	TACGTA	1 cut(s)	67
BstUI	CGCG	1 cut(s)	430
BstV1I	GCAGC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	314
BstXI	CCANNNNNNTGG	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	314
BstZ17I	GTATAC	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	41
BtgI	CCRYGG	2 cut(s)	51, 273
BtsCI	GGATG	1 cut(s)	164
BtsI	GCAGTG	2 cut(s)	33, 39
BtsIMutI	CAGTG	2 cut(s)	33, 39
Cac8I	GCNNGC	5 cut(s)	43, 270, 424, 428, 620
CciI	TCATGA	1 cut(s)	132
CfoI	GCGC	3 cut(s)	58, 155, 432
Cfr13I	GGNCC	2 cut(s)	256, 322
CseI	GACGC	2 cut(s)	804, 871
CviAII	CATG	4 cut(s)	133, 274, 304, 507
DpnI	GATC	5 cut(s)	95, 137, 316, 515, 638
DpnII	GATC	5 cut(s)	93, 135, 314, 513, 636
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
EciI	GGCGGA	1 cut(s)	178
Eco105I	TACGTA	1 cut(s)	67
Eco130I	CCWWGG	2 cut(s)	273, 318
Eco31I	GGTCTC	1 cut(s)	665
Eco47I	GGWCC	2 cut(s)	256, 322
Eco57I	CTGAAG	1 cut(s)	562
EcoT14I	CCWWGG	2 cut(s)	273, 318
EcoT22I	ATGCAT	1 cut(s)	700
ErhI	CCWWGG	2 cut(s)	273, 318
Esp3I	CGTCTC	3 cut(s)	107, 178, 190
FaeI	CATG	4 cut(s)	136, 277, 307, 510
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FatI	CATG	4 cut(s)	132, 273, 303, 506
FauNDI	CATATG	1 cut(s)	694
FbaI	TGATCA	1 cut(s)	636
FblI	GTMKAC	2 cut(s)	240, 612
Fnu4HI	GCNGC	2 cut(s)	13, 156
FokI	GGATG	1 cut(s)	151
Fsp4HI	GCNGC	2 cut(s)	13, 156
FspBI	CTAG	2 cut(s)	341, 782
GlaI	GCGC	3 cut(s)	57, 154, 431
GluI	GCNGC	2 cut(s)	13, 156
GsuI	CTGGAG	1 cut(s)	647
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	41
HgaI	GACGC	2 cut(s)	804, 871
HhaI	GCGC	3 cut(s)	58, 155, 432
Hin1I	GRCGYC	1 cut(s)	815
Hin1II	CATG	4 cut(s)	136, 277, 307, 510
Hin6I	GCGC	3 cut(s)	56, 153, 430
HinP1I	GCGC	3 cut(s)	56, 153, 430
HinfI	GANTC	3 cut(s)	88, 246, 537
Hpy166II	GTNNAC	2 cut(s)	241, 613
Hpy188I	TCNGA	3 cut(s)	93, 140, 251
Hpy188III	TCNNGA	4 cut(s)	124, 133, 789, 924
Hpy8I	GTNNAC	2 cut(s)	241, 613
Hpy99I	CGWCG	3 cut(s)	11, 144, 173
HpyAV	CCTTC	3 cut(s)	126, 130, 905
HpyCH4III	ACNGT	3 cut(s)	144, 553, 679
HpyCH4IV	ACGT	2 cut(s)	66, 752
HpyCH4V	TGCA	4 cut(s)	426, 698, 759, 900
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 47, 188, 821
HpySE526I	ACGT	2 cut(s)	66, 752
Hsp92I	GRCGYC	1 cut(s)	815
Hsp92II	CATG	4 cut(s)	136, 277, 307, 510
HspAI	GCGC	3 cut(s)	56, 153, 430
Ksp22I	TGATCA	1 cut(s)	636
Kzo9I	GATC	5 cut(s)	93, 135, 314, 513, 636
LmnI	GCTCC	2 cut(s)	481, 739
Lsp1109I	GCAGC	1 cut(s)	24
LweI	GCATC	1 cut(s)	707
MaeI	CTAG	2 cut(s)	341, 782
MaeII	ACGT	2 cut(s)	66, 752
MalI	GATC	5 cut(s)	95, 137, 316, 515, 638
MboI	GATC	5 cut(s)	93, 135, 314, 513, 636
MboII	GAAGA	3 cut(s)	371, 500, 568
MflI	RGATCY	1 cut(s)	314
MluCI	AATT	4 cut(s)	367, 463, 828, 895
MlyI	GAGTC	1 cut(s)	82
MmeI	TCCRAC	1 cut(s)	163
Mph1103I	ATGCAT	1 cut(s)	700
MseI	TTAA	4 cut(s)	233, 327, 648, 803
MspCI	CTTAAG	1 cut(s)	326
MvnI	CGCG	1 cut(s)	430
MwoI	GCNNNNNNNGC	4 cut(s)	38, 47, 188, 821
NcoI	CCATGG	1 cut(s)	273
NdeI	CATATG	1 cut(s)	694
NdeII	GATC	5 cut(s)	93, 135, 314, 513, 636
NlaIII	CATG	4 cut(s)	136, 277, 307, 510
NlaIV	GGNNCC	4 cut(s)	49, 316, 477, 839
NsiI	ATGCAT	1 cut(s)	700
NspI	RCATGY	1 cut(s)	510
NspV	TTCGAA	2 cut(s)	20, 387
PagI	TCATGA	1 cut(s)	132
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	246, 537
PkrI	GCNGC	2 cut(s)	14, 157
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
Ppu21I	YACGTR	1 cut(s)	67
PspN4I	GGNNCC	4 cut(s)	49, 316, 477, 839
PspPI	GGNCC	2 cut(s)	256, 322
PsuI	RGATCY	1 cut(s)	314
SaqAI	TTAA	4 cut(s)	233, 327, 648, 803
SatI	GCNGC	2 cut(s)	13, 156
Sau3AI	GATC	5 cut(s)	93, 135, 314, 513, 636
Sau96I	GGNCC	2 cut(s)	256, 322
SchI	GAGTC	1 cut(s)	82
SfaNI	GCATC	1 cut(s)	707
SfcI	CTRYAG	2 cut(s)	613, 819
SfuI	TTCGAA	2 cut(s)	20, 387
SinI	GGWCC	2 cut(s)	256, 322
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
SnaBI	TACGTA	1 cut(s)	67
Sse9I	AATT	4 cut(s)	367, 463, 828, 895
SsiI	CCGC	4 cut(s)	45, 156, 189, 531
SspMI	CTAG	2 cut(s)	341, 782
StyI	CCWWGG	2 cut(s)	273, 318
TaaI	ACNGT	3 cut(s)	144, 553, 679
TaiI	ACGT	2 cut(s)	69, 755
TaqI	TCGA	2 cut(s)	20, 387
TasI	AATT	4 cut(s)	367, 463, 828, 895
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	2 cut(s)	246, 537
Tru1I	TTAA	4 cut(s)	233, 327, 648, 803
Tru9I	TTAA	4 cut(s)	233, 327, 648, 803
TscAI	CASTG	2 cut(s)	33, 39
TseI	GCWGC	1 cut(s)	12
TspDTI	ATGAA	6 cut(s)	121, 153, 221, 339, 380, 700
TspGWI	ACGGA	4 cut(s)	89, 157, 258, 269
TspRI	CASTG	2 cut(s)	33, 39
Vha464I	CTTAAG	1 cut(s)	326
VpaK11BI	GGWCC	2 cut(s)	256, 322
XceI	RCATGY	1 cut(s)	510
XmiI	GTMKAC	2 cut(s)	240, 612
XspI	CTAG	2 cut(s)	341, 782
Zsp2I	ATGCAT	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.