Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005689

Physical Location & Seq

Genomic Coordinates Forward (+)

10589009 .. 10593088

Gene Structure 4080 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0130400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1827 bp

ATGGCTGAGGGTTTTGAGCCCTACCATGTCCCTCAACAAAGCAGAAGAGATAAGCTCCGGTTCTTGCCGGGTCAACCCCACCCGGTTTGTGAAGAACCCGGACCTCACCACCTTCACGGTTGTGCTGCTGCTGCTTTCTATGATCCGACCTCAATCTCACTCATCTCCTCATCAGATTTGCTCACGTGCGCCGGCAGCTCCGTCAAAGGAGAGGGCCACGTGAATCTGATGGGTTACATGAACACTTCTTCAGCTTCCTCGTCTTTAAACAATTTTCGCCATCCCTACTTGGATCCTCAACCTTCGAATTTCGCACCGAATCCCAACTCTGTCCATGATATTACCGGTCTCAACAACATGTTTCTTTATCCGAGCCAACAGAATCATCATCATCTGAGAGACTTCCACGATGAAGCAGCTGTACTGTTCAAACCGGAACCGTTGTCCTTGTCTCTATCTTCACAACCTGTTGAGGTCCATAATCTGCAGAGGTACGGCTATTCGGGCATTAACGACGGTGGTCACGGGTCTAGAAGTCCGGGCCCAACTCCGCTGGGGCCGTTTACCGGCTACGCTTCGATTTTGAAGGGATCGAGGTTCTTGAAGCCAGCTCAGCAGTTGCTAGAGGAGTTCTGTGATGTGGGTAGTTCTAGTCGTGAAATTTATGCTGCTGTTAGTAGAATTATGACAGACGAGTCCTCATCCTTTTTGGACGATCCTCCTATTGAGAGCTTGGACGATCCGGTCAGTGTTGGCGGCGGTGACGGAGGTGAGAGTCGGAGAAAGAAGTCAAGGCTGATTTCCATGCTAGACGAGGTTTACAGGAGGTACAAGCAATACTATCACCAGATGACGGCAGTAGTGAACTCATTTGAGTATGTTGCTGGGCTTGGAAATGCAGCTCCCTATGCAAACTTGGCAATAAAGGCCATGAGTAGACACTTTACGTGTTTGAAGAATGCGATCACTGATCAGCTTCAATATTCAAGATCAAGTAGGGATGCTACAACTTATGTAAGCCGGGACAAAGATGAAGCTATTCCAATGCTCCGTAATACTACTCGAGGCATGTATACCCAGCACAGATCTTTCCAAAGCACGGAGTTTGGCGAGCACCAACCTGTTTGGCGACCTCAAAGGGGCCTTCCTGAGCGTGCAGTTACCGTTCTTAGGTCCTGGTTGTTCGAACACTTCTTGCATCCTTACCCTACTGATACAGATAAAATAATGCTGGCTAAACAAACTGGCCTATCACGGAGCCAGGTTTCAAATTGGTTCATTAATGCAAGAGTAAGGCTGTGGAAACCAATGGTGGAAGAGATACACATGCTAGAAACCCGGCAAGCTCATATTGCTTCACAGAAGTCGGGGGATCAAAATGCAGATAGGTCAGATGATCATGATCATTTACCATCCGCAAACTCAGTTGCATCTGAGAATCCTTCAACATCCACTTATAGAGCTCAAGACACAGCATCTAAGCGCCCAAGAAATGAATTTCCGGATGTCACAGTCGCGCGTAGTCATGAAGAGTTGAACATGTCTTACAATAACTTGCCAAGCCATCTGCATCATGTTGGTCATGTTGGTGCGAGTATGGCAGGAGGGAGTACTAATGGTGTGTCACTAACGCTTGGACTTCATCACCAAAATAATGGTATTGGTATGCCGGAGCCACCCTATGCTATCATTAATACAGCTCAACGCTTCGGACTTGGCCTCGAGGGAAATAGCGATGGGTACACAATGAGTGGCTTTGATGCACAAAATCGGCATTTTGGAAGGGACGTCATGGGAGGGCAACTTTTGCATGATTTTGTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Abi

Protein Analysis

608

Amino Acids

67.47

Weight (kDa)

6.42

Isoelectric Point (pI)

52.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	194 - 323	4.9e-39	Associated with HOX
Homeobox_KN	PF05920	393 - 432	5.5e-20	Homeobox KN domain
Homeodomain	PF00046	400 - 432	1.1e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36305 AT2G36305
fragaria_vesca	FvH4_6g18450 FvH4_6g18450 FvH4_6g18450 FvH4_6g18450 FvH4_6g18450 FvH4_6g18450
malus_domestica	MD12G1023600.v1.1 MD14G1020800.v1.1
prunus_persica	Prupe.7G112900_v2.0.a1 Prupe.7G112900_v2.0.a1 Prupe.7G112900_v2.0.a1 Prupe.7G112900_v2.0.a1
pyrus_communis	pycom12g02200 pycom14g02030
rosa_chinensis	RchiOBHm_Chr3g0472981
rosa_laevigata	RLG00000024040
rosa_multiflora	Rmu_sc0002332.1_g000002 Rmu_sc0034753.1_g000001
rosa_roxburghii	Rroxscaffold_6G00408430
rosa_rugosa	Rorug03G0130300 Rorug03G0130400
rosa_samantha	Rh3AG182200 Rh3BG208500 Rh3CG205500 Rh3DG167500
rosa_wichuraiana	Rw3G016100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	694, 743
AatII	GACGTC	1 cut(s)	1791
AbsI	CCTCGAGG	1 cut(s)	1721
AccI	GTMKAC	2 cut(s)	937, 1073
AccII	CGCG	2 cut(s)	1517, 1519
AccIII	TCCGGA	1 cut(s)	1501
AciI	CCGC	4 cut(s)	551, 756, 759, 1416
AclWI	GGATC	7 cut(s)	137, 287, 300, 598, 710, 734, 1380
AcsI	RAATTY	3 cut(s)	307, 660, 1496
AcuI	CTGAAG	1 cut(s)	234
AcvI	CACGTG	2 cut(s)	186, 220
AcyI	GRCGYC	1 cut(s)	1788
AfaI	GTAC	5 cut(s)	423, 494, 830, 1612, 1742
AfiI	CCNNNNNNNGG	5 cut(s)	566, 853, 1099, 1139, 1170
AflIII	ACRYGT	3 cut(s)	357, 947, 1539
AgeI	ACCGGT	1 cut(s)	344
AgsI	TTSAA	9 cut(s)	430, 586, 604, 955, 980, 987, 1269, 1446, 1537
AjnI	CCWGG	2 cut(s)	1175, 1260
AleI	CACNNNNGTG	1 cut(s)	120
Alw21I	GWGCWC	2 cut(s)	1116, 1465
Alw26I	GTCTC	3 cut(s)	353, 393, 456
AlwI	GGATC	7 cut(s)	137, 287, 300, 598, 710, 734, 1380
Ama87I	CYCGRG	2 cut(s)	1062, 1721
Aor13HI	TCCGGA	1 cut(s)	1501
AoxI	GGCC	7 cut(s)	214, 541, 557, 927, 1141, 1246, 1717
ApaI	GGGCCC	1 cut(s)	545
ApeKI	GCWGC	7 cut(s)	125, 128, 131, 195, 416, 668, 899
ApoI	RAATTY	3 cut(s)	307, 660, 1496
AseI	ATTAAT	2 cut(s)	1281, 1692
AsiGI	ACCGGT	1 cut(s)	344
Asp700I	GAANNNNTTC	1 cut(s)	1038
AspLEI	GCGC	3 cut(s)	191, 1485, 1519
AspS9I	GGNCC	8 cut(s)	101, 214, 475, 541, 542, 557, 1141, 1173
AsuC2I	CCSGG	6 cut(s)	69, 83, 99, 540, 1022, 1339
AsuHPI	GGTGA	5 cut(s)	98, 773, 782, 836, 1637
AsuII	TTCGAA	2 cut(s)	305, 1185
AvaI	CYCGRG	2 cut(s)	1062, 1721
AvaII	GGWCC	3 cut(s)	101, 475, 1173
BaeGI	GKGCMC	1 cut(s)	545
BamHI	GGATCC	1 cut(s)	292
BanII	GRGCYC	3 cut(s)	21, 545, 1465
BarI	GAAGNNNNNNTAC	2 cut(s)	405, 437
BbrPI	CACGTG	2 cut(s)	186, 220
Bbv12I	GWGCWC	2 cut(s)	1116, 1465
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	7 cut(s)	112, 115, 118, 207, 428, 655, 911
BccI	CCATC	5 cut(s)	223, 288, 1420, 1572, 1730
BceAI	ACGGC	3 cut(s)	511, 544, 870
BciT130I	CCWGG	2 cut(s)	1177, 1262
BclI	TGATCA	3 cut(s)	970, 1396, 1402
BcnI	CCSGG	6 cut(s)	69, 83, 99, 540, 1022, 1339
BcoDI	GTCTC	3 cut(s)	353, 393, 456
BfaI	CTAG	5 cut(s)	531, 623, 651, 809, 1331
BfmI	CTRYAG	1 cut(s)	485
BfoI	RGCGCY	1 cut(s)	1486
BglII	AGATCT	1 cut(s)	1085
BisI	GCNGC	8 cut(s)	126, 129, 132, 196, 417, 669, 757, 900
BlpI	GCTNAGC	1 cut(s)	612
BlsI	GCNGC	8 cut(s)	127, 130, 133, 197, 418, 670, 758, 901
BmcAI	AGTACT	1 cut(s)	1612
Bme1390I	CCNGG	8 cut(s)	69, 83, 99, 540, 1022, 1177, 1262, 1339
Bme18I	GGWCC	3 cut(s)	101, 475, 1173
BmeT110I	CYCGRG	2 cut(s)	1062, 1721
BmgT120I	GGNCC	8 cut(s)	101, 214, 475, 541, 542, 557, 1141, 1173
BmiI	GGNNCC	7 cut(s)	294, 438, 543, 558, 1142, 1259, 1674
BmrFI	CCNGG	8 cut(s)	69, 83, 99, 540, 1022, 1177, 1262, 1339
BmsI	GCATC	6 cut(s)	991, 1207, 1439, 1484, 1579, 1750
BoxI	GACNNNNGTC	1 cut(s)	519
BplI	GAGNNNNNCTC	2 cut(s)	39, 71
Bpu10I	CCTNAGC	2 cut(s)	6, 1149
Bpu1102I	GCTNAGC	1 cut(s)	612
Bpu14I	TTCGAA	2 cut(s)	305, 1185
BpuEI	CTTGAG	1 cut(s)	1449
BpuMI	CCSGG	6 cut(s)	69, 83, 99, 540, 1022, 1339
BsaAI	YACGTR	3 cut(s)	186, 220, 948
BsaBI	GATNNNNATC	1 cut(s)	1401
BsaHI	GRCGYC	1 cut(s)	1788
BsaI	GGTCTC	1 cut(s)	353
BsaWI	WCCGGW	5 cut(s)	57, 344, 433, 742, 1501
Bsc4I	CCNNNNNNNGG	5 cut(s)	566, 853, 1099, 1139, 1170
Bse118I	RCCGGY	3 cut(s)	191, 344, 566
Bse1I	ACTGG	1 cut(s)	1249
Bse8I	GATNNNNATC	1 cut(s)	1401
BseAI	TCCGGA	1 cut(s)	1501
BseBI	CCWGG	2 cut(s)	1177, 1262
BseGI	GGATG	7 cut(s)	280, 701, 1006, 1198, 1412, 1448, 1510
BseJI	GATNNNNATC	1 cut(s)	1401
BseLI	CCNNNNNNNGG	5 cut(s)	566, 853, 1099, 1139, 1170
BseMII	CTCAG	5 cut(s)	386, 626, 1140, 1425, 1437
BseNI	ACTGG	1 cut(s)	1249
BseRI	GAGGAG	2 cut(s)	157, 641
BseSI	GKGCMC	1 cut(s)	545
BseXI	GCAGC	7 cut(s)	112, 115, 118, 207, 428, 655, 911
BseYI	CCCAGC	3 cut(s)	553, 884, 1077
BsgI	GTGCAG	1 cut(s)	1176
Bsh1236I	CGCG	2 cut(s)	1517, 1519
BshFI	GGCC	7 cut(s)	216, 543, 559, 929, 1143, 1248, 1719
BshTI	ACCGGT	1 cut(s)	344
BsiHKAI	GWGCWC	2 cut(s)	1116, 1465
BsiHKCI	CYCGRG	2 cut(s)	1062, 1721
BslFI	GGGAC	3 cut(s)	14, 1037, 1799
BslI	CCNNNNNNNGG	5 cut(s)	566, 853, 1099, 1139, 1170
BsmAI	GTCTC	3 cut(s)	353, 393, 456
BsmFI	GGGAC	3 cut(s)	14, 1037, 1799
BsmI	GAATGC	1 cut(s)	964
BsnI	GGCC	7 cut(s)	216, 543, 559, 929, 1143, 1248, 1719
Bso31I	GGTCTC	1 cut(s)	353
BsoBI	CYCGRG	2 cut(s)	1062, 1721
Bsp119I	TTCGAA	2 cut(s)	305, 1185
Bsp120I	GGGCCC	1 cut(s)	541
Bsp1286I	GDGCHC	4 cut(s)	21, 545, 1116, 1465
Bsp13I	TCCGGA	1 cut(s)	1501
Bsp1720I	GCTNAGC	1 cut(s)	612
BspACI	CCGC	4 cut(s)	551, 756, 759, 1416
BspANI	GGCC	7 cut(s)	216, 543, 559, 929, 1143, 1248, 1719
BspCNI	CTCAG	5 cut(s)	387, 625, 1141, 1426, 1436
BspEI	TCCGGA	1 cut(s)	1501
BspFNI	CGCG	2 cut(s)	1517, 1519
BspHI	TCATGA	2 cut(s)	1399, 1525
BspLI	GGNNCC	7 cut(s)	294, 438, 543, 558, 1142, 1259, 1674
BspMAI	CTGCAG	1 cut(s)	489
BspPI	GGATC	7 cut(s)	137, 287, 300, 598, 710, 734, 1380
BspT104I	TTCGAA	2 cut(s)	305, 1185
BspTNI	GGTCTC	1 cut(s)	353
BsrFI	RCCGGY	3 cut(s)	191, 344, 566
BsrI	ACTGG	1 cut(s)	1249
BssAI	RCCGGY	3 cut(s)	191, 344, 566
BssNAI	GTATAC	1 cut(s)	1074
BssNI	GRCGYC	1 cut(s)	1788
Bst1107I	GTATAC	1 cut(s)	1074
Bst2UI	CCWGG	2 cut(s)	1177, 1262
Bst4CI	ACNGT	6 cut(s)	119, 426, 441, 518, 1165, 1513
Bst6I	CTCTTC	3 cut(s)	40, 1311, 1524
BstACI	GRCGYC	1 cut(s)	1788
BstAPI	GCANNNNNTGC	1 cut(s)	1807
BstBAI	YACGTR	3 cut(s)	186, 220, 948
BstBI	TTCGAA	2 cut(s)	305, 1185
BstC8I	GCNNGC	6 cut(s)	193, 609, 1112, 1155, 1233, 1344
BstDEI	CTNAG	8 cut(s)	6, 395, 612, 1149, 1169, 1423, 1434, 1479
BstF5I	GGATG	7 cut(s)	280, 701, 1006, 1198, 1412, 1448, 1510
BstFNI	CGCG	2 cut(s)	1517, 1519
BstH2I	RGCGCY	1 cut(s)	1486
BstHHI	GCGC	3 cut(s)	191, 1485, 1519
BstMAI	GTCTC	3 cut(s)	353, 393, 456
BstNI	CCWGG	2 cut(s)	1177, 1262
BstNSI	RCATGY	4 cut(s)	361, 1072, 1330, 1543
BstPAI	GACNNNNGTC	1 cut(s)	519
BstSCI	CCNGG	8 cut(s)	67, 81, 97, 538, 1020, 1175, 1260, 1337
BstSFI	CTRYAG	1 cut(s)	485
BstSLI	GKGCMC	1 cut(s)	545
BstUI	CGCG	2 cut(s)	1517, 1519
BstV1I	GCAGC	7 cut(s)	112, 115, 118, 207, 428, 655, 911
BstX2I	RGATCY	2 cut(s)	292, 1085
BstXI	CCANNNNNNTGG	1 cut(s)	1655
BstYI	RGATCY	2 cut(s)	292, 1085
BstZ17I	GTATAC	1 cut(s)	1074
BsuRI	GGCC	7 cut(s)	216, 543, 559, 929, 1143, 1248, 1719
BtgZI	GCGATG	1 cut(s)	1749
BtsCI	GGATG	7 cut(s)	280, 701, 1006, 1198, 1412, 1448, 1510
BtsIMutI	CAGTG	2 cut(s)	754, 966
Cac8I	GCNNGC	6 cut(s)	193, 609, 1112, 1155, 1233, 1344
CciI	TCATGA	2 cut(s)	1399, 1525
CfoI	GCGC	3 cut(s)	191, 1485, 1519
Cfr10I	RCCGGY	3 cut(s)	191, 344, 566
Cfr13I	GGNCC	8 cut(s)	101, 214, 475, 541, 542, 557, 1141, 1173
Csp6I	GTAC	5 cut(s)	422, 493, 829, 1611, 1741
CspAI	ACCGGT	1 cut(s)	344
CspCI	CAANNNNNGTGG	2 cut(s)	68, 103
CviQI	GTAC	5 cut(s)	422, 493, 829, 1611, 1741
DdeI	CTNAG	8 cut(s)	6, 395, 612, 1149, 1169, 1423, 1434, 1479
DraI	TTTAAA	1 cut(s)	267
DrdI	GACNNNNNNGTC	2 cut(s)	694, 743
DseDI	GACNNNNNNGTC	2 cut(s)	694, 743
Eam1104I	CTCTTC	3 cut(s)	40, 1311, 1524
EarI	CTCTTC	3 cut(s)	40, 1311, 1524
Ecl136II	GAGCTC	1 cut(s)	1463
Eco24I	GRGCYC	3 cut(s)	21, 545, 1465
Eco31I	GGTCTC	1 cut(s)	353
Eco47I	GGWCC	3 cut(s)	101, 475, 1173
Eco53kI	GAGCTC	1 cut(s)	1463
Eco57I	CTGAAG	1 cut(s)	234
Eco72I	CACGTG	2 cut(s)	186, 220
Eco88I	CYCGRG	2 cut(s)	1062, 1721
EcoICRI	GAGCTC	1 cut(s)	1463
EcoO109I	RGGNCCY	2 cut(s)	1141, 1173
EcoRII	CCWGG	2 cut(s)	1175, 1260
EcoT38I	GRGCYC	3 cut(s)	21, 545, 1465
FaqI	GGGAC	3 cut(s)	14, 1037, 1799
FbaI	TGATCA	3 cut(s)	970, 1396, 1402
FblI	GTMKAC	2 cut(s)	937, 1073
Fnu4HI	GCNGC	8 cut(s)	126, 129, 132, 196, 417, 669, 757, 900
FokI	GGATG	7 cut(s)	267, 688, 1013, 1185, 1399, 1435, 1517
FriOI	GRGCYC	3 cut(s)	21, 545, 1465
Fsp4HI	GCNGC	8 cut(s)	126, 129, 132, 196, 417, 669, 757, 900
FspBI	CTAG	5 cut(s)	531, 623, 651, 809, 1331
GlaI	GCGC	3 cut(s)	190, 1484, 1518
GluI	GCNGC	8 cut(s)	126, 129, 132, 196, 417, 669, 757, 900
GsaI	CCCAGC	3 cut(s)	557, 888, 1081
HaeII	RGCGCY	1 cut(s)	1486
HaeIII	GGCC	7 cut(s)	216, 543, 559, 929, 1143, 1248, 1719
HhaI	GCGC	3 cut(s)	191, 1485, 1519
Hin1I	GRCGYC	1 cut(s)	1788
Hin6I	GCGC	3 cut(s)	189, 1483, 1517
HinP1I	GCGC	3 cut(s)	189, 1483, 1517
HincII	GTYRAC	1 cut(s)	74
HindII	GTYRAC	1 cut(s)	74
HinfI	GANTC	6 cut(s)	223, 319, 382, 695, 775, 1438
HphI	GGTGA	5 cut(s)	98, 773, 782, 836, 1637
Hpy166II	GTNNAC	7 cut(s)	74, 564, 820, 865, 938, 1074, 1743
Hpy188I	TCNGA	9 cut(s)	147, 175, 228, 372, 396, 780, 1393, 1435, 1712
Hpy188III	TCNNGA	9 cut(s)	531, 601, 656, 987, 1148, 1400, 1466, 1502, 1526
Hpy8I	GTNNAC	7 cut(s)	74, 564, 820, 865, 938, 1074, 1743
Hpy99I	CGWCG	1 cut(s)	518
HpyAV	CCTTC	6 cut(s)	122, 312, 580, 1154, 1452, 1776
HpyCH4III	ACNGT	6 cut(s)	119, 426, 441, 518, 1165, 1513
HpyCH4IV	ACGT	4 cut(s)	185, 219, 947, 1788
HpyF3I	CTNAG	8 cut(s)	6, 395, 612, 1149, 1169, 1423, 1434, 1479
HpySE526I	ACGT	4 cut(s)	185, 219, 947, 1788
Hsp92I	GRCGYC	1 cut(s)	1788
HspAI	GCGC	3 cut(s)	189, 1483, 1517
Kpn2I	TCCGGA	1 cut(s)	1501
KroI	GCCGGC	1 cut(s)	191
KroNI	GCCGGC	1 cut(s)	193
Ksp22I	TGATCA	3 cut(s)	970, 1396, 1402
LmnI	GCTCC	6 cut(s)	60, 203, 907, 1053, 1257, 1672
Lsp1109I	GCAGC	7 cut(s)	112, 115, 118, 207, 428, 655, 911
LweI	GCATC	6 cut(s)	991, 1207, 1439, 1484, 1579, 1750
MaeI	CTAG	5 cut(s)	531, 623, 651, 809, 1331
MaeII	ACGT	4 cut(s)	185, 219, 947, 1788
MaeIII	GTNAC	6 cut(s)	233, 521, 761, 1159, 1507, 1623
MboII	GAAGA	7 cut(s)	57, 104, 240, 450, 967, 1328, 1541
MflI	RGATCY	2 cut(s)	292, 1085
MhlI	GDGCHC	4 cut(s)	21, 545, 1116, 1465
MluCI	AATT	6 cut(s)	271, 307, 660, 681, 1270, 1496
MlyI	GAGTC	2 cut(s)	704, 784
MmeI	TCCRAC	2 cut(s)	170, 758
MroI	TCCGGA	1 cut(s)	1501
MroNI	GCCGGC	1 cut(s)	191
MroXI	GAANNNNTTC	1 cut(s)	1038
MseI	TTAA	4 cut(s)	266, 510, 1281, 1692
MslI	CAYNNNNRTG	2 cut(s)	120, 1587
MspA1I	CMGCKG	2 cut(s)	419, 553
MspR9I	CCNGG	8 cut(s)	69, 83, 99, 540, 1022, 1177, 1262, 1339
Mva1269I	GAATGC	1 cut(s)	964
MvaI	CCWGG	2 cut(s)	1177, 1262
MvnI	CGCG	2 cut(s)	1517, 1519
NaeI	GCCGGC	1 cut(s)	193
NciI	CCSGG	6 cut(s)	69, 83, 99, 540, 1022, 1339
NgoMIV	GCCGGC	1 cut(s)	191
NlaIV	GGNNCC	7 cut(s)	294, 438, 543, 558, 1142, 1259, 1674
NmuCI	GTSAC	4 cut(s)	521, 761, 1507, 1623
NspI	RCATGY	4 cut(s)	361, 1072, 1330, 1543
NspV	TTCGAA	2 cut(s)	305, 1185
OliI	CACNNNNGTG	1 cut(s)	120
PaeR7I	CTCGAG	2 cut(s)	1062, 1721
PagI	TCATGA	2 cut(s)	1399, 1525
PciI	ACATGT	2 cut(s)	357, 1539
PctI	GAATGC	1 cut(s)	964
PdiI	GCCGGC	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	1038
PfeI	GAWTC	4 cut(s)	223, 319, 382, 1438
PinAI	ACCGGT	1 cut(s)	344
PkrI	GCNGC	8 cut(s)	127, 130, 133, 197, 418, 670, 758, 901
PleI	GAGTC	2 cut(s)	703, 783
PmaCI	CACGTG	2 cut(s)	186, 220
PmlI	CACGTG	2 cut(s)	186, 220
PpsI	GAGTC	2 cut(s)	703, 783
Ppu21I	YACGTR	3 cut(s)	186, 220, 948
PpuMI	RGGWCCY	1 cut(s)	1173
PscI	ACATGT	2 cut(s)	357, 1539
PshAI	GACNNNNGTC	1 cut(s)	519
PshBI	ATTAAT	2 cut(s)	1281, 1692
Psp124BI	GAGCTC	1 cut(s)	1465
Psp5II	RGGWCCY	1 cut(s)	1173
Psp6I	CCWGG	2 cut(s)	1175, 1260
PspCI	CACGTG	2 cut(s)	186, 220
PspFI	CCCAGC	3 cut(s)	553, 884, 1077
PspGI	CCWGG	2 cut(s)	1175, 1260
PspN4I	GGNNCC	7 cut(s)	294, 438, 543, 558, 1142, 1259, 1674
PspOMI	GGGCCC	1 cut(s)	541
PspPI	GGNCC	8 cut(s)	101, 214, 475, 541, 542, 557, 1141, 1173
PspPPI	RGGWCCY	1 cut(s)	1173
PspXI	VCTCGAGB	2 cut(s)	1062, 1721
PsrI	GAACNNNNNNTAC	2 cut(s)	1529, 1561
PstI	CTGCAG	1 cut(s)	489
PsuI	RGATCY	2 cut(s)	292, 1085
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	5 cut(s)	423, 494, 830, 1612, 1742
RsaNI	GTAC	5 cut(s)	422, 493, 829, 1611, 1741
RseI	CAYNNNNRTG	2 cut(s)	120, 1587
SacI	GAGCTC	1 cut(s)	1465
SaqAI	TTAA	4 cut(s)	266, 510, 1281, 1692
SatI	GCNGC	8 cut(s)	126, 129, 132, 196, 417, 669, 757, 900
Sau96I	GGNCC	8 cut(s)	101, 214, 475, 541, 542, 557, 1141, 1173
ScaI	AGTACT	1 cut(s)	1612
SchI	GAGTC	2 cut(s)	704, 784
ScrFI	CCNGG	8 cut(s)	69, 83, 99, 540, 1022, 1177, 1262, 1339
SduI	GDGCHC	4 cut(s)	21, 545, 1116, 1465
SfaNI	GCATC	6 cut(s)	991, 1207, 1439, 1484, 1579, 1750
SfcI	CTRYAG	1 cut(s)	485
Sfr274I	CTCGAG	2 cut(s)	1062, 1721
SfuI	TTCGAA	2 cut(s)	305, 1185
SinI	GGWCC	3 cut(s)	101, 475, 1173
SlaI	CTCGAG	2 cut(s)	1062, 1721
SmiMI	CAYNNNNRTG	2 cut(s)	120, 1587
SmlI	CTYRAG	3 cut(s)	1062, 1464, 1721
SmoI	CTYRAG	3 cut(s)	1062, 1464, 1721
Sse9I	AATT	6 cut(s)	271, 307, 660, 681, 1270, 1496
SsiI	CCGC	4 cut(s)	551, 756, 759, 1416
SspI	AATATT	1 cut(s)	983
SspMI	CTAG	5 cut(s)	531, 623, 651, 809, 1331
SstI	GAGCTC	1 cut(s)	1465
StyD4I	CCNGG	8 cut(s)	67, 81, 97, 538, 1020, 1175, 1260, 1337
TaaI	ACNGT	6 cut(s)	119, 426, 441, 518, 1165, 1513
TaiI	ACGT	4 cut(s)	188, 222, 950, 1791
TaqI	TCGA	6 cut(s)	305, 578, 593, 1063, 1185, 1722
TasI	AATT	6 cut(s)	271, 307, 660, 681, 1270, 1496
TatI	WGTACW	2 cut(s)	421, 1610
TauI	GCSGC	1 cut(s)	759
TfiI	GAWTC	4 cut(s)	223, 319, 382, 1438
Tru1I	TTAA	4 cut(s)	266, 510, 1281, 1692
Tru9I	TTAA	4 cut(s)	266, 510, 1281, 1692
TscAI	CASTG	2 cut(s)	754, 973
TseFI	GTSAC	4 cut(s)	521, 761, 1507, 1623
TseI	GCWGC	7 cut(s)	125, 128, 131, 195, 416, 668, 899
Tsp45I	GTSAC	4 cut(s)	521, 761, 1507, 1623
TspDTI	ATGAA	7 cut(s)	254, 426, 1047, 1267, 1509, 1542, 1631
TspGWI	ACGGA	5 cut(s)	190, 780, 1040, 1115, 1270
TspRI	CASTG	2 cut(s)	754, 973
VpaK11BI	GGWCC	3 cut(s)	101, 475, 1173
VspI	ATTAAT	2 cut(s)	1281, 1692
XapI	RAATTY	3 cut(s)	307, 660, 1496
XbaI	TCTAGA	1 cut(s)	530
XceI	RCATGY	4 cut(s)	361, 1072, 1330, 1543
XhoI	CTCGAG	2 cut(s)	1062, 1721
XmiI	GTMKAC	2 cut(s)	937, 1073
XmnI	GAANNNNTTC	1 cut(s)	1038
XspI	CTAG	5 cut(s)	531, 623, 651, 809, 1331
ZraI	GACGTC	1 cut(s)	1789
ZrmI	AGTACT	1 cut(s)	1612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.