Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0005689

Physical Location & Seq

Genomic Coordinates Reverse (-)

1578866 .. 1582079

Gene Structure 3214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g02030.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGACGACGGCGGCGTCTCGAAAGCAGTGGCGGTGGTGGCTTGCGCTGCCATGGCGCTATTCTACGTAGCTGTTCTCTACGCCCCGACTGTAATCCTCCGTCTTCCTCCTCCTCCTTCCTTCAAGAACTTCATGATCCGACGGTTCGTATGCGCCGCCATTTCATCCGTCGTCTCCGTCATCGTCTCCGCCCTCCTCCTCCATATGAAAAGCAGGGACGTATCATCTCTGTTAAGTGTATACGGAATCCGAACAGACCATATTTGGCAAGCTGTCGTCTTTCCTCTGTTGTTGACTGCTCTCGTGTACGCTGGATCCTTGGTCCTTAAGGCGCTAATGCTAGTGAGTTCATTGACGGAAGATATGAATTATGGTGGAGGCTTTTCGTTCGAATATATCAAGAATGTCTCACAAGAGGCTGTTGCCTGTACTCGTACAATGGCTTCCAATGTTTTGGTTTGGCGTAATTATATTGTGGCTCCTATTACCGAAGAGTTGGTGTTCAGAGCATGTATGATCCCATTACTTCTCTGCGGAGGATTCCAAAAATCCACAGTCATCTTTCTCTGCCCCATTTTCTTCAGTTTGGCACATTTAAACCATCTAATGGAGGTCTACAGCAAGCAAAACCATAACTTGATCAAAGCCTTCATGGTTATAGGTCTCCAGTTAGGCTATACGGTCGTCTTTGGCTCATATGCATCTTTTCTCTTCATTCAAACTGGAAATTTTCTTGCTCCTTTAGTTGCTCACACATTTTGCAACTTTATGGGTTTGCCTGTGCTAGTTTCACGAGGGAAAGGGTTAATAGCCGTTGCATCTGTAGCAGGAATTGTGGGTTTCCTGTGGTTACTTTTTCCAATGACGTACCCAGATTTGTATAATGACAGAACAGATAATTGCAGATGCTGGCAAGGATATTGTTCCGGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Abi

Protein Analysis

312

Amino Acids

34.17

Weight (kDa)

8.78

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36305 AT2G36305
fragaria_vesca	FvH4_6g18450 FvH4_6g18450 FvH4_6g18450 FvH4_6g18450 FvH4_6g18450 FvH4_6g18450
malus_domestica	MD12G1023600.v1.1 MD14G1020800.v1.1
prunus_persica	Prupe.7G112900_v2.0.a1 Prupe.7G112900_v2.0.a1 Prupe.7G112900_v2.0.a1 Prupe.7G112900_v2.0.a1
pyrus_communis	pycom12g02200 pycom14g02030
rosa_chinensis	RchiOBHm_Chr3g0472981
rosa_laevigata	RLG00000024040
rosa_multiflora	Rmu_sc0002332.1_g000002 Rmu_sc0034753.1_g000001
rosa_roxburghii	Rroxscaffold_6G00408430
rosa_rugosa	Rorug03G0130300 Rorug03G0130400
rosa_samantha	Rh3AG182200 Rh3BG208500 Rh3CG205500 Rh3DG167500
rosa_wichuraiana	Rw3G016100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	14
AccB7I	CCANNNNNTGG	1 cut(s)	607
AccI	GTMKAC	2 cut(s)	240, 615
AciI	CCGC	5 cut(s)	12, 32, 156, 189, 534
AclWI	GGATC	4 cut(s)	130, 309, 322, 511
AcsI	RAATTY	1 cut(s)	727
AcuI	CTGAAG	1 cut(s)	565
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	4 cut(s)	308, 430, 436, 869
AfiI	CCNNNNNNNGG	1 cut(s)	607
AflII	CTTAAG	1 cut(s)	326
AgsI	TTSAA	2 cut(s)	124, 719
AluBI	AGCT	2 cut(s)	71, 272
AluI	AGCT	2 cut(s)	71, 272
Alw26I	GTCTC	5 cut(s)	22, 178, 190, 412, 668
AlwI	GGATC	4 cut(s)	130, 309, 322, 511
AlwNI	CAGNNNCTG	1 cut(s)	909
ApeKI	GCWGC	1 cut(s)	47
ApoI	RAATTY	1 cut(s)	727
AspLEI	GCGC	4 cut(s)	47, 58, 155, 334
AspS9I	GGNCC	1 cut(s)	322
AsuII	TTCGAA	1 cut(s)	390
AvaII	GGWCC	1 cut(s)	322
BamHI	GGATCC	1 cut(s)	314
BarI	GAAGNNNNNNTAC	2 cut(s)	427, 459
BauI	CACGAG	2 cut(s)	302, 792
BbsI	GAAGAC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	1 cut(s)	609
BceAI	ACGGC	2 cut(s)	25, 797
BclI	TGATCA	1 cut(s)	639
BcoDI	GTCTC	5 cut(s)	22, 178, 190, 412, 668
BfaI	CTAG	2 cut(s)	341, 785
BfmI	CTRYAG	2 cut(s)	616, 822
BfoI	RGCGCY	2 cut(s)	59, 335
BfrI	CTTAAG	1 cut(s)	326
BisI	GCNGC	3 cut(s)	13, 48, 156
BlsI	GCNGC	3 cut(s)	14, 49, 157
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	2 cut(s)	316, 480
BmsI	GCATC	3 cut(s)	710, 827, 896
BpiI	GAAGAC	1 cut(s)	95
BpmI	CTGGAG	1 cut(s)	650
Bpu14I	TTCGAA	1 cut(s)	390
BsaAI	YACGTR	1 cut(s)	67
BsaHI	GRCGYC	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	668
BsaJI	CCNNGG	2 cut(s)	51, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	607
Bse1I	ACTGG	2 cut(s)	667, 727
BseDI	CCNNGG	2 cut(s)	51, 318
BseGI	GGATG	1 cut(s)	164
BseLI	CCNNNNNNNGG	1 cut(s)	607
BseNI	ACTGG	2 cut(s)	667, 727
BseRI	GAGGAG	4 cut(s)	99, 102, 185, 188
BseXI	GCAGC	1 cut(s)	34
Bsh1285I	CGRYCG	1 cut(s)	684
BsiEI	CGRYCG	1 cut(s)	684
BsiSI	CCGG	1 cut(s)	927
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	607
BsmAI	GTCTC	5 cut(s)	22, 178, 190, 412, 668
BsmBI	CGTCTC	3 cut(s)	22, 178, 190
BsmFI	GGGAC	1 cut(s)	230
Bso31I	GGTCTC	1 cut(s)	668
Bsp119I	TTCGAA	1 cut(s)	390
Bsp143I	GATC	4 cut(s)	135, 314, 516, 639
Bsp19I	CCATGG	1 cut(s)	51
BspACI	CCGC	5 cut(s)	12, 32, 156, 189, 534
BspHI	TCATGA	1 cut(s)	132
BspLI	GGNNCC	2 cut(s)	316, 480
BspPI	GGATC	4 cut(s)	130, 309, 322, 511
BspT104I	TTCGAA	1 cut(s)	390
BspTI	CTTAAG	1 cut(s)	326
BspTNI	GGTCTC	1 cut(s)	668
BsrI	ACTGG	2 cut(s)	667, 727
BssECI	CCNNGG	2 cut(s)	51, 318
BssMI	GATC	4 cut(s)	135, 314, 516, 639
BssNAI	GTATAC	1 cut(s)	241
BssNI	GRCGYC	1 cut(s)	15
BssSI	CACGAG	2 cut(s)	302, 792
BssT1I	CCWWGG	2 cut(s)	51, 318
Bst1107I	GTATAC	1 cut(s)	241
Bst2BI	CACGAG	2 cut(s)	302, 792
Bst4CI	ACNGT	4 cut(s)	91, 144, 556, 682
Bst6I	CTCTTC	2 cut(s)	486, 716
BstACI	GRCGYC	1 cut(s)	15
BstAFI	CTTAAG	1 cut(s)	326
BstBAI	YACGTR	1 cut(s)	67
BstBI	TTCGAA	1 cut(s)	390
BstC8I	GCNNGC	4 cut(s)	43, 270, 623, 911
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	164
BstH2I	RGCGCY	2 cut(s)	59, 335
BstHHI	GCGC	4 cut(s)	47, 58, 155, 334
BstKTI	GATC	4 cut(s)	138, 317, 519, 642
BstMAI	GTCTC	5 cut(s)	22, 178, 190, 412, 668
BstMBI	GATC	4 cut(s)	135, 314, 516, 639
BstMCI	CGRYCG	1 cut(s)	684
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 47, 53, 824
BstNSI	RCATGY	1 cut(s)	513
BstSFI	CTRYAG	2 cut(s)	616, 822
BstSNI	TACGTA	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	34
BstV2I	GAAGAC	1 cut(s)	95
BstX2I	RGATCY	1 cut(s)	314
BstXI	CCANNNNNNTGG	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	314
BstZ17I	GTATAC	1 cut(s)	241
BtgI	CCRYGG	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	164
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	4 cut(s)	43, 270, 623, 911
CaiI	CAGNNNCTG	1 cut(s)	909
CciI	TCATGA	1 cut(s)	132
CfoI	GCGC	4 cut(s)	47, 58, 155, 334
Cfr13I	GGNCC	1 cut(s)	322
CseI	GACGC	1 cut(s)	4
Csp6I	GTAC	4 cut(s)	307, 429, 435, 868
CviAII	CATG	4 cut(s)	52, 133, 510, 652
CviQI	GTAC	4 cut(s)	307, 429, 435, 868
DpnI	GATC	4 cut(s)	137, 316, 518, 641
DpnII	GATC	4 cut(s)	135, 314, 516, 639
DraI	TTTAAA	1 cut(s)	597
DrdI	GACNNNNNNGTC	1 cut(s)	14
DseDI	GACNNNNNNGTC	1 cut(s)	14
Eam1104I	CTCTTC	2 cut(s)	486, 716
EarI	CTCTTC	2 cut(s)	486, 716
EciI	GGCGGA	1 cut(s)	178
Eco105I	TACGTA	1 cut(s)	67
Eco130I	CCWWGG	2 cut(s)	51, 318
Eco31I	GGTCTC	1 cut(s)	668
Eco47I	GGWCC	1 cut(s)	322
Eco57I	CTGAAG	1 cut(s)	565
EcoT14I	CCWWGG	2 cut(s)	51, 318
EcoT22I	ATGCAT	1 cut(s)	703
ErhI	CCWWGG	2 cut(s)	51, 318
Esp3I	CGTCTC	3 cut(s)	22, 178, 190
FaeI	CATG	4 cut(s)	55, 136, 513, 655
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	4 cut(s)	51, 132, 509, 651
FauNDI	CATATG	2 cut(s)	204, 697
FbaI	TGATCA	1 cut(s)	639
FblI	GTMKAC	2 cut(s)	240, 615
Fnu4HI	GCNGC	3 cut(s)	13, 48, 156
FokI	GGATG	1 cut(s)	151
Fsp4HI	GCNGC	3 cut(s)	13, 48, 156
FspBI	CTAG	2 cut(s)	341, 785
GlaI	GCGC	4 cut(s)	46, 57, 154, 333
GluI	GCNGC	3 cut(s)	13, 48, 156
GsuI	CTGGAG	1 cut(s)	650
HaeII	RGCGCY	2 cut(s)	59, 335
HapII	CCGG	1 cut(s)	927
HgaI	GACGC	1 cut(s)	4
HhaI	GCGC	4 cut(s)	47, 58, 155, 334
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	4 cut(s)	55, 136, 513, 655
Hin6I	GCGC	4 cut(s)	45, 56, 153, 332
HinP1I	GCGC	4 cut(s)	45, 56, 153, 332
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HinfI	GANTC	2 cut(s)	246, 540
HpaII	CCGG	1 cut(s)	927
Hpy166II	GTNNAC	4 cut(s)	241, 294, 307, 616
Hpy188I	TCNGA	3 cut(s)	140, 251, 506
Hpy188III	TCNNGA	5 cut(s)	19, 124, 133, 400, 792
Hpy8I	GTNNAC	4 cut(s)	241, 294, 307, 616
Hpy99I	CGWCG	3 cut(s)	11, 144, 173
HpyAV	CCTTC	3 cut(s)	126, 130, 658
HpyCH4III	ACNGT	4 cut(s)	91, 144, 556, 682
HpyCH4IV	ACGT	3 cut(s)	66, 219, 866
HpyCH4V	TGCA	4 cut(s)	701, 762, 818, 903
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 47, 53, 824
HpySE526I	ACGT	3 cut(s)	66, 219, 866
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	4 cut(s)	55, 136, 513, 655
HspAI	GCGC	4 cut(s)	45, 56, 153, 332
Ksp22I	TGATCA	1 cut(s)	639
Kzo9I	GATC	4 cut(s)	135, 314, 516, 639
LmnI	GCTCC	2 cut(s)	484, 742
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	3 cut(s)	710, 827, 896
MaeI	CTAG	2 cut(s)	341, 785
MaeII	ACGT	3 cut(s)	66, 219, 866
MaeIII	GTNAC	1 cut(s)	849
MalI	GATC	4 cut(s)	137, 316, 518, 641
MboI	GATC	4 cut(s)	135, 314, 516, 639
MboII	GAAGA	5 cut(s)	95, 371, 503, 571, 703
MflI	RGATCY	1 cut(s)	314
MluCI	AATT	5 cut(s)	367, 466, 727, 831, 898
MmeI	TCCRAC	1 cut(s)	163
Mph1103I	ATGCAT	1 cut(s)	703
MseI	TTAA	4 cut(s)	233, 327, 596, 806
MspCI	CTTAAG	1 cut(s)	326
MspI	CCGG	1 cut(s)	927
MwoI	GCNNNNNNNGC	4 cut(s)	38, 47, 53, 824
NcoI	CCATGG	1 cut(s)	51
NdeI	CATATG	2 cut(s)	204, 697
NdeII	GATC	4 cut(s)	135, 314, 516, 639
NlaIII	CATG	4 cut(s)	55, 136, 513, 655
NlaIV	GGNNCC	2 cut(s)	316, 480
NsiI	ATGCAT	1 cut(s)	703
NspI	RCATGY	1 cut(s)	513
NspV	TTCGAA	1 cut(s)	390
PagI	TCATGA	1 cut(s)	132
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	246, 540
PflMI	CCANNNNNTGG	1 cut(s)	607
PkrI	GCNGC	3 cut(s)	14, 49, 157
Ppu21I	YACGTR	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	316, 480
PspPI	GGNCC	1 cut(s)	322
PstNI	CAGNNNCTG	1 cut(s)	909
PsuI	RGATCY	1 cut(s)	314
RsaI	GTAC	4 cut(s)	308, 430, 436, 869
RsaNI	GTAC	4 cut(s)	307, 429, 435, 868
SaqAI	TTAA	4 cut(s)	233, 327, 596, 806
SatI	GCNGC	3 cut(s)	13, 48, 156
Sau3AI	GATC	4 cut(s)	135, 314, 516, 639
Sau96I	GGNCC	1 cut(s)	322
SetI	ASST	7 cut(s)	69, 73, 222, 274, 615, 664, 869
SfaNI	GCATC	3 cut(s)	710, 827, 896
SfcI	CTRYAG	2 cut(s)	616, 822
SfuI	TTCGAA	1 cut(s)	390
SinI	GGWCC	1 cut(s)	322
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
SnaBI	TACGTA	1 cut(s)	67
Sse9I	AATT	5 cut(s)	367, 466, 727, 831, 898
SsiI	CCGC	5 cut(s)	12, 32, 156, 189, 534
SspMI	CTAG	2 cut(s)	341, 785
StyI	CCWWGG	2 cut(s)	51, 318
TaaI	ACNGT	4 cut(s)	91, 144, 556, 682
TaiI	ACGT	3 cut(s)	69, 222, 869
TaqI	TCGA	2 cut(s)	20, 390
TasI	AATT	5 cut(s)	367, 466, 727, 831, 898
TatI	WGTACW	1 cut(s)	428
TauI	GCSGC	2 cut(s)	15, 158
TfiI	GAWTC	2 cut(s)	246, 540
Tru1I	TTAA	4 cut(s)	233, 327, 596, 806
Tru9I	TTAA	4 cut(s)	233, 327, 596, 806
TscAI	CASTG	1 cut(s)	33
TseI	GCWGC	1 cut(s)	47
TspDTI	ATGAA	7 cut(s)	121, 153, 221, 339, 380, 640, 703
TspGWI	ACGGA	5 cut(s)	89, 157, 166, 258, 371
TspRI	CASTG	1 cut(s)	33
Van91I	CCANNNNNTGG	1 cut(s)	607
Vha464I	CTTAAG	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	322
XapI	RAATTY	1 cut(s)	727
XceI	RCATGY	1 cut(s)	513
XmiI	GTMKAC	2 cut(s)	240, 615
XspI	CTAG	2 cut(s)	341, 785
Zsp2I	ATGCAT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.