Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0005689

Physical Location & Seq

Genomic Coordinates Reverse (-)

2392270 .. 2395735

Gene Structure 3466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1023600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGACGACGGCGGCGTTTCGAAAGCAGTGGCAGTGGTGGCCTGCGCTGCCATGGCGCTGTTCTACGTAGCCATTCTCTACGCCCCGACTCTGATCCTCCGTCTCCCTCCTCCTCCTTCCTTCAAGAACTTCATGATCCGACGGTTCTTATGCGCCGCCATTTCATCCGTCGTCTCCGTCGTCGTCTCCTCCCTCCTACTCCCTATGAAAAGCAGGGACGTATCATCTCTGTTAAGTGTATACGGAATCCGAACGGACCATATTTGGCAAGCCATGGTCTTTCCTCTGTCTTTGACTGCTCTCATGTATGCTGGATCCTTGGTCCTTAAGGTGCTAATGCTAGTGAATTCATTGAGGGAAGATATGAATTATGGTGGAGGCTTTTCGTTCGAATATATCAAAAATGTCTCACAAGAGGCTGTTGCCTGCACGCGCTCAATGGCTTCCAATGTCTTGGTTTGGCGTAATTATATTGTGGCTCCTATTACCGAAGAGTTGGTGTTTAGAGCATGTATGATCCCATTACTTCTCTGCGGAGGATTCCAAAAATCCACAGTCATCTTACTCTGCCCCATTTTCTTTAGTTTGGCACATTTAAATCATCTAATGGAGGTCTACAGCAGGCAAAACTATAACTTGATGAAAGCCTTCATGGTTATAGGTCTCCAGCTTGGCTATACCGTCGTCTTTGGCTCATATGCATCTTTTCTCTTCATTCAAACTGGACATTTTCTTGCTCCTTTAGTTGCTCACGCATTCTGCAACTTTATGGGATTGCCTATGCTAGTTTCACGAGGGAAAGGGTTAATAGCCATGGCGTCTGTAGCTGGAATTGTGGGTTTCCTGTGCTTACTTTTTCCAATGACGCACCCAGATTTGTATAATGATAGGACAGATAATTGCAGATGTTGGCAAGGATATTGTTCTGGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Abi

Protein Analysis

312

Amino Acids

34.29

Weight (kDa)

8.86

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rce1-like	PF02517	151 - 257	2.6e-15	Type II CAAX prenyl endopeptidase Rce1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36305 AT2G36305
fragaria_vesca	FvH4_6g18450 FvH4_6g18450 FvH4_6g18450 FvH4_6g18450 FvH4_6g18450 FvH4_6g18450
malus_domestica	MD12G1023600.v1.1 MD14G1020800.v1.1
prunus_persica	Prupe.7G112900_v2.0.a1 Prupe.7G112900_v2.0.a1 Prupe.7G112900_v2.0.a1 Prupe.7G112900_v2.0.a1
pyrus_communis	pycom12g02200 pycom14g02030
rosa_chinensis	RchiOBHm_Chr3g0472981
rosa_laevigata	RLG00000024040
rosa_multiflora	Rmu_sc0002332.1_g000002 Rmu_sc0034753.1_g000001
rosa_roxburghii	Rroxscaffold_6G00408430
rosa_rugosa	Rorug03G0130300 Rorug03G0130400
rosa_samantha	Rh3AG182200 Rh3BG208500 Rh3CG205500 Rh3DG167500
rosa_wichuraiana	Rw3G016100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	240, 615
AccII	CGCG	1 cut(s)	433
AciI	CCGC	3 cut(s)	12, 156, 534
AclWI	GGATC	5 cut(s)	88, 130, 309, 322, 511
AcsI	RAATTY	1 cut(s)	346
AcyI	GRCGYC	1 cut(s)	818
AflII	CTTAAG	1 cut(s)	326
AgsI	TTSAA	2 cut(s)	124, 719
AluBI	AGCT	2 cut(s)	670, 827
AluI	AGCT	2 cut(s)	670, 827
Alw26I	GTCTC	5 cut(s)	107, 178, 190, 412, 668
AlwI	GGATC	5 cut(s)	88, 130, 309, 322, 511
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	47
ApoI	RAATTY	1 cut(s)	346
Asp700I	GAANNNNTTC	1 cut(s)	647
AspLEI	GCGC	4 cut(s)	47, 58, 155, 435
AspS9I	GGNCC	2 cut(s)	256, 322
AsuII	TTCGAA	2 cut(s)	20, 390
AvaII	GGWCC	2 cut(s)	256, 322
BamHI	GGATCC	1 cut(s)	314
BauI	CACGAG	1 cut(s)	792
BbvI	GCAGC	1 cut(s)	34
BceAI	ACGGC	1 cut(s)	25
BcoDI	GTCTC	5 cut(s)	107, 178, 190, 412, 668
BfaI	CTAG	2 cut(s)	341, 785
BfmI	CTRYAG	2 cut(s)	616, 822
BfoI	RGCGCY	1 cut(s)	59
BfrI	CTTAAG	1 cut(s)	326
BisI	GCNGC	3 cut(s)	13, 48, 156
BlsI	GCNGC	3 cut(s)	14, 49, 157
Bme18I	GGWCC	2 cut(s)	256, 322
BmgT120I	GGNCC	2 cut(s)	256, 322
BmiI	GGNNCC	2 cut(s)	316, 480
BmsI	GCATC	1 cut(s)	710
BpmI	CTGGAG	1 cut(s)	650
Bpu14I	TTCGAA	2 cut(s)	20, 390
BsaAI	YACGTR	1 cut(s)	67
BsaHI	GRCGYC	1 cut(s)	818
BsaI	GGTCTC	1 cut(s)	668
BsaJI	CCNNGG	4 cut(s)	51, 273, 318, 813
Bse1I	ACTGG	1 cut(s)	727
BseDI	CCNNGG	4 cut(s)	51, 273, 318, 813
BseGI	GGATG	1 cut(s)	164
BseNI	ACTGG	1 cut(s)	727
BseRI	GAGGAG	3 cut(s)	99, 102, 178
BseXI	GCAGC	1 cut(s)	34
BsgI	GTGCAG	1 cut(s)	412
Bsh1236I	CGCG	1 cut(s)	433
BshFI	GGCC	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	230
BsmAI	GTCTC	5 cut(s)	107, 178, 190, 412, 668
BsmBI	CGTCTC	3 cut(s)	107, 178, 190
BsmFI	GGGAC	1 cut(s)	230
BsmI	GAATGC	1 cut(s)	755
BsnI	GGCC	1 cut(s)	41
Bso31I	GGTCTC	1 cut(s)	668
Bsp119I	TTCGAA	2 cut(s)	20, 390
Bsp143I	GATC	4 cut(s)	93, 135, 314, 516
Bsp19I	CCATGG	3 cut(s)	51, 273, 813
BspACI	CCGC	3 cut(s)	12, 156, 534
BspANI	GGCC	1 cut(s)	41
BspFNI	CGCG	1 cut(s)	433
BspHI	TCATGA	1 cut(s)	132
BspLI	GGNNCC	2 cut(s)	316, 480
BspPI	GGATC	5 cut(s)	88, 130, 309, 322, 511
BspT104I	TTCGAA	2 cut(s)	20, 390
BspTI	CTTAAG	1 cut(s)	326
BspTNI	GGTCTC	1 cut(s)	668
BsrI	ACTGG	1 cut(s)	727
BssECI	CCNNGG	4 cut(s)	51, 273, 318, 813
BssMI	GATC	4 cut(s)	93, 135, 314, 516
BssNAI	GTATAC	1 cut(s)	241
BssNI	GRCGYC	1 cut(s)	818
BssSI	CACGAG	1 cut(s)	792
BssT1I	CCWWGG	4 cut(s)	51, 273, 318, 813
Bst1107I	GTATAC	1 cut(s)	241
Bst2BI	CACGAG	1 cut(s)	792
Bst4CI	ACNGT	3 cut(s)	144, 556, 682
Bst6I	CTCTTC	2 cut(s)	486, 716
BstACI	GRCGYC	1 cut(s)	818
BstAFI	CTTAAG	1 cut(s)	326
BstBAI	YACGTR	1 cut(s)	67
BstBI	TTCGAA	2 cut(s)	20, 390
BstC8I	GCNNGC	5 cut(s)	43, 270, 427, 431, 623
BstDSI	CCRYGG	3 cut(s)	51, 273, 813
BstF5I	GGATG	1 cut(s)	164
BstFNI	CGCG	1 cut(s)	433
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	4 cut(s)	47, 58, 155, 435
BstKTI	GATC	4 cut(s)	96, 138, 317, 519
BstMAI	GTCTC	5 cut(s)	107, 178, 190, 412, 668
BstMBI	GATC	4 cut(s)	93, 135, 314, 516
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 47, 53, 824
BstNSI	RCATGY	1 cut(s)	513
BstSFI	CTRYAG	2 cut(s)	616, 822
BstSNI	TACGTA	1 cut(s)	67
BstUI	CGCG	1 cut(s)	433
BstV1I	GCAGC	1 cut(s)	34
BstX2I	RGATCY	1 cut(s)	314
BstXI	CCANNNNNNTGG	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	314
BstZ17I	GTATAC	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	41
BtgI	CCRYGG	3 cut(s)	51, 273, 813
BtsCI	GGATG	1 cut(s)	164
BtsI	GCAGTG	2 cut(s)	33, 39
BtsIMutI	CAGTG	2 cut(s)	33, 39
Cac8I	GCNNGC	5 cut(s)	43, 270, 427, 431, 623
CciI	TCATGA	1 cut(s)	132
CfoI	GCGC	4 cut(s)	47, 58, 155, 435
Cfr13I	GGNCC	2 cut(s)	256, 322
CseI	GACGC	2 cut(s)	807, 874
CviAII	CATG	7 cut(s)	52, 133, 274, 304, 510, 652, 814
DpnI	GATC	4 cut(s)	95, 137, 316, 518
DpnII	GATC	4 cut(s)	93, 135, 314, 516
DraI	TTTAAA	1 cut(s)	597
Eam1104I	CTCTTC	2 cut(s)	486, 716
EarI	CTCTTC	2 cut(s)	486, 716
Eco105I	TACGTA	1 cut(s)	67
Eco130I	CCWWGG	4 cut(s)	51, 273, 318, 813
Eco31I	GGTCTC	1 cut(s)	668
Eco47I	GGWCC	2 cut(s)	256, 322
EcoRI	GAATTC	1 cut(s)	346
EcoT14I	CCWWGG	4 cut(s)	51, 273, 318, 813
EcoT22I	ATGCAT	1 cut(s)	703
ErhI	CCWWGG	4 cut(s)	51, 273, 318, 813
Esp3I	CGTCTC	3 cut(s)	107, 178, 190
FaeI	CATG	7 cut(s)	55, 136, 277, 307, 513, 655, 817
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	7 cut(s)	51, 132, 273, 303, 509, 651, 813
FauNDI	CATATG	1 cut(s)	697
FblI	GTMKAC	2 cut(s)	240, 615
Fnu4HI	GCNGC	3 cut(s)	13, 48, 156
FokI	GGATG	1 cut(s)	151
Fsp4HI	GCNGC	3 cut(s)	13, 48, 156
FspBI	CTAG	2 cut(s)	341, 785
GlaI	GCGC	4 cut(s)	46, 57, 154, 434
GluI	GCNGC	3 cut(s)	13, 48, 156
GsuI	CTGGAG	1 cut(s)	650
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	41
HgaI	GACGC	2 cut(s)	807, 874
HhaI	GCGC	4 cut(s)	47, 58, 155, 435
Hin1I	GRCGYC	1 cut(s)	818
Hin1II	CATG	7 cut(s)	55, 136, 277, 307, 513, 655, 817
Hin6I	GCGC	4 cut(s)	45, 56, 153, 433
HinP1I	GCGC	4 cut(s)	45, 56, 153, 433
HinfI	GANTC	3 cut(s)	88, 246, 540
Hpy166II	GTNNAC	2 cut(s)	241, 616
Hpy188I	TCNGA	3 cut(s)	93, 140, 251
Hpy188III	TCNNGA	4 cut(s)	124, 133, 792, 927
Hpy8I	GTNNAC	2 cut(s)	241, 616
Hpy99I	CGWCG	6 cut(s)	11, 144, 173, 182, 185, 686
HpyAV	CCTTC	3 cut(s)	126, 130, 658
HpyCH4III	ACNGT	3 cut(s)	144, 556, 682
HpyCH4IV	ACGT	2 cut(s)	66, 219
HpyCH4V	TGCA	4 cut(s)	429, 701, 762, 903
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 47, 53, 824
HpySE526I	ACGT	2 cut(s)	66, 219
Hsp92I	GRCGYC	1 cut(s)	818
Hsp92II	CATG	7 cut(s)	55, 136, 277, 307, 513, 655, 817
HspAI	GCGC	4 cut(s)	45, 56, 153, 433
Kzo9I	GATC	4 cut(s)	93, 135, 314, 516
LmnI	GCTCC	2 cut(s)	484, 742
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	1 cut(s)	710
MaeI	CTAG	2 cut(s)	341, 785
MaeII	ACGT	2 cut(s)	66, 219
MalI	GATC	4 cut(s)	95, 137, 316, 518
MboI	GATC	4 cut(s)	93, 135, 314, 516
MboII	GAAGA	3 cut(s)	371, 503, 703
MflI	RGATCY	1 cut(s)	314
MluCI	AATT	5 cut(s)	346, 367, 466, 831, 898
MlyI	GAGTC	1 cut(s)	82
MmeI	TCCRAC	1 cut(s)	163
Mph1103I	ATGCAT	1 cut(s)	703
MroXI	GAANNNNTTC	1 cut(s)	647
MseI	TTAA	4 cut(s)	233, 327, 596, 806
MspCI	CTTAAG	1 cut(s)	326
Mva1269I	GAATGC	1 cut(s)	755
MvnI	CGCG	1 cut(s)	433
MwoI	GCNNNNNNNGC	4 cut(s)	38, 47, 53, 824
NcoI	CCATGG	3 cut(s)	51, 273, 813
NdeI	CATATG	1 cut(s)	697
NdeII	GATC	4 cut(s)	93, 135, 314, 516
NlaIII	CATG	7 cut(s)	55, 136, 277, 307, 513, 655, 817
NlaIV	GGNNCC	2 cut(s)	316, 480
NsiI	ATGCAT	1 cut(s)	703
NspI	RCATGY	1 cut(s)	513
NspV	TTCGAA	2 cut(s)	20, 390
PagI	TCATGA	1 cut(s)	132
PcsI	WCGNNNNNNNCGW	2 cut(s)	12, 177
PctI	GAATGC	1 cut(s)	755
PdmI	GAANNNNTTC	1 cut(s)	647
PfeI	GAWTC	2 cut(s)	246, 540
PkrI	GCNGC	3 cut(s)	14, 49, 157
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
Ppu21I	YACGTR	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	316, 480
PspPI	GGNCC	2 cut(s)	256, 322
PsuI	RGATCY	1 cut(s)	314
SaqAI	TTAA	4 cut(s)	233, 327, 596, 806
SatI	GCNGC	3 cut(s)	13, 48, 156
Sau3AI	GATC	4 cut(s)	93, 135, 314, 516
Sau96I	GGNCC	2 cut(s)	256, 322
SchI	GAGTC	1 cut(s)	82
SetI	ASST	7 cut(s)	69, 222, 333, 615, 664, 672, 829
SfaNI	GCATC	1 cut(s)	710
SfcI	CTRYAG	2 cut(s)	616, 822
SfuI	TTCGAA	2 cut(s)	20, 390
SinI	GGWCC	2 cut(s)	256, 322
SmiI	ATTTAAAT	1 cut(s)	597
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
SnaBI	TACGTA	1 cut(s)	67
Sse9I	AATT	5 cut(s)	346, 367, 466, 831, 898
SsiI	CCGC	3 cut(s)	12, 156, 534
SspMI	CTAG	2 cut(s)	341, 785
StyI	CCWWGG	4 cut(s)	51, 273, 318, 813
SwaI	ATTTAAAT	1 cut(s)	597
TaaI	ACNGT	3 cut(s)	144, 556, 682
TaiI	ACGT	2 cut(s)	69, 222
TaqI	TCGA	2 cut(s)	20, 390
TasI	AATT	5 cut(s)	346, 367, 466, 831, 898
TauI	GCSGC	2 cut(s)	15, 158
TfiI	GAWTC	2 cut(s)	246, 540
Tru1I	TTAA	4 cut(s)	233, 327, 596, 806
Tru9I	TTAA	4 cut(s)	233, 327, 596, 806
TscAI	CASTG	2 cut(s)	33, 39
TseI	GCWGC	1 cut(s)	47
TspDTI	ATGAA	8 cut(s)	121, 153, 221, 339, 380, 640, 656, 703
TspGWI	ACGGA	5 cut(s)	89, 157, 166, 258, 269
TspRI	CASTG	2 cut(s)	33, 39
Vha464I	CTTAAG	1 cut(s)	326
VpaK11BI	GGWCC	2 cut(s)	256, 322
XapI	RAATTY	1 cut(s)	346
XceI	RCATGY	1 cut(s)	513
XmiI	GTMKAC	2 cut(s)	240, 615
XmnI	GAANNNNTTC	1 cut(s)	647
XspI	CTAG	2 cut(s)	341, 785
Zsp2I	ATGCAT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.