Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0005689

Physical Location & Seq

Genomic Coordinates Reverse (-)

17181365 .. 17185389

Gene Structure 4025 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG182200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGAGGACGGAGCTCTTTCAAAACCCGCGGCGGTGCTGGCTTGCGCCGCCATGGCTTCATTCTACGTCGGGATTCTCTACGCCCCCACTTTACTTCTTCGTCTTCCTCCTCCTTCTTCCCACAATAACTTTTTGATCCGACGGTTCATATGCGCCGGAGTTTCCTCCCTGGTCTCCGTCGTCGTTTCTGCTCTGCTCCTCCCCATTAAAAGCGGAGAAGCATCGGATTTGTTAGGTGTATATGGCATACGGACTGATCATATTTGGCAAGCCCTGGTCTTTCCTCTATCATTGACAGCGCTTATGTATGCCGGATCCTTGACATTCATGTCTCTATTATTGATTCATTCGTTGAGGGAAGACGTGAATTGTAGTGGAGGGCTTTCGTTTGACTATATCAAAAGTATCTCACTGGAGGCTGCTGCCTCTTTGCGTTCAATTTCTTCCAGTGTTATGCATTGGCGTAATTATGTTGTGGCTCCAGTTACGGAAGAGTTGGTGTTTAGAGCATGCATGATACCATTGCTTCTCTGCGCAGGATTCCAAAAAAACACAGTCATATTTTTATGCCCTATATTCTTCAGTTTGGCTCATTTGAACCATCTAATGGATGTCTATATCAAACAACAGAATAACTGGACCAAAGCCTGCATGATTATAGGTCTCCAGCTTGGATATACTGTGGTCTTTGGCTCATATGCATCTTTTCTCTTCATTCAAACAGGACATTTTATTGCTCCCGTAGTTGCTCACATGTTTTGCAATATTATGGGATTGCCAGTGTTAGTTTCACCAGGGAAAGATGTTGCTGGAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Abi

Protein Analysis

272

Amino Acids

29.51

Weight (kDa)

8.12

Isoelectric Point (pI)

51.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rce1-like	PF02517	151 - 257	1.2e-15	Type II CAAX prenyl endopeptidase Rce1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36305 AT2G36305
fragaria_vesca	FvH4_6g18450 FvH4_6g18450 FvH4_6g18450 FvH4_6g18450 FvH4_6g18450 FvH4_6g18450
malus_domestica	MD12G1023600.v1.1 MD14G1020800.v1.1
prunus_persica	Prupe.7G112900_v2.0.a1 Prupe.7G112900_v2.0.a1 Prupe.7G112900_v2.0.a1 Prupe.7G112900_v2.0.a1
pyrus_communis	pycom12g02200 pycom14g02030
rosa_chinensis	RchiOBHm_Chr3g0472981
rosa_laevigata	RLG00000024040
rosa_multiflora	Rmu_sc0002332.1_g000002 Rmu_sc0034753.1_g000001
rosa_roxburghii	Rroxscaffold_6G00408430
rosa_rugosa	Rorug03G0130300 Rorug03G0130400
rosa_samantha	Rh3AG182200 Rh3BG208500 Rh3CG205500 Rh3DG167500
rosa_wichuraiana	Rw3G016100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	328
Acc16I	TGCGCA	1 cut(s)	535
AccB7I	CCANNNNNTGG	1 cut(s)	607
AccII	CGCG	1 cut(s)	29
AciI	CCGC	5 cut(s)	27, 29, 32, 48, 213
AclWI	GGATC	3 cut(s)	130, 309, 322
AcuI	CTGAAG	1 cut(s)	565
AfeI	AGCGCT	1 cut(s)	300
AfiI	CCNNNNNNNGG	1 cut(s)	607
AflIII	ACRYGT	1 cut(s)	753
AgsI	TTSAA	4 cut(s)	21, 438, 598, 719
AjiI	CACGTC	1 cut(s)	364
AjnI	CCWGG	3 cut(s)	168, 273, 793
AluBI	AGCT	2 cut(s)	14, 670
AluI	AGCT	2 cut(s)	14, 670
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	3 cut(s)	178, 336, 668
AlwI	GGATC	3 cut(s)	130, 309, 322
Aor51HI	AGCGCT	1 cut(s)	300
ApeKI	GCWGC	2 cut(s)	419, 422
AspLEI	GCGC	4 cut(s)	47, 155, 301, 536
AspS9I	GGNCC	1 cut(s)	639
AsuHPI	GGTGA	1 cut(s)	783
AvaII	GGWCC	1 cut(s)	639
BamHI	GGATCC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	16
BbsI	GAAGAC	2 cut(s)	95, 366
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	2 cut(s)	406, 409
BccI	CCATC	1 cut(s)	609
BciT130I	CCWGG	3 cut(s)	170, 275, 795
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	3 cut(s)	178, 336, 668
BfoI	RGCGCY	1 cut(s)	302
BglI	GCCNNNNNGGC	1 cut(s)	53
BisI	GCNGC	4 cut(s)	30, 48, 420, 423
BlsI	GCNGC	4 cut(s)	31, 49, 421, 424
Bme1390I	CCNGG	3 cut(s)	170, 275, 795
Bme18I	GGWCC	1 cut(s)	639
BmgBI	CACGTC	1 cut(s)	364
BmgT120I	GGNCC	1 cut(s)	639
BmiI	GGNNCC	3 cut(s)	316, 480, 814
BmrFI	CCNGG	3 cut(s)	170, 275, 795
BmsI	GCATC	2 cut(s)	230, 710
BpiI	GAAGAC	2 cut(s)	95, 366
BpmI	CTGGAG	3 cut(s)	434, 465, 650
BsaI	GGTCTC	2 cut(s)	178, 668
BsaJI	CCNNGG	5 cut(s)	27, 51, 168, 273, 794
Bsc4I	CCNNNNNNNGG	1 cut(s)	607
Bse1I	ACTGG	5 cut(s)	417, 447, 482, 641, 779
Bse3DI	GCAATG	1 cut(s)	521
BseBI	CCWGG	3 cut(s)	170, 275, 795
BseDI	CCNNGG	5 cut(s)	27, 51, 168, 273, 794
BseGI	GGATG	1 cut(s)	616
BseLI	CCNNNNNNNGG	1 cut(s)	607
BseMI	GCAATG	1 cut(s)	521
BseNI	ACTGG	5 cut(s)	417, 447, 482, 641, 779
BseRI	GAGGAG	2 cut(s)	99, 188
BseXI	GCAGC	2 cut(s)	406, 409
Bsh1236I	CGCG	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	16
BsiSI	CCGG	2 cut(s)	156, 312
BslI	CCNNNNNNNGG	1 cut(s)	607
BsmAI	GTCTC	3 cut(s)	178, 336, 668
Bso31I	GGTCTC	2 cut(s)	178, 668
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	3 cut(s)	135, 256, 314
Bsp19I	CCATGG	1 cut(s)	51
BspACI	CCGC	5 cut(s)	27, 29, 32, 48, 213
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	3 cut(s)	316, 480, 814
BspPI	GGATC	3 cut(s)	130, 309, 322
BspTNI	GGTCTC	2 cut(s)	178, 668
BsrDI	GCAATG	1 cut(s)	521
BsrI	ACTGG	5 cut(s)	417, 447, 482, 641, 779
BssECI	CCNNGG	5 cut(s)	27, 51, 168, 273, 794
BssMI	GATC	3 cut(s)	135, 256, 314
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	3 cut(s)	170, 275, 795
Bst4CI	ACNGT	3 cut(s)	144, 556, 682
Bst6I	CTCTTC	2 cut(s)	486, 716
BstC8I	GCNNGC	5 cut(s)	39, 43, 270, 511, 649
BstDSI	CCRYGG	2 cut(s)	27, 51
BstF5I	GGATG	1 cut(s)	616
BstFNI	CGCG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	302
BstHHI	GCGC	4 cut(s)	47, 155, 301, 536
BstKTI	GATC	3 cut(s)	138, 259, 317
BstMAI	GTCTC	3 cut(s)	178, 336, 668
BstMBI	GATC	3 cut(s)	135, 256, 314
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 47, 53
BstNI	CCWGG	3 cut(s)	170, 275, 795
BstNSI	RCATGY	2 cut(s)	513, 757
BstSCI	CCNGG	3 cut(s)	168, 273, 793
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	406, 409
BstV2I	GAAGAC	2 cut(s)	95, 366
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
BtgI	CCRYGG	2 cut(s)	27, 51
BtrI	CACGTC	1 cut(s)	364
BtsCI	GGATG	1 cut(s)	616
BtsIMutI	CAGTG	3 cut(s)	410, 454, 786
Cac8I	GCNNGC	5 cut(s)	39, 43, 270, 511, 649
CfoI	GCGC	4 cut(s)	47, 155, 301, 536
Cfr13I	GGNCC	1 cut(s)	639
Cfr42I	CCGCGG	1 cut(s)	30
CviAII	CATG	6 cut(s)	52, 328, 510, 514, 652, 754
DpnI	GATC	3 cut(s)	137, 258, 316
DpnII	GATC	3 cut(s)	135, 256, 314
DrdI	GACNNNNNNGTC	1 cut(s)	328
DseDI	GACNNNNNNGTC	1 cut(s)	328
Eam1104I	CTCTTC	2 cut(s)	486, 716
EarI	CTCTTC	2 cut(s)	486, 716
Ecl136II	GAGCTC	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	16
Eco31I	GGTCTC	2 cut(s)	178, 668
Eco47I	GGWCC	1 cut(s)	639
Eco47III	AGCGCT	1 cut(s)	300
Eco53kI	GAGCTC	1 cut(s)	14
Eco57I	CTGAAG	1 cut(s)	565
EcoICRI	GAGCTC	1 cut(s)	14
EcoRII	CCWGG	3 cut(s)	168, 273, 793
EcoT14I	CCWWGG	1 cut(s)	51
EcoT22I	ATGCAT	3 cut(s)	459, 515, 703
EcoT38I	GRGCYC	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	6 cut(s)	55, 331, 513, 517, 655, 757
FatI	CATG	6 cut(s)	51, 327, 509, 513, 651, 753
FauI	CCCGC	1 cut(s)	34
FauNDI	CATATG	2 cut(s)	149, 697
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	4 cut(s)	30, 48, 420, 423
FokI	GGATG	1 cut(s)	623
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	4 cut(s)	30, 48, 420, 423
FspI	TGCGCA	1 cut(s)	535
GlaI	GCGC	4 cut(s)	46, 154, 300, 535
GluI	GCNGC	4 cut(s)	30, 48, 420, 423
GsuI	CTGGAG	3 cut(s)	434, 465, 650
HaeII	RGCGCY	1 cut(s)	302
HapII	CCGG	2 cut(s)	156, 312
HhaI	GCGC	4 cut(s)	47, 155, 301, 536
Hin1II	CATG	6 cut(s)	55, 331, 513, 517, 655, 757
Hin6I	GCGC	4 cut(s)	45, 153, 299, 534
HinP1I	GCGC	4 cut(s)	45, 153, 299, 534
HinfI	GANTC	3 cut(s)	73, 343, 540
HpaII	CCGG	2 cut(s)	156, 312
HphI	GGTGA	1 cut(s)	783
Hpy188I	TCNGA	2 cut(s)	140, 226
Hpy188III	TCNNGA	1 cut(s)	70
Hpy99I	CGWCG	4 cut(s)	71, 144, 182, 185
HpyAV	CCTTC	1 cut(s)	123
HpyCH4III	ACNGT	3 cut(s)	144, 556, 682
HpyCH4IV	ACGT	2 cut(s)	66, 363
HpyCH4V	TGCA	5 cut(s)	457, 513, 651, 701, 762
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 47, 53
HpySE526I	ACGT	2 cut(s)	66, 363
Hsp92II	CATG	6 cut(s)	55, 331, 513, 517, 655, 757
HspAI	GCGC	4 cut(s)	45, 153, 299, 534
Ksp22I	TGATCA	1 cut(s)	256
KspI	CCGCGG	1 cut(s)	30
Kzo9I	GATC	3 cut(s)	135, 256, 314
LmnI	GCTCC	5 cut(s)	11, 201, 484, 742, 812
Lsp1109I	GCAGC	2 cut(s)	406, 409
LweI	GCATC	2 cut(s)	230, 710
MaeII	ACGT	2 cut(s)	66, 363
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	3 cut(s)	137, 258, 316
MboI	GATC	3 cut(s)	135, 256, 314
MboII	GAAGA	8 cut(s)	89, 95, 108, 371, 435, 503, 571, 703
MflI	RGATCY	1 cut(s)	314
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	3 cut(s)	367, 438, 466
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	9 cut(s)	117, 120, 175, 209, 294, 348, 371, 409, 436
Mph1103I	ATGCAT	3 cut(s)	459, 515, 703
MseI	TTAA	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	2 cut(s)	156, 312
MspR9I	CCNGG	3 cut(s)	170, 275, 795
MvaI	CCWGG	3 cut(s)	170, 275, 795
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	3 cut(s)	38, 47, 53
NcoI	CCATGG	1 cut(s)	51
NdeI	CATATG	2 cut(s)	149, 697
NdeII	GATC	3 cut(s)	135, 256, 314
NlaIII	CATG	6 cut(s)	55, 331, 513, 517, 655, 757
NlaIV	GGNNCC	3 cut(s)	316, 480, 814
NsbI	TGCGCA	1 cut(s)	535
NsiI	ATGCAT	3 cut(s)	459, 515, 703
NspI	RCATGY	2 cut(s)	513, 757
PaeI	GCATGC	1 cut(s)	513
PciI	ACATGT	1 cut(s)	753
PfeI	GAWTC	3 cut(s)	73, 343, 540
PflMI	CCANNNNNTGG	1 cut(s)	607
PkrI	GCNGC	4 cut(s)	31, 49, 421, 424
PscI	ACATGT	1 cut(s)	753
Psp124BI	GAGCTC	1 cut(s)	16
Psp6I	CCWGG	3 cut(s)	168, 273, 793
PspGI	CCWGG	3 cut(s)	168, 273, 793
PspN4I	GGNNCC	3 cut(s)	316, 480, 814
PspPI	GGNCC	1 cut(s)	639
PsuI	RGATCY	1 cut(s)	314
SacI	GAGCTC	1 cut(s)	16
SacII	CCGCGG	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	4 cut(s)	30, 48, 420, 423
Sau3AI	GATC	3 cut(s)	135, 256, 314
Sau96I	GGNCC	1 cut(s)	639
ScrFI	CCNGG	3 cut(s)	170, 275, 795
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	6 cut(s)	16, 69, 238, 366, 664, 672
SfaNI	GCATC	2 cut(s)	230, 710
Sfr303I	CCGCGG	1 cut(s)	30
SgrBI	CCGCGG	1 cut(s)	30
SinI	GGWCC	1 cut(s)	639
SphI	GCATGC	1 cut(s)	513
Sse9I	AATT	3 cut(s)	367, 438, 466
SsiI	CCGC	5 cut(s)	27, 29, 32, 48, 213
SspI	AATATT	1 cut(s)	766
SstI	GAGCTC	1 cut(s)	16
StyD4I	CCNGG	3 cut(s)	168, 273, 793
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	3 cut(s)	144, 556, 682
TaiI	ACGT	2 cut(s)	69, 366
TasI	AATT	3 cut(s)	367, 438, 466
TauI	GCSGC	2 cut(s)	32, 50
TfiI	GAWTC	3 cut(s)	73, 343, 540
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	3 cut(s)	417, 454, 786
TseI	GCWGC	2 cut(s)	419, 422
TspDTI	ATGAA	5 cut(s)	48, 136, 316, 335, 703
TspGWI	ACGGA	4 cut(s)	24, 166, 265, 503
TspRI	CASTG	3 cut(s)	417, 454, 786
Van91I	CCANNNNNTGG	1 cut(s)	607
VpaK11BI	GGWCC	1 cut(s)	639
XceI	RCATGY	2 cut(s)	513, 757
Zsp2I	ATGCAT	3 cut(s)	459, 515, 703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.