Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005689

Physical Location & Seq

Genomic Coordinates Forward (+)

13889431 .. 13893316

Gene Structure 3886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G112900.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGAAGAAATTCCAAGCAGTCCCCTCCAAGCAGTCCGAAAATCAATGTCAATGATATACAACAGTGAGTGGAAGTCTCTCTCTCAACTCAAAATGGACGGCGGCGGCGTTTCGAAGGCAGTGGCGGTGGTGGCTTGCGCCGCCATGGCGTTGTTCTACGTTGCAATTCTCTATGCCCCGACTCTAATCCTTCGTCTTCCTCCTCCCCCTTCCTTCAAGAACTTCATGATCCGACGGTTCATATGCGCCGCTATTTCTTCCGTCGTCTCCGTTGTCGTCTCTGCTCTTCTCCTCCCTATGAAAAGCAGAGAGGCATCATCTCTGTTAGGTGTATACGGCATCCGAATGGACCATATTTGGCAAGCTGTGATCTTTCCTCTTACATTGACTGCTCTTATGTACGGTGGATCCTTGGTCCTCAAGTCTCTATTATTGATGAGTGCGTTGAGGGAACACATGAATTTTGGTGGAGGCCTTTCGTTCAACAATATCAAAAATTTATCCGAAGAGATTGTTGCCTGTTCGCGTTCAATAGCTTCGGATGTTTTGGTTTGGCGTACTTATGTTGTGGCCCCGCTTACTGAAGAGTTGGTGTTTAGAGCATGTATGTTACCTTTACTTCTCTGCGGAGGATTCCAAAAGTCCACAGTCATCTTTCTCTGCCCCATTTTCTTCAGCTTGGCACATTTAAACCATCTAAAGGACGTCTATAGCAAGCAAAACTACAACTTGACCAAAGCCGTCCTGGCTATAGGTCTCCAGCTTGGCTATACCGTTGTCTTTGGCTCCTATGCATCTTTTCTCTTCATTCAAACTGGACATTTTCTTGCTCCTTTAGTTGCTCACGCATTTTGCAATTTTATGGGACTGCCTGTGCTAGTTTCACGGGGAAAAGGGATAGTAAGTGTGGCATCTGTAGCTGGAATTGTGGGTTTCCTGTGGCTTCTTTTTCCAATGACTCACCCAGAGTTGTATAACGATAGAACAGATAATTGCGTATGTTGGCAAGGATATTGTTCTGGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Abi

Protein Analysis

343

Amino Acids

37.48

Weight (kDa)

9.07

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36305 AT2G36305
fragaria_vesca	FvH4_6g18450 FvH4_6g18450 FvH4_6g18450 FvH4_6g18450 FvH4_6g18450 FvH4_6g18450
malus_domestica	MD12G1023600.v1.1 MD14G1020800.v1.1
prunus_persica	Prupe.7G112900_v2.0.a1 Prupe.7G112900_v2.0.a1 Prupe.7G112900_v2.0.a1 Prupe.7G112900_v2.0.a1
pyrus_communis	pycom12g02200 pycom14g02030
rosa_chinensis	RchiOBHm_Chr3g0472981
rosa_laevigata	RLG00000024040
rosa_multiflora	Rmu_sc0002332.1_g000002 Rmu_sc0034753.1_g000001
rosa_roxburghii	Rroxscaffold_6G00408430
rosa_rugosa	Rorug03G0130300 Rorug03G0130400
rosa_samantha	Rh3AG182200 Rh3BG208500 Rh3CG205500 Rh3DG167500
rosa_wichuraiana	Rw3G016100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	708
AccI	GTMKAC	1 cut(s)	333
AccII	CGCG	1 cut(s)	526
AciI	CCGC	7 cut(s)	102, 105, 125, 141, 249, 575, 627
AclWI	GGATC	3 cut(s)	223, 402, 415
AcsI	RAATTY	3 cut(s)	9, 460, 496
AcuI	CTGAAG	2 cut(s)	603, 658
AcyI	GRCGYC	1 cut(s)	705
AfaI	GTAC	2 cut(s)	401, 559
AfiI	CCNNNNNNNGG	1 cut(s)	700
AgsI	TTSAA	4 cut(s)	217, 484, 531, 812
AjnI	CCWGG	1 cut(s)	744
AluBI	AGCT	5 cut(s)	365, 536, 678, 763, 920
AluI	AGCT	5 cut(s)	365, 536, 678, 763, 920
Alw26I	GTCTC	5 cut(s)	81, 271, 283, 429, 761
AlwI	GGATC	3 cut(s)	223, 402, 415
AoxI	GGCC	2 cut(s)	472, 570
ApoI	RAATTY	3 cut(s)	9, 460, 496
Asp700I	GAANNNNTTC	1 cut(s)	9
AspLEI	GCGC	2 cut(s)	140, 248
AspS9I	GGNCC	3 cut(s)	349, 415, 571
AsuHPI	GGTGA	1 cut(s)	953
AsuII	TTCGAA	1 cut(s)	113
AvaII	GGWCC	2 cut(s)	349, 415
BamHI	GGATCC	1 cut(s)	407
BbsI	GAAGAC	1 cut(s)	188
BccI	CCATC	1 cut(s)	702
BceAI	ACGGC	3 cut(s)	115, 352, 725
BciT130I	CCWGG	1 cut(s)	746
BcoDI	GTCTC	5 cut(s)	81, 271, 283, 429, 761
BfaI	CTAG	1 cut(s)	878
BfmI	CTRYAG	3 cut(s)	709, 750, 915
BglI	GCCNNNNNGGC	2 cut(s)	146, 746
BisI	GCNGC	4 cut(s)	103, 106, 141, 249
BlsI	GCNGC	4 cut(s)	104, 107, 142, 250
Bme1390I	CCNGG	1 cut(s)	746
Bme18I	GGWCC	2 cut(s)	349, 415
BmgT120I	GGNCC	3 cut(s)	349, 415, 571
BmiI	GGNNCC	3 cut(s)	409, 573, 787
BmrFI	CCNGG	1 cut(s)	746
BmsI	GCATC	4 cut(s)	323, 348, 803, 920
BpiI	GAAGAC	1 cut(s)	188
BpmI	CTGGAG	1 cut(s)	743
Bpu14I	TTCGAA	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	404
BsaHI	GRCGYC	1 cut(s)	705
BsaI	GGTCTC	1 cut(s)	761
BsaJI	CCNNGG	2 cut(s)	144, 411
Bsc4I	CCNNNNNNNGG	1 cut(s)	700
Bse1I	ACTGG	1 cut(s)	820
BseBI	CCWGG	1 cut(s)	746
BseDI	CCNNGG	2 cut(s)	144, 411
BseGI	GGATG	2 cut(s)	339, 547
BseLI	CCNNNNNNNGG	1 cut(s)	700
BseNI	ACTGG	1 cut(s)	820
BseRI	GAGGAG	2 cut(s)	192, 281
Bsh1236I	CGCG	1 cut(s)	526
BshFI	GGCC	2 cut(s)	474, 572
BslFI	GGGAC	2 cut(s)	6, 879
BslI	CCNNNNNNNGG	1 cut(s)	700
BsmAI	GTCTC	5 cut(s)	81, 271, 283, 429, 761
BsmBI	CGTCTC	2 cut(s)	271, 283
BsmFI	GGGAC	2 cut(s)	6, 879
BsnI	GGCC	2 cut(s)	474, 572
Bso31I	GGTCTC	1 cut(s)	761
Bsp119I	TTCGAA	1 cut(s)	113
Bsp143I	GATC	3 cut(s)	228, 369, 407
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	7 cut(s)	102, 105, 125, 141, 249, 575, 627
BspANI	GGCC	2 cut(s)	474, 572
BspFNI	CGCG	1 cut(s)	526
BspHI	TCATGA	1 cut(s)	225
BspLI	GGNNCC	3 cut(s)	409, 573, 787
BspPI	GGATC	3 cut(s)	223, 402, 415
BspQI	GCTCTTC	1 cut(s)	291
BspT104I	TTCGAA	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	761
BsrI	ACTGG	1 cut(s)	820
BssECI	CCNNGG	2 cut(s)	144, 411
BssMI	GATC	3 cut(s)	228, 369, 407
BssNAI	GTATAC	1 cut(s)	334
BssNI	GRCGYC	1 cut(s)	705
BssT1I	CCWWGG	2 cut(s)	144, 411
Bst1107I	GTATAC	1 cut(s)	334
Bst2UI	CCWGG	1 cut(s)	746
Bst4CI	ACNGT	5 cut(s)	65, 237, 404, 649, 775
Bst6I	CTCTTC	4 cut(s)	291, 501, 579, 809
BstACI	GRCGYC	1 cut(s)	705
BstBI	TTCGAA	1 cut(s)	113
BstC8I	GCNNGC	3 cut(s)	136, 363, 716
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	339, 547
BstFNI	CGCG	1 cut(s)	526
BstHHI	GCGC	2 cut(s)	140, 248
BstKTI	GATC	3 cut(s)	231, 372, 410
BstMAI	GTCTC	5 cut(s)	81, 271, 283, 429, 761
BstMBI	GATC	3 cut(s)	228, 369, 407
BstMWI	GCNNNNNNNGC	5 cut(s)	131, 140, 146, 746, 917
BstNI	CCWGG	1 cut(s)	746
BstNSI	RCATGY	1 cut(s)	606
BstSCI	CCNGG	1 cut(s)	744
BstSFI	CTRYAG	3 cut(s)	709, 750, 915
BstUI	CGCG	1 cut(s)	526
BstV2I	GAAGAC	1 cut(s)	188
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
BstZ17I	GTATAC	1 cut(s)	334
BsuRI	GGCC	2 cut(s)	474, 572
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	339, 547
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	2 cut(s)	70, 126
Cac8I	GCNNGC	3 cut(s)	136, 363, 716
CciI	TCATGA	1 cut(s)	225
CfoI	GCGC	2 cut(s)	140, 248
Cfr13I	GGNCC	3 cut(s)	349, 415, 571
Csp6I	GTAC	2 cut(s)	400, 558
CviAII	CATG	4 cut(s)	145, 226, 457, 603
CviQI	GTAC	2 cut(s)	400, 558
DpnI	GATC	3 cut(s)	230, 371, 409
DpnII	GATC	3 cut(s)	228, 369, 407
DraI	TTTAAA	1 cut(s)	690
Eam1104I	CTCTTC	4 cut(s)	291, 501, 579, 809
EarI	CTCTTC	4 cut(s)	291, 501, 579, 809
Eco130I	CCWWGG	2 cut(s)	144, 411
Eco147I	AGGCCT	1 cut(s)	474
Eco31I	GGTCTC	1 cut(s)	761
Eco47I	GGWCC	2 cut(s)	349, 415
Eco57I	CTGAAG	2 cut(s)	603, 658
EcoRII	CCWGG	1 cut(s)	744
EcoT14I	CCWWGG	2 cut(s)	144, 411
EcoT22I	ATGCAT	1 cut(s)	796
ErhI	CCWWGG	2 cut(s)	144, 411
Esp3I	CGTCTC	2 cut(s)	271, 283
FaeI	CATG	4 cut(s)	148, 229, 460, 606
FaqI	GGGAC	2 cut(s)	6, 879
FatI	CATG	4 cut(s)	144, 225, 456, 602
FauI	CCCGC	1 cut(s)	582
FauNDI	CATATG	1 cut(s)	242
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	4 cut(s)	103, 106, 141, 249
FokI	GGATG	2 cut(s)	326, 554
Fsp4HI	GCNGC	4 cut(s)	103, 106, 141, 249
FspBI	CTAG	1 cut(s)	878
GlaI	GCGC	2 cut(s)	139, 247
GluI	GCNGC	4 cut(s)	103, 106, 141, 249
GsuI	CTGGAG	1 cut(s)	743
HaeIII	GGCC	2 cut(s)	474, 572
HhaI	GCGC	2 cut(s)	140, 248
Hin1I	GRCGYC	1 cut(s)	705
Hin1II	CATG	4 cut(s)	148, 229, 460, 606
Hin6I	GCGC	2 cut(s)	138, 246
HinP1I	GCGC	2 cut(s)	138, 246
HinfI	GANTC	3 cut(s)	181, 633, 958
HphI	GGTGA	1 cut(s)	953
Hpy166II	GTNNAC	2 cut(s)	334, 645
Hpy188I	TCNGA	5 cut(s)	38, 233, 344, 505, 541
Hpy188III	TCNNGA	2 cut(s)	217, 226
Hpy8I	GTNNAC	2 cut(s)	334, 645
Hpy99I	CGWCG	2 cut(s)	237, 266
HpyAV	CCTTC	4 cut(s)	109, 200, 219, 223
HpyCH4III	ACNGT	5 cut(s)	65, 237, 404, 649, 775
HpyCH4IV	ACGT	2 cut(s)	159, 705
HpyCH4V	TGCA	3 cut(s)	164, 794, 855
HpyF10VI	GCNNNNNNNGC	5 cut(s)	131, 140, 146, 746, 917
HpySE526I	ACGT	2 cut(s)	159, 705
Hsp92I	GRCGYC	1 cut(s)	705
Hsp92II	CATG	4 cut(s)	148, 229, 460, 606
HspAI	GCGC	2 cut(s)	138, 246
Kzo9I	GATC	3 cut(s)	228, 369, 407
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	2 cut(s)	791, 835
LweI	GCATC	4 cut(s)	323, 348, 803, 920
MaeI	CTAG	1 cut(s)	878
MaeII	ACGT	2 cut(s)	159, 705
MaeIII	GTNAC	1 cut(s)	609
MalI	GATC	3 cut(s)	230, 371, 409
MboI	GATC	3 cut(s)	228, 369, 407
MboII	GAAGA	8 cut(s)	17, 188, 249, 278, 518, 596, 664, 796
MflI	RGATCY	1 cut(s)	407
MluCI	AATT	7 cut(s)	9, 165, 460, 496, 856, 924, 991
MlyI	GAGTC	2 cut(s)	175, 952
MmeI	TCCRAC	1 cut(s)	256
Mph1103I	ATGCAT	1 cut(s)	796
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	1 cut(s)	689
MslI	CAYNNNNRTG	1 cut(s)	344
MspR9I	CCNGG	1 cut(s)	746
MvaI	CCWGG	1 cut(s)	746
MvnI	CGCG	1 cut(s)	526
MwoI	GCNNNNNNNGC	5 cut(s)	131, 140, 146, 746, 917
NcoI	CCATGG	1 cut(s)	144
NdeI	CATATG	1 cut(s)	242
NdeII	GATC	3 cut(s)	228, 369, 407
NlaIII	CATG	4 cut(s)	148, 229, 460, 606
NlaIV	GGNNCC	3 cut(s)	409, 573, 787
NsiI	ATGCAT	1 cut(s)	796
NspI	RCATGY	1 cut(s)	606
NspV	TTCGAA	1 cut(s)	113
PagI	TCATGA	1 cut(s)	225
PceI	AGGCCT	1 cut(s)	474
PciSI	GCTCTTC	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	633
PkrI	GCNGC	4 cut(s)	104, 107, 142, 250
PleI	GAGTC	2 cut(s)	175, 952
PpsI	GAGTC	2 cut(s)	175, 952
Psp6I	CCWGG	1 cut(s)	744
PspGI	CCWGG	1 cut(s)	744
PspN4I	GGNNCC	3 cut(s)	409, 573, 787
PspPI	GGNCC	3 cut(s)	349, 415, 571
PsuI	RGATCY	1 cut(s)	407
RsaI	GTAC	2 cut(s)	401, 559
RsaNI	GTAC	2 cut(s)	400, 558
RseI	CAYNNNNRTG	1 cut(s)	344
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	689
SatI	GCNGC	4 cut(s)	103, 106, 141, 249
Sau3AI	GATC	3 cut(s)	228, 369, 407
Sau96I	GGNCC	3 cut(s)	349, 415, 571
SchI	GAGTC	2 cut(s)	175, 952
ScrFI	CCNGG	1 cut(s)	746
SfaNI	GCATC	4 cut(s)	323, 348, 803, 920
SfcI	CTRYAG	3 cut(s)	709, 750, 915
SfuI	TTCGAA	1 cut(s)	113
SinI	GGWCC	2 cut(s)	349, 415
SmiMI	CAYNNNNRTG	1 cut(s)	344
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	7 cut(s)	9, 165, 460, 496, 856, 924, 991
SseBI	AGGCCT	1 cut(s)	474
SsiI	CCGC	7 cut(s)	102, 105, 125, 141, 249, 575, 627
SspMI	CTAG	1 cut(s)	878
StuI	AGGCCT	1 cut(s)	474
StyD4I	CCNGG	1 cut(s)	744
StyI	CCWWGG	2 cut(s)	144, 411
TaaI	ACNGT	5 cut(s)	65, 237, 404, 649, 775
TaiI	ACGT	2 cut(s)	162, 708
TaqI	TCGA	1 cut(s)	113
TasI	AATT	7 cut(s)	9, 165, 460, 496, 856, 924, 991
TauI	GCSGC	4 cut(s)	105, 108, 143, 251
TfiI	GAWTC	1 cut(s)	633
Tru1I	TTAA	1 cut(s)	689
Tru9I	TTAA	1 cut(s)	689
TscAI	CASTG	2 cut(s)	70, 126
TspDTI	ATGAA	5 cut(s)	214, 229, 314, 473, 796
TspGWI	ACGGA	2 cut(s)	250, 259
TspRI	CASTG	2 cut(s)	70, 126
VpaK11BI	GGWCC	2 cut(s)	349, 415
XapI	RAATTY	3 cut(s)	9, 460, 496
XceI	RCATGY	1 cut(s)	606
XcmI	CCANNNNNNNNNTGG	1 cut(s)	742
XmiI	GTMKAC	1 cut(s)	333
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	1 cut(s)	878
ZraI	GACGTC	1 cut(s)	706
Zsp2I	ATGCAT	1 cut(s)	796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.