Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034753.1

Orthogroup ID

OG0005689

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1197

Gene Structure 1196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034753.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 563 bp

atggaggacggagctctttcaaaaccagcggcggtgctggcttgcgccgccatggcttcattctacgtcgggattctctacgcccccactttacttcttcgtcttcctcctccttcttcccacaataactttttgatccgacggttcatatgcgccggagtttcctccctcgtctccgtcgtcgtctctgctctgctcctccccattaaaagcggagaagcatcggatttgttaggtgtatatggcatacggactgatcatatttggcaagccctggtctttcctctatcattgacagcgcttatgtacgccggatccttgacattcatgtctctatcattgattcattcgttgagggaagacgtgaattgtagtggagggctttcgtttgactatatcaaaagtatctcactggaggctgctgcctctttgcgttcaatttcttccagtgttatgcattggcgtaattatgttgtggctccggttacagaagagttggtgtttagagcatgcatgataccattgcttctctgcgcaggattccaaaaaaacacagtcatatt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Abi

Protein Analysis

187

Amino Acids

20.13

Weight (kDa)

7.66

Isoelectric Point (pI)

57.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36305 AT2G36305
fragaria_vesca	FvH4_6g18450 FvH4_6g18450 FvH4_6g18450 FvH4_6g18450 FvH4_6g18450 FvH4_6g18450
malus_domestica	MD12G1023600.v1.1 MD14G1020800.v1.1
prunus_persica	Prupe.7G112900_v2.0.a1 Prupe.7G112900_v2.0.a1 Prupe.7G112900_v2.0.a1 Prupe.7G112900_v2.0.a1
pyrus_communis	pycom12g02200 pycom14g02030
rosa_chinensis	RchiOBHm_Chr3g0472981
rosa_laevigata	RLG00000024040
rosa_multiflora	Rmu_sc0002332.1_g000002 Rmu_sc0034753.1_g000001
rosa_roxburghii	Rroxscaffold_6G00408430
rosa_rugosa	Rorug03G0130300 Rorug03G0130400
rosa_samantha	Rh3AG182200 Rh3BG208500 Rh3CG205500 Rh3DG167500
rosa_wichuraiana	Rw3G016100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	328
Acc16I	TGCGCA	1 cut(s)	535
AciI	CCGC	4 cut(s)	29, 32, 48, 213
AclWI	GGATC	3 cut(s)	130, 309, 322
AfaI	GTAC	1 cut(s)	308
AfeI	AGCGCT	1 cut(s)	300
AgsI	TTSAA	2 cut(s)	21, 438
AjiI	CACGTC	1 cut(s)	364
AjnI	CCWGG	1 cut(s)	273
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	3 cut(s)	178, 190, 336
AlwI	GGATC	3 cut(s)	130, 309, 322
Aor51HI	AGCGCT	1 cut(s)	300
ApeKI	GCWGC	2 cut(s)	419, 422
AspLEI	GCGC	4 cut(s)	47, 155, 301, 536
BamHI	GGATCC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	16
BbsI	GAAGAC	2 cut(s)	95, 366
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	2 cut(s)	406, 409
BciT130I	CCWGG	1 cut(s)	275
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	3 cut(s)	178, 190, 336
BfoI	RGCGCY	1 cut(s)	302
BglI	GCCNNNNNGGC	1 cut(s)	53
BisI	GCNGC	4 cut(s)	30, 48, 420, 423
BlsI	GCNGC	4 cut(s)	31, 49, 421, 424
Bme1390I	CCNGG	1 cut(s)	275
BmgBI	CACGTC	1 cut(s)	364
BmiI	GGNNCC	2 cut(s)	316, 480
BmrFI	CCNGG	1 cut(s)	275
BmsI	GCATC	1 cut(s)	230
BpiI	GAAGAC	2 cut(s)	95, 366
BpmI	CTGGAG	1 cut(s)	434
BsaJI	CCNNGG	2 cut(s)	51, 273
BsaWI	WCCGGW	1 cut(s)	481
Bse1I	ACTGG	2 cut(s)	417, 447
Bse3DI	GCAATG	1 cut(s)	521
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	2 cut(s)	51, 273
BseMI	GCAATG	1 cut(s)	521
BseNI	ACTGG	2 cut(s)	417, 447
BseRI	GAGGAG	2 cut(s)	99, 188
BseXI	GCAGC	2 cut(s)	406, 409
BsiHKAI	GWGCWC	1 cut(s)	16
BsiSI	CCGG	3 cut(s)	156, 312, 482
BsmAI	GTCTC	3 cut(s)	178, 190, 336
BsmBI	CGTCTC	2 cut(s)	178, 190
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	3 cut(s)	135, 256, 314
Bsp19I	CCATGG	1 cut(s)	51
BspACI	CCGC	4 cut(s)	29, 32, 48, 213
BspLI	GGNNCC	2 cut(s)	316, 480
BspPI	GGATC	3 cut(s)	130, 309, 322
BsrDI	GCAATG	1 cut(s)	521
BsrI	ACTGG	2 cut(s)	417, 447
BssECI	CCNNGG	2 cut(s)	51, 273
BssMI	GATC	3 cut(s)	135, 256, 314
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	2 cut(s)	144, 556
Bst6I	CTCTTC	1 cut(s)	486
BstC8I	GCNNGC	4 cut(s)	39, 43, 270, 511
BstDSI	CCRYGG	1 cut(s)	51
BstH2I	RGCGCY	1 cut(s)	302
BstHHI	GCGC	4 cut(s)	47, 155, 301, 536
BstKTI	GATC	3 cut(s)	138, 259, 317
BstMAI	GTCTC	3 cut(s)	178, 190, 336
BstMBI	GATC	3 cut(s)	135, 256, 314
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 47, 53
BstNI	CCWGG	1 cut(s)	275
BstNSI	RCATGY	1 cut(s)	513
BstSCI	CCNGG	1 cut(s)	273
BstV1I	GCAGC	2 cut(s)	406, 409
BstV2I	GAAGAC	2 cut(s)	95, 366
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
BtgI	CCRYGG	1 cut(s)	51
BtrI	CACGTC	1 cut(s)	364
BtsIMutI	CAGTG	2 cut(s)	410, 454
Cac8I	GCNNGC	4 cut(s)	39, 43, 270, 511
CfoI	GCGC	4 cut(s)	47, 155, 301, 536
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	4 cut(s)	52, 328, 510, 514
CviJI	RGCY	7 cut(s)	14, 41, 56, 272, 382, 419, 479
CviKI_1	RGCY	7 cut(s)	14, 41, 56, 272, 382, 419, 479
CviQI	GTAC	1 cut(s)	307
DpnI	GATC	3 cut(s)	137, 258, 316
DpnII	GATC	3 cut(s)	135, 256, 314
DrdI	GACNNNNNNGTC	1 cut(s)	328
DseDI	GACNNNNNNGTC	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
Ecl136II	GAGCTC	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	16
Eco47III	AGCGCT	1 cut(s)	300
Eco53kI	GAGCTC	1 cut(s)	14
EcoICRI	GAGCTC	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	273
EcoT14I	CCWWGG	1 cut(s)	51
EcoT22I	ATGCAT	2 cut(s)	459, 515
EcoT38I	GRGCYC	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	51
Esp3I	CGTCTC	2 cut(s)	178, 190
FaeI	CATG	4 cut(s)	55, 331, 513, 517
FatI	CATG	4 cut(s)	51, 327, 509, 513
FauNDI	CATATG	1 cut(s)	149
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	4 cut(s)	30, 48, 420, 423
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	4 cut(s)	30, 48, 420, 423
FspI	TGCGCA	1 cut(s)	535
GlaI	GCGC	4 cut(s)	46, 154, 300, 535
GluI	GCNGC	4 cut(s)	30, 48, 420, 423
GsuI	CTGGAG	1 cut(s)	434
HaeII	RGCGCY	1 cut(s)	302
HapII	CCGG	3 cut(s)	156, 312, 482
HhaI	GCGC	4 cut(s)	47, 155, 301, 536
Hin1II	CATG	4 cut(s)	55, 331, 513, 517
Hin6I	GCGC	4 cut(s)	45, 153, 299, 534
HinP1I	GCGC	4 cut(s)	45, 153, 299, 534
HinfI	GANTC	3 cut(s)	73, 343, 540
HpaII	CCGG	3 cut(s)	156, 312, 482
Hpy188I	TCNGA	2 cut(s)	140, 226
Hpy188III	TCNNGA	1 cut(s)	70
Hpy99I	CGWCG	4 cut(s)	71, 144, 182, 185
HpyAV	CCTTC	1 cut(s)	123
HpyCH4III	ACNGT	2 cut(s)	144, 556
HpyCH4IV	ACGT	2 cut(s)	66, 363
HpyCH4V	TGCA	2 cut(s)	457, 513
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 47, 53
HpySE526I	ACGT	2 cut(s)	66, 363
Hsp92II	CATG	4 cut(s)	55, 331, 513, 517
HspAI	GCGC	4 cut(s)	45, 153, 299, 534
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	135, 256, 314
LmnI	GCTCC	3 cut(s)	11, 201, 484
Lsp1109I	GCAGC	2 cut(s)	406, 409
LweI	GCATC	1 cut(s)	230
MaeII	ACGT	2 cut(s)	66, 363
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	3 cut(s)	137, 258, 316
MboI	GATC	3 cut(s)	135, 256, 314
MboII	GAAGA	6 cut(s)	89, 95, 108, 371, 435, 503
MflI	RGATCY	1 cut(s)	314
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	3 cut(s)	367, 438, 466
MmeI	TCCRAC	1 cut(s)	163
Mph1103I	ATGCAT	2 cut(s)	459, 515
MseI	TTAA	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	3 cut(s)	156, 312, 482
MspR9I	CCNGG	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	275
MwoI	GCNNNNNNNGC	3 cut(s)	38, 47, 53
NcoI	CCATGG	1 cut(s)	51
NdeI	CATATG	1 cut(s)	149
NdeII	GATC	3 cut(s)	135, 256, 314
NlaIII	CATG	4 cut(s)	55, 331, 513, 517
NlaIV	GGNNCC	2 cut(s)	316, 480
NsbI	TGCGCA	1 cut(s)	535
NsiI	ATGCAT	2 cut(s)	459, 515
NspI	RCATGY	1 cut(s)	513
PaeI	GCATGC	1 cut(s)	513
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PfeI	GAWTC	3 cut(s)	73, 343, 540
PkrI	GCNGC	4 cut(s)	31, 49, 421, 424
Psp124BI	GAGCTC	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	2 cut(s)	316, 480
PsuI	RGATCY	1 cut(s)	314
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
SacI	GAGCTC	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	4 cut(s)	30, 48, 420, 423
Sau3AI	GATC	3 cut(s)	135, 256, 314
ScrFI	CCNGG	1 cut(s)	275
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	4 cut(s)	16, 69, 238, 366
SfaNI	GCATC	1 cut(s)	230
SphI	GCATGC	1 cut(s)	513
Sse9I	AATT	3 cut(s)	367, 438, 466
SsiI	CCGC	4 cut(s)	29, 32, 48, 213
SstI	GAGCTC	1 cut(s)	16
StyD4I	CCNGG	1 cut(s)	273
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	144, 556
TaiI	ACGT	2 cut(s)	69, 366
TasI	AATT	3 cut(s)	367, 438, 466
TauI	GCSGC	2 cut(s)	32, 50
TfiI	GAWTC	3 cut(s)	73, 343, 540
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	2 cut(s)	417, 454
TseI	GCWGC	2 cut(s)	419, 422
TspDTI	ATGAA	4 cut(s)	48, 136, 316, 335
TspGWI	ACGGA	3 cut(s)	24, 166, 265
TspRI	CASTG	2 cut(s)	417, 454
XceI	RCATGY	1 cut(s)	513
Zsp2I	ATGCAT	2 cut(s)	459, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.