Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009889

Physical Location & Seq

Genomic Coordinates Reverse (-)

15224497 .. 15227276

Gene Structure 2780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G36310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGATTGTGGTATGGAGAATTGTAATGGTGGGATCTCAAACGGTGACGTTTTGGGTAAGCATGAGAAGCTCATTATCGATACAGACCCAGGAATTGATGATAGCATGGCGATATTGATGGCGTTTCAAACACCGGAGCTGGAGATATTAGGATTAACTACTGTGTTTGGTAATGTTTCTACACAAGATGCTACTCGCAACGCTTTACTCTTGTGTGAGATTGCTGGCTTCCCTGATGTTCCCGTTGCAGAAGGAAGTTCCGAACCTTTAAAGGGTGGAATTCCGCGTGTTGCTGATTTTGTGCATGGTAAAAACGGACTAGGAGATGTCTCTCTTCCTCCTCCGAGTAGAAAGAAATCTGAGAAAAGTGCAGCTGAGTTTCTAGATGAGAAGGTCGAAGAATATCCGGGTGAAGTCACCATTCTCGCCCTCGGACCTCTAACCAACCTGGCATTAGCCATCAAACGCGATAGTTCATTTGCGAGCAAGGTGAAGAAAATTGTTATTCTTGGTGGAGCTTTCTTTTCTTTGGGAAATGTCAATCCTGCAGCTGAGGCTAATATATATGGTGACCCGGAAGCAGCTGATGTTGTTTTCACATCTGGAGCGGATATCACTGTTGTCGGTATAAACATCACAACCCAACTTAAACTATCAGATGATGACCTCTTGGAGCTTGGTAACTGCAAGGGGAAACACTCTAAATTGATAAGCGATATGTGCAAATTTTATAGAGATTGGCACGTCAAATCTGATGGTGTTTACGGAGTGTACCTCCATGACCCAGTCAGCTTTGTGGCTGTAGTACGGCCTGATTTATTCACATATAAGAAAGGCGTTGTTCGGGTGGAGACTCAAGGGATATGTGTTGGCCACACGCTCATGGATCAAGGCCTCAAGAGATGGAACGGAAGCAATCCGTGGGTGGGATATTCACCGATATCAGTTGCTTGGACGGTTGACGTAGAAGGAGTTTTGGAATATGTCAAAGCAAAGCTGATGAAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006152 GO:0006213 GO:0006218 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008477 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019439 GO:0034641 GO:0034655 GO:0034656 GO:0042278 GO:0042454 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0045437 GO:0046108 GO:0046131 GO:0046133 GO:0046135 GO:0046483 GO:0046700 GO:0047622 GO:0047724 GO:0050263 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:0072527 GO:0072529 GO:0072585 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00760 map00240 map00760

Pfam Domains

Protein Families

IU_nuc_hydro

Protein Analysis

336

Amino Acids

36.09

Weight (kDa)

5.01

Isoelectric Point (pI)

20.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IU_nuc_hydro	PF01156	24 - 326	4.5e-93	Inosine-uridine preferring nucleoside hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36310
fragaria_vesca	FvH4_6g18360 FvH4_6g18360 FvH4_6g18360
malus_domestica	MD12G1022900.v1.1 MD14G1019900.v1.1
prunus_persica	Prupe.7G113700_v2.0.a1 Prupe.7G113700_v2.0.a1 Prupe.7G113700_v2.0.a1 Prupe.7G113700_v2.0.a1
pyrus_communis	pycom12g02140 pycom14g01950
rosa_chinensis	RchiOBHm_Chr3g0472851
rosa_laevigata	RLG00000024051
rosa_roxburghii	Rroxscaffold_6G00408560
rosa_rugosa	Rorug03G0128100
rosa_samantha	Rh3AG180800 Rh3BG207000 Rh3CG204200 Rh3DG168900
rosa_wichuraiana	Rw3G016220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	608
AccII	CGCG	2 cut(s)	286, 468
AciI	CCGC	2 cut(s)	284, 608
AclWI	GGATC	2 cut(s)	41, 894
AcoI	YGGCCR	1 cut(s)	871
AcsI	RAATTY	2 cut(s)	279, 725
AfaI	GTAC	2 cut(s)	773, 807
AfiI	CCNNNNNNNGG	2 cut(s)	272, 926
AgsI	TTSAA	1 cut(s)	128
AjiI	CACGTC	1 cut(s)	745
AjnI	CCWGG	2 cut(s)	88, 447
AluBI	AGCT	9 cut(s)	70, 139, 374, 518, 551, 584, 676, 792, 997
AluI	AGCT	9 cut(s)	70, 139, 374, 518, 551, 584, 676, 792, 997
Alw26I	GTCTC	2 cut(s)	334, 845
AlwI	GGATC	2 cut(s)	41, 894
AoxI	GGCC	3 cut(s)	809, 871, 892
ApeKI	GCWGC	3 cut(s)	371, 548, 581
ApoI	RAATTY	2 cut(s)	279, 725
AspS9I	GGNCC	1 cut(s)	434
AsuC2I	CCSGG	2 cut(s)	408, 575
AsuHPI	GGTGA	6 cut(s)	56, 409, 422, 502, 581, 927
AvaII	GGWCC	1 cut(s)	434
BalI	TGGCCA	1 cut(s)	873
BbvCI	CCTCAGC	1 cut(s)	552
BbvI	GCAGC	3 cut(s)	383, 560, 593
BccI	CCATC	4 cut(s)	112, 467, 749, 897
BceAI	ACGGC	1 cut(s)	824
BciT130I	CCWGG	2 cut(s)	90, 449
BcnI	CCSGG	2 cut(s)	408, 575
BcoDI	GTCTC	2 cut(s)	334, 845
BfaI	CTAG	2 cut(s)	320, 383
BfmI	CTRYAG	2 cut(s)	546, 801
BisI	GCNGC	3 cut(s)	372, 549, 582
BlsI	GCNGC	3 cut(s)	373, 550, 583
Bme1390I	CCNGG	4 cut(s)	90, 408, 449, 575
Bme18I	GGWCC	1 cut(s)	434
BmgBI	CACGTC	1 cut(s)	745
BmgT120I	GGNCC	1 cut(s)	434
BmrFI	CCNGG	4 cut(s)	90, 408, 449, 575
BmrI	ACTGGG	1 cut(s)	779
BmsI	GCATC	1 cut(s)	178
BmuI	ACTGGG	1 cut(s)	779
BplI	GAGNNNNNCTC	2 cut(s)	759, 791
BpmI	CTGGAG	2 cut(s)	161, 624
Bpu10I	CCTNAGC	1 cut(s)	552
BpuEI	CTTGAG	2 cut(s)	840, 881
BpuMI	CCSGG	2 cut(s)	408, 575
Bsa29I	ATCGAT	1 cut(s)	78
BsaJI	CCNNGG	3 cut(s)	88, 430, 920
BsaWI	WCCGGW	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 926
Bse1I	ACTGG	1 cut(s)	785
BseBI	CCWGG	2 cut(s)	90, 449
BseCI	ATCGAT	1 cut(s)	78
BseDI	CCNNGG	3 cut(s)	88, 430, 920
BseLI	CCNNNNNNNGG	2 cut(s)	272, 926
BseMII	CTCAG	3 cut(s)	351, 366, 543
BseNI	ACTGG	1 cut(s)	785
BseRI	GAGGAG	1 cut(s)	330
BseXI	GCAGC	3 cut(s)	383, 560, 593
BsgI	GTGCAG	1 cut(s)	390
Bsh1236I	CGCG	2 cut(s)	286, 468
BshFI	GGCC	3 cut(s)	811, 873, 894
BshVI	ATCGAT	1 cut(s)	78
BsiSI	CCGG	3 cut(s)	134, 407, 575
BslI	CCNNNNNNNGG	2 cut(s)	272, 926
BsmAI	GTCTC	2 cut(s)	334, 845
BsnI	GGCC	3 cut(s)	811, 873, 894
Bsp143I	GATC	2 cut(s)	33, 886
BspACI	CCGC	2 cut(s)	284, 608
BspANI	GGCC	3 cut(s)	811, 873, 894
BspCNI	CTCAG	3 cut(s)	352, 367, 544
BspDI	ATCGAT	1 cut(s)	78
BspFNI	CGCG	2 cut(s)	286, 468
BspMAI	CTGCAG	1 cut(s)	550
BspPI	GGATC	2 cut(s)	41, 894
BsrBI	CCGCTC	1 cut(s)	608
BsrI	ACTGG	1 cut(s)	785
BssECI	CCNNGG	3 cut(s)	88, 430, 920
BssMI	GATC	2 cut(s)	33, 886
Bst2UI	CCWGG	2 cut(s)	90, 449
Bst4CI	ACNGT	4 cut(s)	44, 163, 619, 958
Bst6I	CTCTTC	1 cut(s)	339
BstC8I	GCNNGC	2 cut(s)	226, 484
BstDEI	CTNAG	3 cut(s)	360, 375, 552
BstDSI	CCRYGG	1 cut(s)	920
BstEII	GGTNACC	1 cut(s)	569
BstFNI	CGCG	2 cut(s)	286, 468
BstKTI	GATC	2 cut(s)	36, 889
BstMAI	GTCTC	2 cut(s)	334, 845
BstMBI	GATC	2 cut(s)	33, 886
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 554, 720, 1003
BstNI	CCWGG	2 cut(s)	90, 449
BstPI	GGTNACC	1 cut(s)	569
BstSCI	CCNGG	4 cut(s)	88, 406, 447, 573
BstSFI	CTRYAG	2 cut(s)	546, 801
BstUI	CGCG	2 cut(s)	286, 468
BstV1I	GCAGC	3 cut(s)	383, 560, 593
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
Bsu15I	ATCGAT	1 cut(s)	78
BsuRI	GGCC	3 cut(s)	811, 873, 894
BsuTUI	ATCGAT	1 cut(s)	78
BtgI	CCRYGG	1 cut(s)	920
BtrI	CACGTC	1 cut(s)	745
BtsIMutI	CAGTG	1 cut(s)	615
Cac8I	GCNNGC	2 cut(s)	226, 484
Cfr13I	GGNCC	1 cut(s)	434
ClaI	ATCGAT	1 cut(s)	78
Csp6I	GTAC	2 cut(s)	772, 806
CviAII	CATG	5 cut(s)	62, 106, 305, 779, 883
CviQI	GTAC	2 cut(s)	772, 806
DdeI	CTNAG	3 cut(s)	360, 375, 552
DpnI	GATC	2 cut(s)	35, 888
DpnII	GATC	2 cut(s)	33, 886
DraI	TTTAAA	1 cut(s)	270
EaeI	YGGCCR	1 cut(s)	871
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco147I	AGGCCT	1 cut(s)	894
Eco32I	GATATC	2 cut(s)	613, 942
Eco47I	GGWCC	1 cut(s)	434
Eco91I	GGTNACC	1 cut(s)	569
EcoO65I	GGTNACC	1 cut(s)	569
EcoRI	GAATTC	1 cut(s)	279
EcoRII	CCWGG	2 cut(s)	88, 447
EcoRV	GATATC	2 cut(s)	613, 942
FaeI	CATG	5 cut(s)	65, 109, 308, 782, 886
FatI	CATG	5 cut(s)	61, 105, 304, 778, 882
Fnu4HI	GCNGC	3 cut(s)	372, 549, 582
Fsp4HI	GCNGC	3 cut(s)	372, 549, 582
FspBI	CTAG	2 cut(s)	320, 383
GluI	GCNGC	3 cut(s)	372, 549, 582
GsuI	CTGGAG	2 cut(s)	161, 624
HaeIII	GGCC	3 cut(s)	811, 873, 894
HapII	CCGG	3 cut(s)	134, 407, 575
Hin1II	CATG	5 cut(s)	65, 109, 308, 782, 886
HincII	GTYRAC	1 cut(s)	961
HindII	GTYRAC	1 cut(s)	961
HinfI	GANTC	1 cut(s)	853
HpaII	CCGG	3 cut(s)	134, 407, 575
HphI	GGTGA	6 cut(s)	56, 409, 422, 502, 581, 927
Hpy166II	GTNNAC	3 cut(s)	763, 772, 961
Hpy188I	TCNGA	6 cut(s)	262, 345, 361, 434, 658, 754
Hpy188III	TCNNGA	3 cut(s)	383, 603, 898
Hpy8I	GTNNAC	3 cut(s)	763, 772, 961
HpyAV	CCTTC	3 cut(s)	245, 385, 962
HpyCH4III	ACNGT	4 cut(s)	44, 163, 619, 958
HpyCH4IV	ACGT	3 cut(s)	48, 744, 963
HpyCH4V	TGCA	6 cut(s)	248, 304, 371, 548, 687, 723
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 554, 720, 1003
HpyF3I	CTNAG	3 cut(s)	360, 375, 552
HpySE526I	ACGT	3 cut(s)	48, 744, 963
Hsp92II	CATG	5 cut(s)	65, 109, 308, 782, 886
Kzo9I	GATC	2 cut(s)	33, 886
LmnI	GCTCC	4 cut(s)	136, 515, 605, 673
Lsp1109I	GCAGC	3 cut(s)	383, 560, 593
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	2 cut(s)	320, 383
MaeII	ACGT	3 cut(s)	48, 744, 963
MaeIII	GTNAC	4 cut(s)	44, 415, 569, 680
MalI	GATC	2 cut(s)	35, 888
MbiI	CCGCTC	1 cut(s)	608
MboI	GATC	2 cut(s)	33, 886
MboII	GAAGA	3 cut(s)	326, 410, 505
MflI	RGATCY	1 cut(s)	33
MlsI	TGGCCA	1 cut(s)	873
MluCI	AATT	6 cut(s)	19, 93, 279, 498, 704, 725
MluNI	TGGCCA	1 cut(s)	873
MlyI	GAGTC	1 cut(s)	847
MnlI	CCTC	8 cut(s)	348, 351, 440, 447, 547, 677, 785, 905
Mox20I	TGGCCA	1 cut(s)	873
MscI	TGGCCA	1 cut(s)	873
MseI	TTAA	3 cut(s)	155, 269, 648
MslI	CAYNNNNRTG	1 cut(s)	881
Msp20I	TGGCCA	1 cut(s)	873
MspA1I	CMGCKG	3 cut(s)	374, 551, 584
MspI	CCGG	3 cut(s)	134, 407, 575
MspR9I	CCNGG	4 cut(s)	90, 408, 449, 575
MvaI	CCWGG	2 cut(s)	90, 449
MvnI	CGCG	2 cut(s)	286, 468
MwoI	GCNNNNNNNGC	4 cut(s)	67, 554, 720, 1003
NciI	CCSGG	2 cut(s)	408, 575
NdeII	GATC	2 cut(s)	33, 886
NlaIII	CATG	5 cut(s)	65, 109, 308, 782, 886
NmuCI	GTSAC	3 cut(s)	44, 415, 569
PceI	AGGCCT	1 cut(s)	894
PflFI	GACNNNGTC	1 cut(s)	785
PkrI	GCNGC	3 cut(s)	373, 550, 583
PleI	GAGTC	1 cut(s)	847
PpsI	GAGTC	1 cut(s)	847
Psp6I	CCWGG	2 cut(s)	88, 447
PspEI	GGTNACC	1 cut(s)	569
PspGI	CCWGG	2 cut(s)	88, 447
PspPI	GGNCC	1 cut(s)	434
PstI	CTGCAG	1 cut(s)	550
PsuI	RGATCY	1 cut(s)	33
PsyI	GACNNNGTC	1 cut(s)	785
PvuII	CAGCTG	3 cut(s)	374, 551, 584
RsaI	GTAC	2 cut(s)	773, 807
RsaNI	GTAC	2 cut(s)	772, 806
RseI	CAYNNNNRTG	1 cut(s)	881
SaqAI	TTAA	3 cut(s)	155, 269, 648
SatI	GCNGC	3 cut(s)	372, 549, 582
Sau3AI	GATC	2 cut(s)	33, 886
Sau96I	GGNCC	1 cut(s)	434
SchI	GAGTC	1 cut(s)	847
ScrFI	CCNGG	4 cut(s)	90, 408, 449, 575
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	2 cut(s)	546, 801
SinI	GGWCC	1 cut(s)	434
SmiMI	CAYNNNNRTG	1 cut(s)	881
SmlI	CTYRAG	2 cut(s)	855, 896
SmoI	CTYRAG	2 cut(s)	855, 896
Sse9I	AATT	6 cut(s)	19, 93, 279, 498, 704, 725
SseBI	AGGCCT	1 cut(s)	894
SsiI	CCGC	2 cut(s)	284, 608
SspMI	CTAG	2 cut(s)	320, 383
StuI	AGGCCT	1 cut(s)	894
StyD4I	CCNGG	4 cut(s)	88, 406, 447, 573
TaaI	ACNGT	4 cut(s)	44, 163, 619, 958
TaiI	ACGT	3 cut(s)	51, 747, 966
TaqI	TCGA	2 cut(s)	78, 396
TasI	AATT	6 cut(s)	19, 93, 279, 498, 704, 725
Tru1I	TTAA	3 cut(s)	155, 269, 648
Tru9I	TTAA	3 cut(s)	155, 269, 648
TscAI	CASTG	1 cut(s)	622
TseFI	GTSAC	3 cut(s)	44, 415, 569
TseI	GCWGC	3 cut(s)	371, 548, 581
Tsp45I	GTSAC	3 cut(s)	44, 415, 569
TspDTI	ATGAA	1 cut(s)	465
TspGWI	ACGGA	4 cut(s)	330, 780, 909, 924
TspRI	CASTG	1 cut(s)	622
Tth111I	GACNNNGTC	1 cut(s)	785
VpaK11BI	GGWCC	1 cut(s)	434
XapI	RAATTY	2 cut(s)	279, 725
XbaI	TCTAGA	1 cut(s)	382
XspI	CTAG	2 cut(s)	320, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.