Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009889

Physical Location & Seq

Genomic Coordinates Reverse (-)

1837228 .. 1839574

Gene Structure 2347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g02140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAAGAATTCTCACGACGTGGTGGTCGATGTCGGAGGCGACGGCGTTTTGGCTAATCATCTGAAGCGCGAGAAGCTCATCATTGATACCGACCCTGGAATCGATGATACCATGGCCATCTTAATGGCATTTCAATCACCGGAGTTGGAAATCCTGGGCTTCACAACAGTATTTGGTAATGTCGCCACAGAAGATGCCACTCGCAATGCCTTGCTTCTGTGTGAGATTGCAGGGCATCCAGGTTTACCTGTGGCGGAGGGAAGTCATGAGCCTCTAAAGGGTGGAAGGCCATGTGTTGCCGACTTTATACATGGTTCTGATGGGTTGGGGAACTTGCATCTACCTCCTCCAAAAACAAAGAAAATTGAGAAGAATGCTGCTGAATTTTTAGTTGATATGGTCTCTGAATATCCTGGTGAAGTTTCTATACTGGCCCTAGGTCCCTTGACAAACTTAGCATTGGCAGTCAAAAGGGATTCTTCATTCGCGAAAAAGGTGAAGAGGTTGGTCGTACTTGGTGGTTCCTTCTTCGCTCTGGGAAATGTAAATCCTGCTGCGGAAGCAAATATTTATGGATCGATCCAGAAGCAGCAGATGTTGTGTTTACGTCTGGGGCTAACATTACCGTTGTTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006152 GO:0006213 GO:0006218 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008477 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019439 GO:0034641 GO:0034655 GO:0034656 GO:0042278 GO:0042454 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0045437 GO:0046108 GO:0046131 GO:0046133 GO:0046135 GO:0046483 GO:0046700 GO:0047622 GO:0047724 GO:0050263 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:0072527 GO:0072529 GO:0072585 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00760 map00240 map00760

Pfam Domains

Protein Families

IU_nuc_hydro

Protein Analysis

213

Amino Acids

22.54

Weight (kDa)

5.52

Isoelectric Point (pI)

38.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36310
fragaria_vesca	FvH4_6g18360 FvH4_6g18360 FvH4_6g18360
malus_domestica	MD12G1022900.v1.1 MD14G1019900.v1.1
prunus_persica	Prupe.7G113700_v2.0.a1 Prupe.7G113700_v2.0.a1 Prupe.7G113700_v2.0.a1 Prupe.7G113700_v2.0.a1
pyrus_communis	pycom12g02140 pycom14g01950
rosa_chinensis	RchiOBHm_Chr3g0472851
rosa_laevigata	RLG00000024051
rosa_roxburghii	Rroxscaffold_6G00408560
rosa_rugosa	Rorug03G0128100
rosa_samantha	Rh3AG180800 Rh3BG207000 Rh3CG204200 Rh3DG168900
rosa_wichuraiana	Rw3G016220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	23
AccII	CGCG	2 cut(s)	69, 488
AciI	CCGC	2 cut(s)	254, 557
AclWI	GGATC	2 cut(s)	574, 583
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	2 cut(s)	7, 383
AcuI	CTGAAG	1 cut(s)	83
AdeI	CACNNNGTG	1 cut(s)	19
AfaI	GTAC	1 cut(s)	513
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	1 cut(s)	134
AjiI	CACGTC	1 cut(s)	19
AjnI	CCWGG	4 cut(s)	94, 153, 238, 412
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
Alw26I	GTCTC	1 cut(s)	406
AlwI	GGATC	2 cut(s)	574, 583
AoxI	GGCC	3 cut(s)	114, 287, 432
ApeKI	GCWGC	3 cut(s)	377, 554, 589
ApoI	RAATTY	2 cut(s)	7, 383
AspA2I	CCTAGG	1 cut(s)	436
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	2 cut(s)	433, 440
AsuHPI	GGTGA	3 cut(s)	129, 428, 508
AvaII	GGWCC	1 cut(s)	440
AvrII	CCTAGG	1 cut(s)	436
BalI	TGGCCA	1 cut(s)	116
BarI	GAAGNNNNNNTAC	2 cut(s)	411, 443
BbvI	GCAGC	3 cut(s)	364, 541, 601
BccI	CCATC	2 cut(s)	125, 314
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	4 cut(s)	96, 155, 240, 414
BcoDI	GTCTC	1 cut(s)	406
BfaI	CTAG	1 cut(s)	437
BisI	GCNGC	3 cut(s)	378, 555, 590
BlnI	CCTAGG	1 cut(s)	436
BlsI	GCNGC	3 cut(s)	379, 556, 591
Bme1390I	CCNGG	4 cut(s)	96, 155, 240, 414
Bme18I	GGWCC	1 cut(s)	440
BmgBI	CACGTC	1 cut(s)	19
BmgT120I	GGNCC	2 cut(s)	433, 440
BmiI	GGNNCC	2 cut(s)	442, 523
BmrFI	CCNGG	4 cut(s)	96, 155, 240, 414
BmsI	GCATC	3 cut(s)	184, 244, 346
Bsa29I	ATCGAT	2 cut(s)	102, 578
BsaI	GGTCTC	1 cut(s)	406
BsaJI	CCNNGG	4 cut(s)	94, 111, 154, 436
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	435
Bse3DI	GCAATG	1 cut(s)	211
BseBI	CCWGG	4 cut(s)	96, 155, 240, 414
BseCI	ATCGAT	2 cut(s)	102, 578
BseDI	CCNNGG	4 cut(s)	94, 111, 154, 436
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMI	GCAATG	1 cut(s)	211
BseNI	ACTGG	1 cut(s)	435
BseRI	GAGGAG	1 cut(s)	336
BseXI	GCAGC	3 cut(s)	364, 541, 601
Bsh1236I	CGCG	2 cut(s)	69, 488
BshFI	GGCC	3 cut(s)	116, 289, 434
BshVI	ATCGAT	2 cut(s)	102, 578
BsiSI	CCGG	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	426
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	1 cut(s)	406
BsmFI	GGGAC	1 cut(s)	426
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	3 cut(s)	116, 289, 434
Bso31I	GGTCTC	1 cut(s)	406
Bsp143I	GATC	2 cut(s)	575, 579
Bsp19I	CCATGG	1 cut(s)	111
Bsp68I	TCGCGA	1 cut(s)	488
BspACI	CCGC	2 cut(s)	254, 557
BspANI	GGCC	3 cut(s)	116, 289, 434
BspDI	ATCGAT	2 cut(s)	102, 578
BspFNI	CGCG	2 cut(s)	69, 488
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	2 cut(s)	442, 523
BspPI	GGATC	2 cut(s)	574, 583
BspTNI	GGTCTC	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	435
BssECI	CCNNGG	4 cut(s)	94, 111, 154, 436
BssMI	GATC	2 cut(s)	575, 579
BssT1I	CCWWGG	2 cut(s)	111, 436
Bst2UI	CCWGG	4 cut(s)	96, 155, 240, 414
Bst4CI	ACNGT	2 cut(s)	169, 627
Bst6I	CTCTTC	1 cut(s)	494
BstDEI	CTNAG	1 cut(s)	454
BstDSI	CCRYGG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	235
BstFNI	CGCG	2 cut(s)	69, 488
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	2 cut(s)	578, 582
BstMAI	GTCTC	1 cut(s)	406
BstMBI	GATC	2 cut(s)	575, 579
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 560
BstNI	CCWGG	4 cut(s)	96, 155, 240, 414
BstSCI	CCNGG	4 cut(s)	94, 153, 238, 412
BstUI	CGCG	2 cut(s)	69, 488
BstV1I	GCAGC	3 cut(s)	364, 541, 601
BstXI	CCANNNNNNTGG	1 cut(s)	124
Bsu15I	ATCGAT	2 cut(s)	102, 578
BsuRI	GGCC	3 cut(s)	116, 289, 434
BsuTUI	ATCGAT	2 cut(s)	102, 578
BtgI	CCRYGG	1 cut(s)	111
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	235
BtuMI	TCGCGA	1 cut(s)	488
CciI	TCATGA	1 cut(s)	265
CfoI	GCGC	1 cut(s)	69
Cfr13I	GGNCC	2 cut(s)	433, 440
ClaI	ATCGAT	2 cut(s)	102, 578
Csp6I	GTAC	1 cut(s)	512
CviAII	CATG	4 cut(s)	112, 266, 291, 311
CviJI	RGCY	8 cut(s)	53, 76, 116, 159, 271, 289, 434, 616
CviKI_1	RGCY	8 cut(s)	53, 76, 116, 159, 271, 289, 434, 616
CviQI	GTAC	1 cut(s)	512
DdeI	CTNAG	1 cut(s)	454
DpnI	GATC	2 cut(s)	577, 581
DpnII	GATC	2 cut(s)	575, 579
DraIII	CACNNNGTG	1 cut(s)	19
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	494
EarI	CTCTTC	1 cut(s)	494
EciI	GGCGGA	1 cut(s)	269
Eco130I	CCWWGG	2 cut(s)	111, 436
Eco31I	GGTCTC	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	440
Eco57I	CTGAAG	1 cut(s)	83
EcoO109I	RGGNCCY	1 cut(s)	440
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	4 cut(s)	94, 153, 238, 412
EcoT14I	CCWWGG	2 cut(s)	111, 436
ErhI	CCWWGG	2 cut(s)	111, 436
FaeI	CATG	4 cut(s)	115, 269, 294, 314
FaiI	YATR	8 cut(s)	113, 267, 292, 308, 312, 398, 428, 573
FalI	AAGNNNNNCTT	2 cut(s)	463, 495
FaqI	GGGAC	1 cut(s)	426
FatI	CATG	4 cut(s)	111, 265, 290, 310
Fnu4HI	GCNGC	3 cut(s)	378, 555, 590
FokI	GGATG	1 cut(s)	222
Fsp4HI	GCNGC	3 cut(s)	378, 555, 590
FspBI	CTAG	1 cut(s)	437
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	3 cut(s)	378, 555, 590
HaeIII	GGCC	3 cut(s)	116, 289, 434
HapII	CCGG	1 cut(s)	140
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	4 cut(s)	115, 269, 294, 314
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HinfI	GANTC	2 cut(s)	99, 476
HpaII	CCGG	1 cut(s)	140
HphI	GGTGA	3 cut(s)	129, 428, 508
Hpy166II	GTNNAC	2 cut(s)	245, 605
Hpy188I	TCNGA	4 cut(s)	35, 63, 319, 406
Hpy188III	TCNNGA	4 cut(s)	14, 266, 487, 583
Hpy8I	GTNNAC	2 cut(s)	245, 605
Hpy99I	CGWCG	2 cut(s)	20, 44
HpyAV	CCTTC	2 cut(s)	279, 535
HpyCH4III	ACNGT	2 cut(s)	169, 627
HpyCH4IV	ACGT	2 cut(s)	18, 607
HpyCH4V	TGCA	2 cut(s)	230, 337
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 560
HpyF3I	CTNAG	1 cut(s)	454
HpySE526I	ACGT	2 cut(s)	18, 607
Hsp92II	CATG	4 cut(s)	115, 269, 294, 314
HspAI	GCGC	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	575, 579
Lsp1109I	GCAGC	3 cut(s)	364, 541, 601
LweI	GCATC	3 cut(s)	184, 244, 346
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	2 cut(s)	18, 607
MalI	GATC	2 cut(s)	577, 581
MboI	GATC	2 cut(s)	575, 579
MboII	GAAGA	6 cut(s)	16, 203, 382, 471, 511, 520
MlsI	TGGCCA	1 cut(s)	116
MluCI	AATT	3 cut(s)	7, 363, 383
MluNI	TGGCCA	1 cut(s)	116
MmeI	TCCRAC	3 cut(s)	13, 126, 612
MnlI	CCTC	6 cut(s)	29, 250, 282, 354, 357, 495
Mox20I	TGGCCA	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	116
MseI	TTAA	1 cut(s)	122
MslI	CAYNNNNRTG	1 cut(s)	122
Msp20I	TGGCCA	1 cut(s)	116
MspI	CCGG	1 cut(s)	140
MspR9I	CCNGG	4 cut(s)	96, 155, 240, 414
Mva1269I	GAATGC	1 cut(s)	379
MvaI	CCWGG	4 cut(s)	96, 155, 240, 414
MvnI	CGCG	2 cut(s)	69, 488
MwoI	GCNNNNNNNGC	2 cut(s)	73, 560
NcoI	CCATGG	1 cut(s)	111
NdeII	GATC	2 cut(s)	575, 579
NlaIII	CATG	4 cut(s)	115, 269, 294, 314
NlaIV	GGNNCC	2 cut(s)	442, 523
NruI	TCGCGA	1 cut(s)	488
PagI	TCATGA	1 cut(s)	265
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PctI	GAATGC	1 cut(s)	379
PfeI	GAWTC	2 cut(s)	99, 476
PkrI	GCNGC	3 cut(s)	379, 556, 591
PpuMI	RGGWCCY	1 cut(s)	440
Psp5II	RGGWCCY	1 cut(s)	440
Psp6I	CCWGG	4 cut(s)	94, 153, 238, 412
PspGI	CCWGG	4 cut(s)	94, 153, 238, 412
PspN4I	GGNNCC	2 cut(s)	442, 523
PspPI	GGNCC	2 cut(s)	433, 440
PspPPI	RGGWCCY	1 cut(s)	440
RruI	TCGCGA	1 cut(s)	488
RsaI	GTAC	1 cut(s)	513
RsaNI	GTAC	1 cut(s)	512
RseI	CAYNNNNRTG	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	122
SatI	GCNGC	3 cut(s)	378, 555, 590
Sau3AI	GATC	2 cut(s)	575, 579
Sau96I	GGNCC	2 cut(s)	433, 440
ScrFI	CCNGG	4 cut(s)	96, 155, 240, 414
SetI	ASST	9 cut(s)	21, 78, 244, 250, 346, 442, 498, 506, 610
SfaNI	GCATC	3 cut(s)	184, 244, 346
SinI	GGWCC	1 cut(s)	440
SmiMI	CAYNNNNRTG	1 cut(s)	122
Sse9I	AATT	3 cut(s)	7, 363, 383
SsiI	CCGC	2 cut(s)	254, 557
SspI	AATATT	1 cut(s)	568
SspMI	CTAG	1 cut(s)	437
StyD4I	CCNGG	4 cut(s)	94, 153, 238, 412
StyI	CCWWGG	2 cut(s)	111, 436
TaaI	ACNGT	2 cut(s)	169, 627
TaiI	ACGT	2 cut(s)	21, 610
TaqI	TCGA	3 cut(s)	27, 102, 578
TasI	AATT	3 cut(s)	7, 363, 383
TfiI	GAWTC	2 cut(s)	99, 476
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TseI	GCWGC	3 cut(s)	377, 554, 589
TspDTI	ATGAA	2 cut(s)	17, 471
VpaK11BI	GGWCC	1 cut(s)	440
XapI	RAATTY	2 cut(s)	7, 383
XmaJI	CCTAGG	1 cut(s)	436
XspI	CTAG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.