Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009889

Physical Location & Seq

Genomic Coordinates Reverse (-)

10374430 .. 10379960

Gene Structure 5531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0128100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3312 bp

ATGCCAACTGCGGAAGCAGACAGGAATCAGAGAATTGCCTGTTCCCAGAACCATGCGTACTTACACTCGGCCCAGCCACCCCCGAAACCCACTTTTGCCTCTCTCCTCAGCTCTGAATCCCCTCCTCTTGACTTCTGCATAGACGACCTCCAGCCTCCATTTATTGAGAATGGACTTCTCTCAGTCCGTATCTCGGAGGAACCATATCTTCGGGGACTAGCGCGTTGCAAAACCAATTTAGTAGGGCGCTTGGTGTTGCCCTCAAACTCATCTCCATTAAAGTCACATGATCTGCAGCGGCAGCTCAGCGCTCTGTGGCCTTCTATCAACAATTGGTCCGTCTCCCCCCTTGGCAGGGGTTTCTTTATGCTTCAGTTTCAGAGTTTGGAAGACATGCAAAAAATCTGGTCGTTGGGATCGATTAGTTTGCAACAGGGGGCCCTCCGTCTAATTAAATGGTCACCTTGCTTCTCCCCTTCTACGTACAAGAACACATTCGCCCAAGTCTGGGTTCGACTTTGGGACTTGGGGTTTGATTTCTGGGAGCAACAAACATTGTTCGAGATAGCTAGGGGAATTGGTGTCCCCTTGAAACTCGACTCGAGTACGGTGAACCGATCTGTGGGGTTGTACGCTAGGGTTCTAGTGGATGTGGATCTTTCTCAGGTTTTGCCTCAGCAGCTGCGGGTAACTCGTTCTACAGGTCAGCAAATTGTTATCGGTGTGGAGTTTGAGGCTTTATCGACTGTTTGTTCGAAGTGTGGAATTGTTGGGCATCAAAGTACTACCTGCAGAGTGTTGAATGTGGTGCCCCCTATGGACGATGCAACGGTAGTACGTGGCCGATCCCTCCAGCGATCGAGTCGGTGGCAAAGAAGAACTAATGCATCGCGTAAGAATTCTAAACAGAAGATAGAGAATGGCACGGTGGGAAGGCAGACAGTACTGGAAAAAGTGGTTGCTCCGGTTGACCTTGTTCCACACGAGCAAGTGATGCAGGCCAATAGGGTGAATTCGGACCAGGTTTGTCAACAAATTTCAGATCAGGCCTCATCTTTTGACAGTGTTCCTCCGGGGTTTCAGAGGTTAGAGCCAACTGCCTCTGAAGTCGGCATGGCTTCTACTGGTGATATCACCTCTCCAGGGGATTGTGAGATTGGTAAAACAAGCTTGGAGCCTTCTTGTTATGCGGTTCACCCAACCTCTCTTTTAATTGGTGAAACCTCCAACATTAGAGAGGAGGATGATGTAATGGTTTTTATGCAGGCTAGCCCCCTTGGCCTTAATGCCATTACCGAGTTTATAGAGGAATATGCAGCTAATTCTGGCCAGGTTGTGAATAAAAACAAGTCACTGTTATTCTTAGAGGCCTCAGCTCGTCCTCGGCAGAGTATCATTATTCAATCATTGGGCATACAGTTAGGAACTCTTCCTTTCAACTATCTTGGAGTCCCCATCTTTCAAGGTTGTCCTACTAATGCATTTTTACGACCCATAACGGATAAGGTCCGTTGTAAACTCAGCTCCTGGAAGGGTAAGTTGTTATCTCAAGCTGCTAGATTACAACTTATTGATTCTATAATACAGAGCTTACTCATCTATAGCTTTCATATCTATGCCTGGCCCCATTCTCTCTTGAAAGTGGTTCAAAGGTGGATTCGTAACTTCTTTTGGAATGGGGACCCATTGAAAGATGGAGGAGCTTTGGTTTCTTGGGATCAAGTATGTCAACCTAAGGACGGAGGTGGTTTGAACCTAAAGAACCTTTTTGTGTTAAGCCAAGCCTTGCTACTTAAACGTGGGTGGGAGGTTGTTTCTAACGTTTCACCTTCAGCGAAGTTTCTACATGCCCGTTTTCTTTCGAATGGGTTACAACCTTGTACTTACTACAAAAAATCCTCAGTATGGCTAGGTCTAAAAAGAGTTTGGCGAGTTCTACTCTCCAAGCTTCGTTGGATAATTGGAGATGGTAAGTCGATAAGGTTGTGGAAAGATAATTGGATGGGTGACATCTTAGGAGAGGCTTTTCATTTTGATTCCCAAACTTTGGGGCAACTTGACAATAAGATCAGTGACTTCATTGTGCATGGAAGATGGGATTTGCCAGATATTTTCCTCCAGGCCTTTCCCGATGTAGCGGCTGCTCTCACCTCTCATACCCTTCCTTTCGAACCTATGAGGGACCAGGTTGTTTGGTCCGATACTTCATCGGGTGTTCCAACGGCTAAGGATGCGTATGGCACCTTGTCCCAATCGCTTCCCAAGTTACATTGGGGTTCGTTGATTTGGCATAAGGCAATACAACCACGGAAGAGCATTTGCACCTGGAAGATTCTTCACAGGAAGATTCTTACTGATGAGCGGCTACAAAGGAGGGGTGTGGCCCTTCCATCTAAATGCAGCTTTTGTGGGTCGGCTGGGGAATCATGGAAGCACCTCTTTTGGAGCTGCATGGTTTCGAGGATGATTTGGAGGTGGTGTTTTAGCATGTTCAAGTTCCCTTCCATGCAACGACACTCTATACATCAACTCCTTTCATCAACCTTCATCTCTTCTCTCTCTCCACCAGTGAAATTGCTTTGGCGCATCACTCTTTGCAATCTTTTTTGGTGCTTTTGGTCAGAAAGGAATTGGTTGAGACATGAGGGTGGCACTTTCAACCTCATCAGATTCATGCGCTTTTTCTTATTGTCCTTAAAAGAGTCAGCAGGTATGGCTTTTGTCCATTCTTCCCCAACTTCAACTTATCCTATTTTTAATATCTTATTACTTTCATCTTTGAGAGCAACCTCTCCTCGTTTCATAAAAGTGACCTGGACGCCTCCCATTCCCCATTGGGTCAAGATTAACACCGACGGTTCTTTTCGAGATGCGGACAATGCTGGCTATGGTGGTATCGTTCGTGATGCTGAGGGTGCTTTTGTCCATGCTTTTGCTTCTAGGGTAAGAGTTCCTAGTGCCCTTGATGCTAAGGTTCTTGCTTTCCTGGAAGCAATTGGGGTGGCTAGGTCACGTAATTGGCGCCATTTGTGGATTGAGACGGACTCAGCGGTAGTGGTCAGATATTTTGCGTCCCCATCTCTTGTCCCTTGGAGGCTGCGCATTGAGTGGCTAAACGGTATGGTTTTAGCAAGACAATTGCAGTTACGTGTCACTCACATCTTTCGGGAAGGGAATGTTGTGGCAGATGTGTTAGCTAACTACGGTGCATCACATGAAGGTACTCACAGATGGGATTCGTTGCCCCAGTTTTTGTCTTCTGCCTTTGGTCGAGACTTTGTTTCATGGCCGGCCTATAGATTTGCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006152 GO:0006213 GO:0006218 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008477 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019439 GO:0034641 GO:0034655 GO:0034656 GO:0042278 GO:0042454 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0045437 GO:0046108 GO:0046131 GO:0046133 GO:0046135 GO:0046483 GO:0046700 GO:0047622 GO:0047724 GO:0050263 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:0072527 GO:0072529 GO:0072585 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00760 map00240 map00760

Pfam Domains

Protein Families

IU_nuc_hydro

Protein Analysis

1103

Amino Acids

124.43

Weight (kDa)

9.47

Isoelectric Point (pI)

50.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	74 - 160	1.4e-08	Domain of unknown function (DUF4283)
zf-CCHC_4	PF14392	218 - 265	5.1e-06	Zinc knuckle
zf-RVT	PF13966	742 - 824	3.6e-19	zinc-binding in reverse transcriptase
RVT_3	PF13456	950 - 1068	8.7e-15	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36310
fragaria_vesca	FvH4_6g18360 FvH4_6g18360 FvH4_6g18360
malus_domestica	MD12G1022900.v1.1 MD14G1019900.v1.1
prunus_persica	Prupe.7G113700_v2.0.a1 Prupe.7G113700_v2.0.a1 Prupe.7G113700_v2.0.a1 Prupe.7G113700_v2.0.a1
pyrus_communis	pycom12g02140 pycom14g01950
rosa_chinensis	RchiOBHm_Chr3g0472851
rosa_laevigata	RLG00000024051
rosa_roxburghii	Rroxscaffold_6G00408560
rosa_rugosa	Rorug03G0128100
rosa_samantha	Rh3AG180800 Rh3BG207000 Rh3CG204200 Rh3DG168900
rosa_wichuraiana	Rw3G016220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	3101
Acc36I	ACCTGC	2 cut(s)	797, 2699
AccB1I	GGYRCC	3 cut(s)	808, 2240, 3021
AccB7I	CCANNNNNTGG	1 cut(s)	2047
AccBSI	CCGCTC	1 cut(s)	2362
AccII	CGCG	2 cut(s)	223, 892
AciI	CCGC	8 cut(s)	11, 298, 685, 1190, 2138, 2362, 2873, 3050
AclI	AACGTT	1 cut(s)	1821
AclWI	GGATC	4 cut(s)	424, 663, 840, 1725
AcoI	YGGCCR	3 cut(s)	841, 1327, 3287
AcsI	RAATTY	3 cut(s)	898, 1012, 1035
AcuI	CTGAAG	3 cut(s)	356, 1125, 1815
AcyI	GRCGYC	2 cut(s)	2819, 3022
AfaI	GTAC	9 cut(s)	59, 485, 607, 632, 784, 837, 945, 1882, 3223
AfeI	AGCGCT	1 cut(s)	310
AflIII	ACRYGT	1 cut(s)	3148
AjuI	GAANNNNNNNTTGG	2 cut(s)	495, 527
Alw26I	GTCTC	4 cut(s)	346, 2632, 3032, 3267
AlwI	GGATC	4 cut(s)	424, 663, 840, 1725
AlwNI	CAGNNNCTG	2 cut(s)	682, 1527
Ama87I	CYCGRG	1 cut(s)	601
Aor51HI	AGCGCT	1 cut(s)	310
ApaI	GGGCCC	1 cut(s)	442
ApoI	RAATTY	3 cut(s)	898, 1012, 1035
ArsI	GACNNNNNNTTYG	4 cut(s)	515, 547, 736, 768
Asp700I	GAANNNNTTC	1 cut(s)	494
AspLEI	GCGC	7 cut(s)	223, 249, 311, 2586, 2679, 3024, 3102
AsuC2I	CCSGG	1 cut(s)	1074
AsuII	TTCGAA	3 cut(s)	755, 1862, 2169
AsuNHI	GCTAGC	1 cut(s)	1268
AvaI	CYCGRG	1 cut(s)	601
AvaII	GGWCC	6 cut(s)	336, 1018, 1507, 1681, 2182, 2196
AxyI	CCTNAGG	1 cut(s)	1734
BaeGI	GKGCMC	3 cut(s)	442, 813, 2962
BalI	TGGCCA	1 cut(s)	1329
BanI	GGYRCC	3 cut(s)	808, 2240, 3021
BanII	GRGCYC	1 cut(s)	442
BauI	CACGAG	1 cut(s)	983
BbsI	GAAGAC	2 cut(s)	396, 3249
BbvCI	CCTCAGC	4 cut(s)	107, 675, 1372, 2910
BccI	CCATC	8 cut(s)	1463, 1688, 1961, 1996, 2088, 2398, 3085, 3225
BceAI	ACGGC	1 cut(s)	2238
BcgI	CGANNNNNNTGC	2 cut(s)	409, 443
BcnI	CCSGG	1 cut(s)	1074
BcoDI	GTCTC	4 cut(s)	346, 2632, 3032, 3267
BfmI	CTRYAG	5 cut(s)	293, 699, 790, 1600, 3295
BfoI	RGCGCY	3 cut(s)	250, 312, 3025
BfuAI	ACCTGC	2 cut(s)	797, 2699
BglI	GCCNNNNNGGC	1 cut(s)	1278
BlpI	GCTNAGC	1 cut(s)	305
BmcAI	AGTACT	2 cut(s)	784, 945
Bme18I	GGWCC	6 cut(s)	336, 1018, 1507, 1681, 2182, 2196
BmeT110I	CYCGRG	1 cut(s)	601
BmrI	ACTGGG	1 cut(s)	3241
BmtI	GCTAGC	1 cut(s)	1272
BmuI	ACTGGG	1 cut(s)	3241
BpiI	GAAGAC	2 cut(s)	396, 3249
BplI	GAGNNNNNCTC	4 cut(s)	1923, 1955, 3029, 3061
BpmI	CTGGAG	4 cut(s)	134, 836, 1125, 2102
Bpu10I	CCTNAGC	6 cut(s)	107, 675, 1372, 2226, 2910, 2970
Bpu1102I	GCTNAGC	1 cut(s)	305
Bpu14I	TTCGAA	3 cut(s)	755, 1862, 2169
BpuEI	CTTGAG	1 cut(s)	1533
BpuMI	CCSGG	1 cut(s)	1074
Bsa29I	ATCGAT	1 cut(s)	419
BsaAI	YACGTR	4 cut(s)	483, 839, 3014, 3149
BsaBI	GATNNNNATC	1 cut(s)	654
BsaHI	GRCGYC	2 cut(s)	2819, 3022
BsaJI	CCNNGG	7 cut(s)	349, 1073, 1142, 1276, 1382, 2306, 3089
BsaWI	WCCGGW	1 cut(s)	964
BsaXI	ACNNNNNCTCC	6 cut(s)	1692, 1722, 2464, 2494, 2514, 2544
Bse118I	RCCGGY	1 cut(s)	3289
Bse1I	ACTGG	4 cut(s)	951, 1129, 2567, 3247
Bse21I	CCTNAGG	1 cut(s)	1734
Bse8I	GATNNNNATC	1 cut(s)	654
BseCI	ATCGAT	1 cut(s)	419
BseDI	CCNNGG	7 cut(s)	349, 1073, 1142, 1276, 1382, 2306, 3089
BseGI	GGATG	5 cut(s)	655, 1249, 2007, 2236, 2469
BseJI	GATNNNNATC	1 cut(s)	654
BseNI	ACTGG	4 cut(s)	951, 1129, 2567, 3247
BseRI	GAGGAG	5 cut(s)	95, 114, 1253, 1713, 2784
BseSI	GKGCMC	3 cut(s)	442, 813, 2962
BseYI	CCCAGC	2 cut(s)	72, 2417
Bsh1236I	CGCG	2 cut(s)	223, 892
Bsh1285I	CGRYCG	1 cut(s)	860
BshNI	GGYRCC	3 cut(s)	808, 2240, 3021
BshVI	ATCGAT	1 cut(s)	419
BsiEI	CGRYCG	1 cut(s)	860
BsiHKCI	CYCGRG	1 cut(s)	601
BsiSI	CCGG	3 cut(s)	965, 1073, 3290
BslFI	GGGAC	9 cut(s)	228, 536, 569, 1436, 1694, 2195, 2233, 3058, 3071
BsmAI	GTCTC	4 cut(s)	346, 2632, 3032, 3267
BsmBI	CGTCTC	2 cut(s)	346, 3032
BsmFI	GGGAC	9 cut(s)	228, 536, 569, 1436, 1694, 2195, 2233, 3058, 3071
BsoBI	CYCGRG	1 cut(s)	601
Bsp119I	TTCGAA	3 cut(s)	755, 1862, 2169
Bsp120I	GGGCCC	1 cut(s)	438
Bsp1286I	GDGCHC	3 cut(s)	442, 813, 2962
Bsp143I	GATC	9 cut(s)	289, 416, 617, 655, 845, 857, 1042, 1717, 2067
Bsp1720I	GCTNAGC	1 cut(s)	305
BspACI	CCGC	8 cut(s)	11, 298, 685, 1190, 2138, 2362, 2873, 3050
BspDI	ATCGAT	1 cut(s)	419
BspFNI	CGCG	2 cut(s)	223, 892
BspMAI	CTGCAG	2 cut(s)	297, 794
BspMI	ACCTGC	2 cut(s)	797, 2699
BspOI	GCTAGC	1 cut(s)	1272
BspPI	GGATC	4 cut(s)	424, 663, 840, 1725
BspQI	GCTCTTC	1 cut(s)	2306
BspT104I	TTCGAA	3 cut(s)	755, 1862, 2169
BspT107I	GGYRCC	3 cut(s)	808, 2240, 3021
BsrBI	CCGCTC	1 cut(s)	2362
BsrFI	RCCGGY	1 cut(s)	3289
BsrI	ACTGG	4 cut(s)	951, 1129, 2567, 3247
BssAI	RCCGGY	1 cut(s)	3289
BssECI	CCNNGG	7 cut(s)	349, 1073, 1142, 1276, 1382, 2306, 3089
BssMI	GATC	9 cut(s)	289, 416, 617, 655, 845, 857, 1042, 1717, 2067
BssNI	GRCGYC	2 cut(s)	2819, 3022
BssSI	CACGAG	1 cut(s)	983
BssT1I	CCWWGG	3 cut(s)	349, 1276, 3089
Bst2BI	CACGAG	1 cut(s)	983
Bst6I	CTCTTC	3 cut(s)	1434, 2306, 2557
BstACI	GRCGYC	2 cut(s)	2819, 3022
BstAPI	GCANNNNNTGC	1 cut(s)	994
BstBAI	YACGTR	4 cut(s)	483, 839, 3014, 3149
BstBI	TTCGAA	3 cut(s)	755, 1862, 2169
BstC8I	GCNNGC	5 cut(s)	999, 1266, 1270, 2884, 3291
BstDSI	CCRYGG	1 cut(s)	2306
BstEII	GGTNACC	1 cut(s)	459
BstF5I	GGATG	5 cut(s)	655, 1249, 2007, 2236, 2469
BstFNI	CGCG	2 cut(s)	223, 892
BstH2I	RGCGCY	3 cut(s)	250, 312, 3025
BstHHI	GCGC	7 cut(s)	223, 249, 311, 2586, 2679, 3024, 3102
BstKTI	GATC	9 cut(s)	292, 419, 620, 658, 848, 860, 1045, 1720, 2070
BstMAI	GTCTC	4 cut(s)	346, 2632, 3032, 3267
BstMBI	GATC	9 cut(s)	289, 416, 617, 655, 845, 857, 1042, 1717, 2067
BstMCI	CGRYCG	1 cut(s)	860
BstMWI	GCNNNNNNNGC	9 cut(s)	301, 679, 994, 1278, 2231, 2714, 2879, 2915, 2966
BstNSI	RCATGY	3 cut(s)	397, 1850, 2491
BstPI	GGTNACC	1 cut(s)	459
BstSFI	CTRYAG	5 cut(s)	293, 699, 790, 1600, 3295
BstSLI	GKGCMC	3 cut(s)	442, 813, 2962
BstSNI	TACGTA	1 cut(s)	483
BstUI	CGCG	2 cut(s)	223, 892
BstV2I	GAAGAC	2 cut(s)	396, 3249
BstX2I	RGATCY	1 cut(s)	655
BstYI	RGATCY	1 cut(s)	655
Bsu15I	ATCGAT	1 cut(s)	419
Bsu36I	CCTNAGG	1 cut(s)	1734
BsuTUI	ATCGAT	1 cut(s)	419
BtgI	CCRYGG	1 cut(s)	2306
BtgZI	GCGATG	1 cut(s)	873
BtsCI	GGATG	5 cut(s)	655, 1249, 2007, 2236, 2469
BtsIMutI	CAGTG	4 cut(s)	1069, 1352, 2077, 2574
BveI	ACCTGC	2 cut(s)	797, 2699
Cac8I	GCNNGC	5 cut(s)	999, 1266, 1270, 2884, 3291
CaiI	CAGNNNCTG	2 cut(s)	682, 1527
CfoI	GCGC	7 cut(s)	223, 249, 311, 2586, 2679, 3024, 3102
Cfr10I	RCCGGY	1 cut(s)	3289
ClaI	ATCGAT	1 cut(s)	419
CseI	GACGC	2 cut(s)	2827, 3060
CsiI	ACCWGGT	2 cut(s)	1020, 2184
Csp6I	GTAC	9 cut(s)	58, 484, 606, 631, 783, 836, 944, 1881, 3222
CspCI	CAANNNNNGTGG	2 cut(s)	2982, 3017
CviQI	GTAC	9 cut(s)	58, 484, 606, 631, 783, 836, 944, 1881, 3222
DinI	GGCGCC	1 cut(s)	3023
DpnI	GATC	9 cut(s)	291, 418, 619, 657, 847, 859, 1044, 1719, 2069
DpnII	GATC	9 cut(s)	289, 416, 617, 655, 845, 857, 1042, 1717, 2067
EaeI	YGGCCR	3 cut(s)	841, 1327, 3287
Eam1104I	CTCTTC	3 cut(s)	1434, 2306, 2557
EarI	CTCTTC	3 cut(s)	1434, 2306, 2557
Eco105I	TACGTA	1 cut(s)	483
Eco130I	CCWWGG	3 cut(s)	349, 1276, 3089
Eco147I	AGGCCT	3 cut(s)	1049, 1370, 2123
Eco24I	GRGCYC	1 cut(s)	442
Eco32I	GATATC	1 cut(s)	1132
Eco47I	GGWCC	6 cut(s)	336, 1018, 1507, 1681, 2182, 2196
Eco47III	AGCGCT	1 cut(s)	310
Eco57I	CTGAAG	3 cut(s)	356, 1125, 1815
Eco81I	CCTNAGG	1 cut(s)	1734
Eco88I	CYCGRG	1 cut(s)	601
Eco91I	GGTNACC	1 cut(s)	459
EcoO109I	RGGNCCY	3 cut(s)	438, 439, 1681
EcoO65I	GGTNACC	1 cut(s)	459
EcoRI	GAATTC	2 cut(s)	898, 1012
EcoRV	GATATC	1 cut(s)	1132
EcoT14I	CCWWGG	3 cut(s)	349, 1276, 3089
EcoT22I	ATGCAT	2 cut(s)	889, 1483
EcoT38I	GRGCYC	1 cut(s)	442
EgeI	GGCGCC	1 cut(s)	3023
EheI	GGCGCC	1 cut(s)	3023
ErhI	CCWWGG	3 cut(s)	349, 1276, 3089
Esp3I	CGTCTC	2 cut(s)	346, 3032
FalI	AAGNNNNNCTT	2 cut(s)	2423, 2455
FaqI	GGGAC	9 cut(s)	228, 536, 569, 1436, 1694, 2195, 2233, 3058, 3071
FauI	CCCGC	1 cut(s)	678
FokI	GGATG	5 cut(s)	662, 1256, 2014, 2243, 2476
FriOI	GRGCYC	1 cut(s)	442
FseI	GGCCGGCC	1 cut(s)	3293
FspI	TGCGCA	1 cut(s)	3101
GlaI	GCGC	7 cut(s)	222, 248, 310, 2585, 2678, 3023, 3101
GsaI	CCCAGC	2 cut(s)	76, 2421
GsuI	CTGGAG	4 cut(s)	134, 836, 1125, 2102
HaeII	RGCGCY	3 cut(s)	250, 312, 3025
HapII	CCGG	3 cut(s)	965, 1073, 3290
HgaI	GACGC	2 cut(s)	2827, 3060
HhaI	GCGC	7 cut(s)	223, 249, 311, 2586, 2679, 3024, 3102
Hin1I	GRCGYC	2 cut(s)	2819, 3022
Hin6I	GCGC	7 cut(s)	221, 247, 309, 2584, 2677, 3022, 3100
HinP1I	GCGC	7 cut(s)	221, 247, 309, 2584, 2677, 3022, 3100
HincII	GTYRAC	3 cut(s)	970, 1031, 1730
HindII	GTYRAC	3 cut(s)	970, 1031, 1730
HindIII	AAGCTT	2 cut(s)	1168, 1946
HpaII	CCGG	3 cut(s)	965, 1073, 3290
Hpy166II	GTNNAC	6 cut(s)	613, 970, 1031, 1195, 1517, 1730
Hpy188III	TCNNGA	9 cut(s)	128, 562, 1636, 2129, 2842, 2867, 2903, 3167, 3272
Hpy8I	GTNNAC	6 cut(s)	613, 970, 1031, 1195, 1517, 1730
Hpy99I	CGWCG	1 cut(s)	2858
HpyCH4IV	ACGT	6 cut(s)	482, 838, 1798, 1821, 3013, 3148
HpyF10VI	GCNNNNNNNGC	9 cut(s)	301, 679, 994, 1278, 2231, 2714, 2879, 2915, 2966
HpySE526I	ACGT	6 cut(s)	482, 838, 1798, 1821, 3013, 3148
Hsp92I	GRCGYC	2 cut(s)	2819, 3022
HspAI	GCGC	7 cut(s)	221, 247, 309, 2584, 2677, 3022, 3100
KasI	GGCGCC	1 cut(s)	3021
KflI	GGGWCCC	1 cut(s)	1681
KroI	GCCGGC	1 cut(s)	3289
KroNI	GCCGGC	1 cut(s)	3291
Kzo9I	GATC	9 cut(s)	289, 416, 617, 655, 845, 857, 1042, 1717, 2067
LguI	GCTCTTC	1 cut(s)	2306
LmnI	GCTCC	6 cut(s)	544, 967, 1174, 1529, 1700, 2445
MabI	ACCWGGT	2 cut(s)	1020, 2184
MaeII	ACGT	6 cut(s)	482, 838, 1798, 1821, 3013, 3148
MalI	GATC	9 cut(s)	291, 418, 619, 657, 847, 859, 1044, 1719, 2069
MbiI	CCGCTC	1 cut(s)	2362
MboI	GATC	9 cut(s)	289, 416, 617, 655, 845, 857, 1042, 1717, 2067
MfeI	CAATTG	3 cut(s)	331, 2994, 3137
MflI	RGATCY	1 cut(s)	655
MhlI	GDGCHC	3 cut(s)	442, 813, 2962
MlsI	TGGCCA	1 cut(s)	1329
MluNI	TGGCCA	1 cut(s)	1329
Mly113I	GGCGCC	1 cut(s)	3022
MlyI	GAGTC	5 cut(s)	593, 871, 1458, 2711, 3038
MmeI	TCCRAC	3 cut(s)	1251, 1934, 2243
Mox20I	TGGCCA	1 cut(s)	1329
Mph1103I	ATGCAT	2 cut(s)	889, 1483
MroNI	GCCGGC	1 cut(s)	3289
MroXI	GAANNNNTTC	1 cut(s)	494
MscI	TGGCCA	1 cut(s)	1329
MseI	TTAA	9 cut(s)	278, 453, 1211, 1284, 1775, 1794, 2696, 2757, 2847
MslI	CAYNNNNRTG	4 cut(s)	1614, 2395, 2646, 2807
Msp20I	TGGCCA	1 cut(s)	1329
MspA1I	CMGCKG	3 cut(s)	298, 682, 3050
MspI	CCGG	3 cut(s)	965, 1073, 3290
MunI	CAATTG	3 cut(s)	331, 2994, 3137
MvnI	CGCG	2 cut(s)	223, 892
MwoI	GCNNNNNNNGC	9 cut(s)	301, 679, 994, 1278, 2231, 2714, 2879, 2915, 2966
NaeI	GCCGGC	1 cut(s)	3291
NarI	GGCGCC	1 cut(s)	3022
NciI	CCSGG	1 cut(s)	1074
NdeII	GATC	9 cut(s)	289, 416, 617, 655, 845, 857, 1042, 1717, 2067
NgoMIV	GCCGGC	1 cut(s)	3289
NheI	GCTAGC	1 cut(s)	1268
NmeAIII	GCCGAG	2 cut(s)	47, 1363
NmuCI	GTSAC	8 cut(s)	282, 459, 1350, 2006, 2072, 2809, 3009, 3151
NsbI	TGCGCA	1 cut(s)	3101
NsiI	ATGCAT	2 cut(s)	889, 1483
NspI	RCATGY	3 cut(s)	397, 1850, 2491
NspV	TTCGAA	3 cut(s)	755, 1862, 2169
PaeR7I	CTCGAG	1 cut(s)	601
PceI	AGGCCT	3 cut(s)	1049, 1370, 2123
PciSI	GCTCTTC	1 cut(s)	2306
PcsI	WCGNNNNNNNCGW	1 cut(s)	416
PdiI	GCCGGC	1 cut(s)	3291
PdmI	GAANNNNTTC	1 cut(s)	494
PflMI	CCANNNNNTGG	1 cut(s)	2047
PfoI	TCCNGGA	2 cut(s)	1526, 2985
Ple19I	CGATCG	1 cut(s)	860
PleI	GAGTC	5 cut(s)	593, 870, 1457, 2710, 3038
PluTI	GGCGCC	1 cut(s)	3025
PpsI	GAGTC	5 cut(s)	593, 870, 1457, 2710, 3038
Ppu21I	YACGTR	4 cut(s)	483, 839, 3014, 3149
PpuMI	RGGWCCY	1 cut(s)	1681
Psp1406I	AACGTT	1 cut(s)	1821
Psp5II	RGGWCCY	1 cut(s)	1681
PspEI	GGTNACC	1 cut(s)	459
PspFI	CCCAGC	2 cut(s)	72, 2417
PspOMI	GGGCCC	1 cut(s)	438
PspPPI	RGGWCCY	1 cut(s)	1681
PspXI	VCTCGAGB	1 cut(s)	601
PsrI	GAACNNNNNNTAC	2 cut(s)	41, 73
PstI	CTGCAG	2 cut(s)	297, 794
PstNI	CAGNNNCTG	2 cut(s)	682, 1527
PsuI	RGATCY	1 cut(s)	655
PvuI	CGATCG	1 cut(s)	860
PvuII	CAGCTG	1 cut(s)	682
RigI	GGCCGGCC	1 cut(s)	3293
RsaI	GTAC	9 cut(s)	59, 485, 607, 632, 784, 837, 945, 1882, 3223
RsaNI	GTAC	9 cut(s)	58, 484, 606, 631, 783, 836, 944, 1881, 3222
RseI	CAYNNNNRTG	4 cut(s)	1614, 2395, 2646, 2807
SapI	GCTCTTC	1 cut(s)	2306
SaqAI	TTAA	9 cut(s)	278, 453, 1211, 1284, 1775, 1794, 2696, 2757, 2847
Sau3AI	GATC	9 cut(s)	289, 416, 617, 655, 845, 857, 1042, 1717, 2067
ScaI	AGTACT	2 cut(s)	784, 945
SchI	GAGTC	5 cut(s)	593, 871, 1458, 2711, 3038
SduI	GDGCHC	3 cut(s)	442, 813, 2962
SexAI	ACCWGGT	2 cut(s)	1020, 2184
SfcI	CTRYAG	5 cut(s)	293, 699, 790, 1600, 3295
SfoI	GGCGCC	1 cut(s)	3023
Sfr274I	CTCGAG	1 cut(s)	601
SfuI	TTCGAA	3 cut(s)	755, 1862, 2169
SinI	GGWCC	6 cut(s)	336, 1018, 1507, 1681, 2182, 2196
SlaI	CTCGAG	1 cut(s)	601
SmiMI	CAYNNNNRTG	4 cut(s)	1614, 2395, 2646, 2807
SmlI	CTYRAG	2 cut(s)	601, 1548
SmoI	CTYRAG	2 cut(s)	601, 1548
SnaBI	TACGTA	1 cut(s)	483
SseBI	AGGCCT	3 cut(s)	1049, 1370, 2123
SsiI	CCGC	8 cut(s)	11, 298, 685, 1190, 2138, 2362, 2873, 3050
SspDI	GGCGCC	1 cut(s)	3021
StuI	AGGCCT	3 cut(s)	1049, 1370, 2123
StyI	CCWWGG	3 cut(s)	349, 1276, 3089
TaiI	ACGT	6 cut(s)	485, 841, 1801, 1824, 3016, 3151
TatI	WGTACW	3 cut(s)	782, 943, 1880
TauI	GCSGC	3 cut(s)	301, 2141, 2365
Tru1I	TTAA	9 cut(s)	278, 453, 1211, 1284, 1775, 1794, 2696, 2757, 2847
Tru9I	TTAA	9 cut(s)	278, 453, 1211, 1284, 1775, 1794, 2696, 2757, 2847
TscAI	CASTG	4 cut(s)	1069, 1359, 2077, 2574
TseFI	GTSAC	8 cut(s)	282, 459, 1350, 2006, 2072, 2809, 3009, 3151
Tsp45I	GTSAC	8 cut(s)	282, 459, 1350, 2006, 2072, 2809, 3009, 3151
TspGWI	ACGGA	8 cut(s)	176, 328, 434, 1499, 1514, 1755, 2323, 3056
TspRI	CASTG	4 cut(s)	1069, 1359, 2077, 2574
Van91I	CCANNNNNTGG	1 cut(s)	2047
VpaK11BI	GGWCC	6 cut(s)	336, 1018, 1507, 1681, 2182, 2196
XapI	RAATTY	3 cut(s)	898, 1012, 1035
XceI	RCATGY	3 cut(s)	397, 1850, 2491
XhoI	CTCGAG	1 cut(s)	601
XmnI	GAANNNNTTC	1 cut(s)	494
ZrmI	AGTACT	2 cut(s)	784, 945
Zsp2I	ATGCAT	2 cut(s)	889, 1483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.