Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009889

Physical Location & Seq

Genomic Coordinates Forward (+)

13940579 .. 13944422

Gene Structure 3844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G113700.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGACGAATACACACGGTGTGGTGCTCGATGGCGAAAGAGACGGCGTTTTGGACTGCCAGCTGAAGCGTGAGAAGCTCATTATTGATACTGACCCTGGAATTGATGATACCATAGCTATCTTAATGGCATTTCAAACTCCAGAGTTGGAAGTCTTGGGGTTGACAACAATATTTGGTAATGTTACCACAGAAGATGCCACTCGCAATGCCTTGCTTCTGTGTGAGATCGCAGGGCATCCAAGTTTGCCTGTGGCGGAGGGAAGCCCTGAGCCTTTGAAGGGTGGAAGGCCACGTGTTGCTGACTTTATACATGGTTCTGATGGATTGGGGAACATATTTCTACCTCCTCCAGAAAGAAAGCAAATTGAAAAGAGTGCTTCTGAATTTTTAGTTGATATGGTCTCCGAATATCCTGGAGAAGTATCTATACTTGCCCTTGGTCCCTTGACAAACTTAGCACTGGCAATCAAAAGAGATTCTTCCTTTGCGAAAAAGGTCAAGAGGGTGGTCGTACTTGGTGGTGCTTTCTTTGCACTGGGAAATGTAAATCCTGCTGCGGAAGCAAATATTTATGGAGACCCGGAAGCAGCAGATGTTGTGTTTACATCTGGGGCAAACATTACTGTTGTTGGAATAAATATTACAACCCAAGTTCAATTTACAGATGATGACCTCCTTCAACTGCGTCAATCTAAAGGAAAGCATGCTCAGCTGATAAGCGACACGTGCAAATTCTACAGAGATTGGCATGTTAAATCTGATGGTGTTCATGGGATTTTCCTTCATGACCCGGTCAGTTTTGTAGCACTAGTCCGTCCTGATCTCTTTACATACAAGAAGGGGGTTGTGAGGGTTGAAACTCAGGGCATCTGTGTTGGGCACACACTGATGGATCAAGGACTTAAAAATTGGAATTCAAGCAATCCATGGACAGGCTATTCCCCTGTTGAAGTTGCTTGGACAGTGAAAGTGGATGAAGTCCTCGATTATATAAGAAGTCGATTGATAAAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006152 GO:0006213 GO:0006218 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008477 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019439 GO:0034641 GO:0034655 GO:0034656 GO:0042278 GO:0042454 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0045437 GO:0046108 GO:0046131 GO:0046133 GO:0046135 GO:0046483 GO:0046700 GO:0047622 GO:0047724 GO:0050263 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:0072527 GO:0072529 GO:0072585 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00760 map00240 map00760

Pfam Domains

Protein Families

IU_nuc_hydro

Protein Analysis

339

Amino Acids

36.81

Weight (kDa)

5.22

Isoelectric Point (pI)

30.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36310
fragaria_vesca	FvH4_6g18360 FvH4_6g18360 FvH4_6g18360
malus_domestica	MD12G1022900.v1.1 MD14G1019900.v1.1
prunus_persica	Prupe.7G113700_v2.0.a1 Prupe.7G113700_v2.0.a1 Prupe.7G113700_v2.0.a1 Prupe.7G113700_v2.0.a1
pyrus_communis	pycom12g02140 pycom14g01950
rosa_chinensis	RchiOBHm_Chr3g0472851
rosa_laevigata	RLG00000024051
rosa_roxburghii	Rroxscaffold_6G00408560
rosa_rugosa	Rorug03G0128100
rosa_samantha	Rh3AG180800 Rh3BG207000 Rh3CG204200 Rh3DG168900
rosa_wichuraiana	Rw3G016220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	254, 557
AclWI	GGATC	1 cut(s)	900
AcsI	RAATTY	3 cut(s)	383, 731, 913
AcuI	CTGAAG	1 cut(s)	83
AcvI	CACGTG	2 cut(s)	293, 726
AdeI	CACNNNGTG	2 cut(s)	17, 19
AfaI	GTAC	1 cut(s)	513
AfiI	CCNNNNNNNGG	2 cut(s)	278, 932
AflIII	ACRYGT	2 cut(s)	292, 723
AgsI	TTSAA	8 cut(s)	134, 277, 368, 656, 680, 857, 918, 950
AhlI	ACTAGT	1 cut(s)	808
AjnI	CCWGG	2 cut(s)	94, 412
AluBI	AGCT	4 cut(s)	61, 76, 116, 712
AluI	AGCT	4 cut(s)	61, 76, 116, 712
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	3 cut(s)	33, 406, 570
AlwI	GGATC	1 cut(s)	900
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	2 cut(s)	554, 587
ApoI	RAATTY	3 cut(s)	383, 731, 913
AspS9I	GGNCC	1 cut(s)	440
AsuC2I	CCSGG	2 cut(s)	581, 791
AvaII	GGWCC	1 cut(s)	440
BaeGI	GKGCMC	1 cut(s)	882
BarI	GAAGNNNNNNTAC	2 cut(s)	411, 443
BbrPI	CACGTG	2 cut(s)	293, 726
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	541, 599
BccI	CCATC	4 cut(s)	23, 314, 755, 883
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	2 cut(s)	96, 414
BcnI	CCSGG	2 cut(s)	581, 791
BcoDI	GTCTC	3 cut(s)	33, 406, 570
BcuI	ACTAGT	1 cut(s)	808
BfaI	CTAG	1 cut(s)	809
BfmI	CTRYAG	1 cut(s)	736
BisI	GCNGC	2 cut(s)	555, 588
BlpI	GCTNAGC	1 cut(s)	708
BlsI	GCNGC	2 cut(s)	556, 589
Bme1390I	CCNGG	4 cut(s)	96, 414, 581, 791
Bme18I	GGWCC	1 cut(s)	440
BmgT120I	GGNCC	1 cut(s)	440
BmiI	GGNNCC	1 cut(s)	442
BmrFI	CCNGG	4 cut(s)	96, 414, 581, 791
BmrI	ACTGGG	1 cut(s)	545
BmsI	GCATC	3 cut(s)	184, 244, 876
BmuI	ACTGGG	1 cut(s)	545
BpmI	CTGGAG	3 cut(s)	123, 333, 435
Bpu10I	CCTNAGC	1 cut(s)	267
Bpu1102I	GCTNAGC	1 cut(s)	708
BpuMI	CCSGG	2 cut(s)	581, 791
BsaAI	YACGTR	2 cut(s)	293, 726
BsaI	GGTCTC	2 cut(s)	406, 570
BsaJI	CCNNGG	3 cut(s)	94, 436, 926
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 932
Bse1I	ACTGG	2 cut(s)	465, 540
Bse3DI	GCAATG	1 cut(s)	211
BseBI	CCWGG	2 cut(s)	96, 414
BseDI	CCNNGG	3 cut(s)	94, 436, 926
BseGI	GGATG	2 cut(s)	235, 979
BseLI	CCNNNNNNNGG	2 cut(s)	278, 932
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	3 cut(s)	258, 722, 875
BseNI	ACTGG	2 cut(s)	465, 540
BseRI	GAGGAG	1 cut(s)	336
BseSI	GKGCMC	1 cut(s)	882
BseXI	GCAGC	2 cut(s)	541, 599
BshFI	GGCC	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	2 cut(s)	581, 791
BslFI	GGGAC	1 cut(s)	426
BslI	CCNNNNNNNGG	2 cut(s)	278, 932
BsmAI	GTCTC	3 cut(s)	33, 406, 570
BsmBI	CGTCTC	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	426
BsnI	GGCC	1 cut(s)	289
Bso31I	GGTCTC	2 cut(s)	406, 570
Bsp1286I	GDGCHC	2 cut(s)	27, 882
Bsp143I	GATC	3 cut(s)	225, 820, 892
Bsp1720I	GCTNAGC	1 cut(s)	708
Bsp19I	CCATGG	1 cut(s)	926
BspACI	CCGC	2 cut(s)	254, 557
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	3 cut(s)	259, 721, 874
BspHI	TCATGA	2 cut(s)	784, 1013
BspLI	GGNNCC	1 cut(s)	442
BspPI	GGATC	1 cut(s)	900
BspTNI	GGTCTC	2 cut(s)	406, 570
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	465, 540
BssECI	CCNNGG	3 cut(s)	94, 436, 926
BssMI	GATC	3 cut(s)	225, 820, 892
BssT1I	CCWWGG	2 cut(s)	436, 926
Bst2UI	CCWGG	2 cut(s)	96, 414
Bst4CI	ACNGT	3 cut(s)	17, 625, 964
BstBAI	YACGTR	2 cut(s)	293, 726
BstC8I	GCNNGC	2 cut(s)	59, 705
BstDEI	CTNAG	4 cut(s)	267, 454, 708, 861
BstDSI	CCRYGG	1 cut(s)	926
BstF5I	GGATG	2 cut(s)	235, 979
BstKTI	GATC	3 cut(s)	228, 823, 895
BstMAI	GTCTC	3 cut(s)	33, 406, 570
BstMBI	GATC	3 cut(s)	225, 820, 892
BstMWI	GCNNNNNNNGC	5 cut(s)	73, 530, 560, 709, 726
BstNI	CCWGG	2 cut(s)	96, 414
BstNSI	RCATGY	2 cut(s)	707, 752
BstSCI	CCNGG	4 cut(s)	94, 412, 579, 789
BstSFI	CTRYAG	1 cut(s)	736
BstSLI	GKGCMC	1 cut(s)	882
BstV1I	GCAGC	2 cut(s)	541, 599
BsuRI	GGCC	1 cut(s)	289
BtgI	CCRYGG	1 cut(s)	926
BtsCI	GGATG	2 cut(s)	235, 979
BtsIMutI	CAGTG	4 cut(s)	458, 533, 884, 969
Cac8I	GCNNGC	2 cut(s)	59, 705
CciI	TCATGA	2 cut(s)	784, 1013
Cfr13I	GGNCC	1 cut(s)	440
CseI	GACGC	1 cut(s)	674
Csp6I	GTAC	1 cut(s)	512
CviAII	CATG	7 cut(s)	311, 704, 749, 770, 785, 927, 1014
CviJI	RGCY	8 cut(s)	61, 76, 116, 264, 271, 289, 712, 936
CviKI_1	RGCY	8 cut(s)	61, 76, 116, 264, 271, 289, 712, 936
CviQI	GTAC	1 cut(s)	512
DdeI	CTNAG	4 cut(s)	267, 454, 708, 861
DpnI	GATC	3 cut(s)	227, 822, 894
DpnII	GATC	3 cut(s)	225, 820, 892
DraIII	CACNNNGTG	2 cut(s)	17, 19
EciI	GGCGGA	1 cut(s)	269
Eco130I	CCWWGG	2 cut(s)	436, 926
Eco31I	GGTCTC	2 cut(s)	406, 570
Eco47I	GGWCC	1 cut(s)	440
Eco57I	CTGAAG	1 cut(s)	83
Eco72I	CACGTG	2 cut(s)	293, 726
EcoRI	GAATTC	1 cut(s)	913
EcoRII	CCWGG	2 cut(s)	94, 412
EcoT14I	CCWWGG	2 cut(s)	436, 926
ErhI	CCWWGG	2 cut(s)	436, 926
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	7 cut(s)	314, 707, 752, 773, 788, 930, 1017
FalI	AAGNNNNNCTT	2 cut(s)	463, 495
FaqI	GGGAC	1 cut(s)	426
FatI	CATG	7 cut(s)	310, 703, 748, 769, 784, 926, 1013
Fnu4HI	GCNGC	2 cut(s)	555, 588
FokI	GGATG	2 cut(s)	222, 986
Fsp4HI	GCNGC	2 cut(s)	555, 588
FspBI	CTAG	1 cut(s)	809
GluI	GCNGC	2 cut(s)	555, 588
GsuI	CTGGAG	3 cut(s)	123, 333, 435
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	2 cut(s)	581, 791
HgaI	GACGC	1 cut(s)	674
Hin1II	CATG	7 cut(s)	314, 707, 752, 773, 788, 930, 1017
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HinfI	GANTC	1 cut(s)	476
HpaII	CCGG	2 cut(s)	581, 791
Hpy166II	GTNNAC	2 cut(s)	162, 603
Hpy188I	TCNGA	4 cut(s)	319, 382, 406, 760
Hpy188III	TCNNGA	6 cut(s)	140, 350, 499, 785, 818, 1014
Hpy8I	GTNNAC	2 cut(s)	162, 603
HpyAV	CCTTC	5 cut(s)	271, 279, 686, 791, 832
HpyCH4III	ACNGT	3 cut(s)	17, 625, 964
HpyCH4IV	ACGT	2 cut(s)	292, 725
HpyCH4V	TGCA	2 cut(s)	533, 729
HpyF10VI	GCNNNNNNNGC	5 cut(s)	73, 530, 560, 709, 726
HpyF3I	CTNAG	4 cut(s)	267, 454, 708, 861
HpySE526I	ACGT	2 cut(s)	292, 725
Hsp92II	CATG	7 cut(s)	314, 707, 752, 773, 788, 930, 1017
Kzo9I	GATC	3 cut(s)	225, 820, 892
Lsp1109I	GCAGC	2 cut(s)	541, 599
LweI	GCATC	3 cut(s)	184, 244, 876
MaeI	CTAG	1 cut(s)	809
MaeII	ACGT	2 cut(s)	292, 725
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	3 cut(s)	227, 822, 894
MboI	GATC	3 cut(s)	225, 820, 892
MboII	GAAGA	2 cut(s)	203, 471
MhlI	GDGCHC	2 cut(s)	27, 882
MluCI	AATT	7 cut(s)	99, 363, 383, 656, 731, 907, 913
MmeI	TCCRAC	2 cut(s)	126, 610
MnlI	CCTC	7 cut(s)	250, 354, 357, 495, 683, 843, 992
MseI	TTAA	3 cut(s)	122, 753, 903
MslI	CAYNNNNRTG	1 cut(s)	887
MspA1I	CMGCKG	2 cut(s)	61, 712
MspI	CCGG	2 cut(s)	581, 791
MspR9I	CCNGG	4 cut(s)	96, 414, 581, 791
MvaI	CCWGG	2 cut(s)	96, 414
MwoI	GCNNNNNNNGC	5 cut(s)	73, 530, 560, 709, 726
NciI	CCSGG	2 cut(s)	581, 791
NcoI	CCATGG	1 cut(s)	926
NdeII	GATC	3 cut(s)	225, 820, 892
NlaIII	CATG	7 cut(s)	314, 707, 752, 773, 788, 930, 1017
NlaIV	GGNNCC	1 cut(s)	442
NspI	RCATGY	2 cut(s)	707, 752
PaeI	GCATGC	1 cut(s)	707
PagI	TCATGA	2 cut(s)	784, 1013
PfeI	GAWTC	1 cut(s)	476
PflFI	GACNNNGTC	1 cut(s)	791
PfoI	TCCNGGA	1 cut(s)	412
PkrI	GCNGC	2 cut(s)	556, 589
PmaCI	CACGTG	2 cut(s)	293, 726
PmlI	CACGTG	2 cut(s)	293, 726
Ppu21I	YACGTR	2 cut(s)	293, 726
Psp6I	CCWGG	2 cut(s)	94, 412
PspCI	CACGTG	2 cut(s)	293, 726
PspGI	CCWGG	2 cut(s)	94, 412
PspN4I	GGNNCC	1 cut(s)	442
PspPI	GGNCC	1 cut(s)	440
PsyI	GACNNNGTC	1 cut(s)	791
PvuII	CAGCTG	2 cut(s)	61, 712
RsaI	GTAC	1 cut(s)	513
RsaNI	GTAC	1 cut(s)	512
RseI	CAYNNNNRTG	1 cut(s)	887
SaqAI	TTAA	3 cut(s)	122, 753, 903
SatI	GCNGC	2 cut(s)	555, 588
Sau3AI	GATC	3 cut(s)	225, 820, 892
Sau96I	GGNCC	1 cut(s)	440
ScrFI	CCNGG	4 cut(s)	96, 414, 581, 791
SduI	GDGCHC	2 cut(s)	27, 882
SetI	ASST	9 cut(s)	63, 78, 118, 295, 346, 498, 675, 714, 728
SfaNI	GCATC	3 cut(s)	184, 244, 876
SfcI	CTRYAG	1 cut(s)	736
SinI	GGWCC	1 cut(s)	440
SmiMI	CAYNNNNRTG	1 cut(s)	887
SpeI	ACTAGT	1 cut(s)	808
SphI	GCATGC	1 cut(s)	707
Sse9I	AATT	7 cut(s)	99, 363, 383, 656, 731, 907, 913
SsiI	CCGC	2 cut(s)	254, 557
SspI	AATATT	3 cut(s)	171, 568, 640
SspMI	CTAG	1 cut(s)	809
StyD4I	CCNGG	4 cut(s)	94, 412, 579, 789
StyI	CCWWGG	2 cut(s)	436, 926
TaaI	ACNGT	3 cut(s)	17, 625, 964
TaiI	ACGT	2 cut(s)	295, 728
TaqI	TCGA	3 cut(s)	27, 984, 1000
TasI	AATT	7 cut(s)	99, 363, 383, 656, 731, 907, 913
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	3 cut(s)	122, 753, 903
Tru9I	TTAA	3 cut(s)	122, 753, 903
TscAI	CASTG	4 cut(s)	465, 540, 891, 969
TseI	GCWGC	2 cut(s)	554, 587
TspDTI	ATGAA	3 cut(s)	758, 773, 990
TspGWI	ACGGA	1 cut(s)	803
TspRI	CASTG	4 cut(s)	465, 540, 891, 969
Tth111I	GACNNNGTC	1 cut(s)	791
VpaK11BI	GGWCC	1 cut(s)	440
XapI	RAATTY	3 cut(s)	383, 731, 913
XceI	RCATGY	2 cut(s)	707, 752
XspI	CTAG	1 cut(s)	809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.