Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0009889

Physical Location & Seq

Genomic Coordinates Forward (+)

14732107 .. 14736284

Gene Structure 4178 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG168900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGATTATGACTTTGGACTAAATGATAGATGTTTTGGTTACTGGATATATGCTACACCAGCGTGCACTGTCCTTTTTCTTTTTCCTATTAAGAGGTGTAATGACTGTCTTTTCAATTGGCAATCAGCAGATGACACTATGGCAATCTTAATGGCATTTCAAACTCCGGAGTTGGAAATATTGGGCTTGACAACAATATTTGGTAATGTTACCACTGAAGATGCCACTCGCAATGCCTTGCTTCTCTGTGAGATCGCAGGGCAGCCAGGTGTGCCTGTGGCAGAGGGAAGCCCTGAGCCTCTGAAGGGTGGAAGGCCACGTGTTGCTGACTTTATCCACGGTTCCGATGGATTGGGGAACATATTTATACCTCCTCCAGAAACAAAGAAAATTGAGAAGACTGCTGCTGAATTTCTTGTTGATACAGTGTCTCAATATCCTGATGAAGTATCAATACTTGCCCTTGGCCCCTTGACAAACTTGGCATTGGCAATCAAAAGGGATTCTTCCTTTGCAAGAAAGGTGAAGAGGGTGGTTGTACTTGGCGGTGCTTTCTTTGCACTGGGAAATGTAAATCCTGCTGCTGAAGCAAATATTTATGGAGACCCGGAAGCAGCAGATGTTGTGTTTACATCTGGGGCTAACATTACTGTTGTTGGAATAAATATTACGACCCAACTCAAGTTTACAGATTCTGACCTCCTCCAACTGCGGGAATCAAAAGGAAAACATGCTCAATTCATAAGTGACACTTGTAAATTCTACAGAGATTGGCATGTGAAATCTGATGGTGTTTATGGGATTTTCCTCCATGACCCTGTCAGTTTTGTAGCAGTAGTCCGTCCTGATCTCTTTACATACAAGAAGGGGGTTGTGAGGGTTGAGACTCAGGGCATCTGTGTTGGGCACACACTGATGGATCAAGGACTAAAGAATTGGAATTCAAACAATCCATGGACAGGCTATTCCCCTGTTGAAGTTGCTTGGACAGTGAACGTGGATGAAGTCCTTGATTATATAAGAGATCGACTGATGACATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006152 GO:0006213 GO:0006218 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008477 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019439 GO:0034641 GO:0034655 GO:0034656 GO:0042278 GO:0042454 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0045437 GO:0046108 GO:0046131 GO:0046133 GO:0046135 GO:0046483 GO:0046700 GO:0047622 GO:0047724 GO:0050263 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:0072527 GO:0072529 GO:0072585 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00760 map00240 map00760

Pfam Domains

Protein Families

IU_nuc_hydro

Protein Analysis

347

Amino Acids

38.22

Weight (kDa)

4.97

Isoelectric Point (pI)

32.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IU_nuc_hydro	PF01156	43 - 337	4e-86	Inosine-uridine preferring nucleoside hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36310
fragaria_vesca	FvH4_6g18360 FvH4_6g18360 FvH4_6g18360
malus_domestica	MD12G1022900.v1.1 MD14G1019900.v1.1
prunus_persica	Prupe.7G113700_v2.0.a1 Prupe.7G113700_v2.0.a1 Prupe.7G113700_v2.0.a1 Prupe.7G113700_v2.0.a1
pyrus_communis	pycom12g02140 pycom14g01950
rosa_chinensis	RchiOBHm_Chr3g0472851
rosa_laevigata	RLG00000024051
rosa_roxburghii	Rroxscaffold_6G00408560
rosa_rugosa	Rorug03G0128100
rosa_samantha	Rh3AG180800 Rh3BG207000 Rh3CG204200 Rh3DG168900
rosa_wichuraiana	Rw3G016220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	166
AciI	CCGC	2 cut(s)	546, 712
AclWI	GGATC	1 cut(s)	927
AcsI	RAATTY	3 cut(s)	410, 758, 940
AcuI	CTGAAG	3 cut(s)	237, 323, 606
AcvI	CACGTG	1 cut(s)	320
AfaI	GTAC	1 cut(s)	540
AfiI	CCNNNNNNNGG	3 cut(s)	305, 712, 959
AflIII	ACRYGT	1 cut(s)	319
AgsI	TTSAA	4 cut(s)	115, 161, 945, 977
AjnI	CCWGG	1 cut(s)	265
AleI	CACNNNNGTG	1 cut(s)	61
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	3 cut(s)	435, 597, 878
Alw44I	GTGCAC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	927
AlwNI	CAGNNNCTG	1 cut(s)	695
Aor13HI	TCCGGA	1 cut(s)	166
AoxI	GGCC	2 cut(s)	314, 466
ApaLI	GTGCAC	1 cut(s)	64
ApeKI	GCWGC	4 cut(s)	262, 404, 581, 614
ApoI	RAATTY	3 cut(s)	410, 758, 940
AspS9I	GGNCC	1 cut(s)	467
AsuC2I	CCSGG	1 cut(s)	608
AsuHPI	GGTGA	1 cut(s)	535
BaeGI	GKGCMC	2 cut(s)	68, 909
BarI	GAAGNNNNNNTAC	2 cut(s)	438, 470
BbrPI	CACGTG	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	4 cut(s)	274, 391, 568, 626
BccI	CCATC	3 cut(s)	341, 782, 910
BciT130I	CCWGG	1 cut(s)	267
BcnI	CCSGG	1 cut(s)	608
BcoDI	GTCTC	3 cut(s)	435, 597, 878
BfmI	CTRYAG	1 cut(s)	763
BisI	GCNGC	4 cut(s)	263, 405, 582, 615
BlsI	GCNGC	4 cut(s)	264, 406, 583, 616
Bme1390I	CCNGG	2 cut(s)	267, 608
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	2 cut(s)	343, 469
BmrFI	CCNGG	2 cut(s)	267, 608
BmrI	ACTGGG	1 cut(s)	572
BmsI	GCATC	2 cut(s)	211, 903
BmuI	ACTGGG	1 cut(s)	572
BpiI	GAAGAC	1 cut(s)	404
BpmI	CTGGAG	1 cut(s)	360
Bpu10I	CCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	665
BpuMI	CCSGG	1 cut(s)	608
BsaAI	YACGTR	1 cut(s)	320
BsaI	GGTCTC	1 cut(s)	597
BsaJI	CCNNGG	3 cut(s)	337, 463, 953
BsaWI	WCCGGW	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	3 cut(s)	305, 712, 959
Bse1I	ACTGG	2 cut(s)	47, 567
Bse3DI	GCAATG	1 cut(s)	238
BseAI	TCCGGA	1 cut(s)	166
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	3 cut(s)	337, 463, 953
BseGI	GGATG	1 cut(s)	1006
BseLI	CCNNNNNNNGG	3 cut(s)	305, 712, 959
BseMI	GCAATG	1 cut(s)	238
BseMII	CTCAG	2 cut(s)	285, 902
BseNI	ACTGG	2 cut(s)	47, 567
BseRI	GAGGAG	2 cut(s)	363, 692
BseSI	GKGCMC	2 cut(s)	68, 909
BseXI	GCAGC	4 cut(s)	274, 391, 568, 626
BshFI	GGCC	2 cut(s)	316, 468
BsiHKAI	GWGCWC	1 cut(s)	68
BsiSI	CCGG	2 cut(s)	167, 608
BslI	CCNNNNNNNGG	3 cut(s)	305, 712, 959
BsmAI	GTCTC	3 cut(s)	435, 597, 878
BsnI	GGCC	2 cut(s)	316, 468
Bso31I	GGTCTC	1 cut(s)	597
Bsp1286I	GDGCHC	2 cut(s)	68, 909
Bsp13I	TCCGGA	1 cut(s)	166
Bsp143I	GATC	4 cut(s)	252, 847, 919, 1024
Bsp19I	CCATGG	1 cut(s)	953
BspACI	CCGC	2 cut(s)	546, 712
BspANI	GGCC	2 cut(s)	316, 468
BspCNI	CTCAG	2 cut(s)	286, 901
BspEI	TCCGGA	1 cut(s)	166
BspLI	GGNNCC	2 cut(s)	343, 469
BspPI	GGATC	1 cut(s)	927
BspTNI	GGTCTC	1 cut(s)	597
BsrDI	GCAATG	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	47, 567
BssECI	CCNNGG	3 cut(s)	337, 463, 953
BssMI	GATC	4 cut(s)	252, 847, 919, 1024
BssT1I	CCWWGG	2 cut(s)	463, 953
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	6 cut(s)	70, 107, 341, 427, 652, 991
Bst6I	CTCTTC	1 cut(s)	521
BstBAI	YACGTR	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	2 cut(s)	294, 888
BstDSI	CCRYGG	2 cut(s)	337, 953
BstF5I	GGATG	1 cut(s)	1006
BstKTI	GATC	4 cut(s)	255, 850, 922, 1027
BstMAI	GTCTC	3 cut(s)	435, 597, 878
BstMBI	GATC	4 cut(s)	252, 847, 919, 1024
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 271, 557, 587
BstNI	CCWGG	1 cut(s)	267
BstNSI	RCATGY	2 cut(s)	734, 779
BstSCI	CCNGG	2 cut(s)	265, 606
BstSFI	CTRYAG	1 cut(s)	763
BstSLI	GKGCMC	2 cut(s)	68, 909
BstV1I	GCAGC	4 cut(s)	274, 391, 568, 626
BstV2I	GAAGAC	1 cut(s)	404
BsuRI	GGCC	2 cut(s)	316, 468
BtgI	CCRYGG	2 cut(s)	337, 953
BtsCI	GGATG	1 cut(s)	1006
BtsIMutI	CAGTG	6 cut(s)	66, 213, 432, 560, 911, 996
Cac8I	GCNNGC	1 cut(s)	64
CaiI	CAGNNNCTG	1 cut(s)	695
Cfr13I	GGNCC	1 cut(s)	467
Csp6I	GTAC	1 cut(s)	539
CviAII	CATG	4 cut(s)	731, 776, 812, 954
CviJI	RGCY	8 cut(s)	186, 265, 291, 298, 316, 468, 641, 963
CviKI_1	RGCY	8 cut(s)	186, 265, 291, 298, 316, 468, 641, 963
CviQI	GTAC	1 cut(s)	539
DdeI	CTNAG	2 cut(s)	294, 888
DpnI	GATC	4 cut(s)	254, 849, 921, 1026
DpnII	GATC	4 cut(s)	252, 847, 919, 1024
Eam1104I	CTCTTC	1 cut(s)	521
EarI	CTCTTC	1 cut(s)	521
Eco130I	CCWWGG	2 cut(s)	463, 953
Eco31I	GGTCTC	1 cut(s)	597
Eco57I	CTGAAG	3 cut(s)	237, 323, 606
Eco72I	CACGTG	1 cut(s)	320
EcoRI	GAATTC	1 cut(s)	940
EcoRII	CCWGG	1 cut(s)	265
EcoT14I	CCWWGG	2 cut(s)	463, 953
ErhI	CCWWGG	2 cut(s)	463, 953
FaeI	CATG	4 cut(s)	734, 779, 815, 957
FalI	AAGNNNNNCTT	4 cut(s)	490, 522, 736, 768
FatI	CATG	4 cut(s)	730, 775, 811, 953
FauI	CCCGC	1 cut(s)	705
Fnu4HI	GCNGC	4 cut(s)	263, 405, 582, 615
FokI	GGATG	1 cut(s)	1013
Fsp4HI	GCNGC	4 cut(s)	263, 405, 582, 615
GluI	GCNGC	4 cut(s)	263, 405, 582, 615
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	2 cut(s)	316, 468
HapII	CCGG	2 cut(s)	167, 608
Hin1II	CATG	4 cut(s)	734, 779, 815, 957
HinfI	GANTC	4 cut(s)	503, 692, 716, 886
HpaII	CCGG	2 cut(s)	167, 608
HphI	GGTGA	1 cut(s)	535
Hpy166II	GTNNAC	4 cut(s)	66, 630, 687, 994
Hpy188I	TCNGA	4 cut(s)	303, 346, 697, 787
Hpy188III	TCNNGA	5 cut(s)	167, 377, 440, 845, 1041
Hpy8I	GTNNAC	4 cut(s)	66, 630, 687, 994
HpyAV	CCTTC	3 cut(s)	298, 306, 859
HpyCH4III	ACNGT	6 cut(s)	70, 107, 341, 427, 652, 991
HpyCH4IV	ACGT	2 cut(s)	319, 996
HpyCH4V	TGCA	3 cut(s)	66, 515, 560
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 271, 557, 587
HpyF3I	CTNAG	2 cut(s)	294, 888
HpySE526I	ACGT	2 cut(s)	319, 996
Hsp92II	CATG	4 cut(s)	734, 779, 815, 957
Kpn2I	TCCGGA	1 cut(s)	166
Kzo9I	GATC	4 cut(s)	252, 847, 919, 1024
Lsp1109I	GCAGC	4 cut(s)	274, 391, 568, 626
LweI	GCATC	2 cut(s)	211, 903
MaeII	ACGT	2 cut(s)	319, 996
MaeIII	GTNAC	3 cut(s)	38, 208, 746
MalI	GATC	4 cut(s)	254, 849, 921, 1026
MboI	GATC	4 cut(s)	252, 847, 919, 1024
MboII	GAAGA	4 cut(s)	230, 409, 498, 538
MfeI	CAATTG	1 cut(s)	115
MhlI	GDGCHC	2 cut(s)	68, 909
MluCI	AATT	7 cut(s)	115, 390, 410, 737, 758, 934, 940
MlyI	GAGTC	1 cut(s)	880
MmeI	TCCRAC	3 cut(s)	153, 637, 730
MroI	TCCGGA	1 cut(s)	166
MseI	TTAA	2 cut(s)	90, 149
MslI	CAYNNNNRTG	2 cut(s)	61, 914
MspI	CCGG	2 cut(s)	167, 608
MspR9I	CCNGG	2 cut(s)	267, 608
MunI	CAATTG	1 cut(s)	115
MvaI	CCWGG	1 cut(s)	267
MwoI	GCNNNNNNNGC	4 cut(s)	59, 271, 557, 587
NciI	CCSGG	1 cut(s)	608
NcoI	CCATGG	1 cut(s)	953
NdeII	GATC	4 cut(s)	252, 847, 919, 1024
NlaIII	CATG	4 cut(s)	734, 779, 815, 957
NlaIV	GGNNCC	2 cut(s)	343, 469
NmuCI	GTSAC	1 cut(s)	746
NspI	RCATGY	2 cut(s)	734, 779
OliI	CACNNNNGTG	1 cut(s)	61
PfeI	GAWTC	3 cut(s)	503, 692, 716
PflFI	GACNNNGTC	1 cut(s)	818
PkrI	GCNGC	4 cut(s)	264, 406, 583, 616
PleI	GAGTC	1 cut(s)	880
PmaCI	CACGTG	1 cut(s)	320
PmlI	CACGTG	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	880
Ppu21I	YACGTR	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	265
PspCI	CACGTG	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	2 cut(s)	343, 469
PspPI	GGNCC	1 cut(s)	467
PstNI	CAGNNNCTG	1 cut(s)	695
PsyI	GACNNNGTC	1 cut(s)	818
RsaI	GTAC	1 cut(s)	540
RsaNI	GTAC	1 cut(s)	539
RseI	CAYNNNNRTG	2 cut(s)	61, 914
SaqAI	TTAA	2 cut(s)	90, 149
SatI	GCNGC	4 cut(s)	263, 405, 582, 615
Sau3AI	GATC	4 cut(s)	252, 847, 919, 1024
Sau96I	GGNCC	1 cut(s)	467
SchI	GAGTC	1 cut(s)	880
ScrFI	CCNGG	2 cut(s)	267, 608
SduI	GDGCHC	2 cut(s)	68, 909
SetI	ASST	7 cut(s)	98, 271, 322, 373, 525, 702, 999
SfaNI	GCATC	2 cut(s)	211, 903
SfcI	CTRYAG	1 cut(s)	763
SmiMI	CAYNNNNRTG	2 cut(s)	61, 914
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
Sse9I	AATT	7 cut(s)	115, 390, 410, 737, 758, 934, 940
SsiI	CCGC	2 cut(s)	546, 712
SspI	AATATT	4 cut(s)	180, 198, 595, 667
StyD4I	CCNGG	2 cut(s)	265, 606
StyI	CCWWGG	2 cut(s)	463, 953
TaaI	ACNGT	6 cut(s)	70, 107, 341, 427, 652, 991
TaiI	ACGT	2 cut(s)	322, 999
TaqI	TCGA	1 cut(s)	1027
TasI	AATT	7 cut(s)	115, 390, 410, 737, 758, 934, 940
TatI	WGTACW	1 cut(s)	538
TfiI	GAWTC	3 cut(s)	503, 692, 716
Tru1I	TTAA	2 cut(s)	90, 149
Tru9I	TTAA	2 cut(s)	90, 149
TscAI	CASTG	6 cut(s)	73, 220, 432, 567, 918, 996
TseFI	GTSAC	1 cut(s)	746
TseI	GCWGC	4 cut(s)	262, 404, 581, 614
Tsp45I	GTSAC	1 cut(s)	746
TspDTI	ATGAA	3 cut(s)	459, 730, 1017
TspGWI	ACGGA	1 cut(s)	830
TspRI	CASTG	6 cut(s)	73, 220, 432, 567, 918, 996
Tth111I	GACNNNGTC	1 cut(s)	818
VneI	GTGCAC	1 cut(s)	64
XapI	RAATTY	3 cut(s)	410, 758, 940
XceI	RCATGY	2 cut(s)	734, 779
XcmI	CCANNNNNNNNNTGG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.