Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009889

Physical Location & Seq

Genomic Coordinates Forward (+)

31249527 .. 31252956

Gene Structure 3430 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024051

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGGGACTGTGATGACGAATACCGACGGTGCGGTGGTGGTGGACGGCGGAAGCGGCGGCGTTTTGGGGTGCAATCTGAAGCGTGAGAAGCTTATAATCGATACTGACCCTGGTATCGATGACACTATGGCAATCTTAATGGCATTTCAAACTCCGGAGTTGGAAATATTGGGCTTGACAACAATATTCGGTAATGTTACCACTGAAGATGCCACTCGCAATGCCTTGCTTCTGTGTGAGATCGCAGGGCAGCCAGGTGTGCCTGTGGCGGAGGGAAGCCCTGAGCCTCTGAAGGGTGGAAGGCCACGTGTTGCTGACTTTGTCCACGGTTCTGATGGATTGGGCAACATACTTATACCTCCTCCAGAAACAAAGAAAATTGAGAAGACTGCTGCTGAATTTCTAGTTGATACGGTGTCCCAATATCCTGGTGAAGTATCAATACTTGCCCTTGGCCCCTTGACAAACTTGGCATTGGCAATCAAAAGGGATTCTTCCTTTGCAAGAAAGGTGAAGAGGGTGGTTGTACTTGGCGGTGCTTTCTTTGCACTGGGAAATGTAAATCCTGCTGCTGAAGCAAATATTTATGGAGACCCGGAAGCAGCAGATGTTGTATTTACATCTGGGGCTAACATTACTGTTGTTGGAATAAATATTACGACCCAGGTCAAGTTTACAGATTCTGACCTCCTCCAACTGCGAGAATCAAAAGGAAAACATGCTCAATTCATAAGTGACACTTGTAAATTCTACAGAGATTGGCACGTGAAATCTGATGGTGTTTATGGGATTTTCCTTCATGACCCTGTCAGTTTTGTCGCATTAGTCCGTCCTGATCTCTTTACATACAAGAAGGGGGTTGTGAGGGTTGAGACTCAGGGCATCTGTGTTGGGCACACGCTGATGGATCAAGGACTAAAGAATTGGAATTCAAGCAATCCATGGACAGGCTATTCCCCTGTTGAAGTTGCTTGGACAGTGAACGTGGATGGAGTACTTGATTATATAAGAGATCGACTGATGACATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006152 GO:0006213 GO:0006218 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008477 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019439 GO:0034641 GO:0034655 GO:0034656 GO:0042278 GO:0042454 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0045437 GO:0046108 GO:0046131 GO:0046133 GO:0046135 GO:0046483 GO:0046700 GO:0047622 GO:0047724 GO:0050263 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:0072527 GO:0072529 GO:0072585 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00760 map00240 map00760

Pfam Domains

Protein Families

IU_nuc_hydro

Protein Analysis

344

Amino Acids

36.8

Weight (kDa)

5.04

Isoelectric Point (pI)

26.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IU_nuc_hydro	PF01156	31 - 333	7.2e-93	Inosine-uridine preferring nucleoside hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36310
fragaria_vesca	FvH4_6g18360 FvH4_6g18360 FvH4_6g18360
malus_domestica	MD12G1022900.v1.1 MD14G1019900.v1.1
prunus_persica	Prupe.7G113700_v2.0.a1 Prupe.7G113700_v2.0.a1 Prupe.7G113700_v2.0.a1 Prupe.7G113700_v2.0.a1
pyrus_communis	pycom12g02140 pycom14g01950
rosa_chinensis	RchiOBHm_Chr3g0472851
rosa_laevigata	RLG00000024051
rosa_roxburghii	Rroxscaffold_6G00408560
rosa_rugosa	Rorug03G0128100
rosa_samantha	Rh3AG180800 Rh3BG207000 Rh3CG204200 Rh3DG168900
rosa_wichuraiana	Rw3G016220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	95
AccIII	TCCGGA	1 cut(s)	154
AciI	CCGC	6 cut(s)	32, 48, 54, 57, 269, 534
AclWI	GGATC	1 cut(s)	915
AcsI	RAATTY	3 cut(s)	398, 746, 928
AcuI	CTGAAG	4 cut(s)	98, 225, 311, 594
AcvI	CACGTG	2 cut(s)	308, 766
AfaI	GTAC	2 cut(s)	528, 996
AfiI	CCNNNNNNNGG	2 cut(s)	293, 947
AflIII	ACRYGT	1 cut(s)	307
AgsI	TTSAA	3 cut(s)	149, 933, 965
AjnI	CCWGG	4 cut(s)	109, 253, 427, 663
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Alw26I	GTCTC	2 cut(s)	585, 866
AlwI	GGATC	1 cut(s)	915
AlwNI	CAGNNNCTG	1 cut(s)	683
Aor13HI	TCCGGA	1 cut(s)	154
AoxI	GGCC	2 cut(s)	302, 454
ApeKI	GCWGC	4 cut(s)	250, 392, 569, 602
ApoI	RAATTY	3 cut(s)	398, 746, 928
AspS9I	GGNCC	1 cut(s)	455
AsuC2I	CCSGG	1 cut(s)	596
AsuHPI	GGTGA	2 cut(s)	443, 523
BaeGI	GKGCMC	1 cut(s)	897
BaeI	ACNNNNGTAYC	2 cut(s)	97, 130
BarI	GAAGNNNNNNTAC	2 cut(s)	426, 458
BbrPI	CACGTG	2 cut(s)	308, 766
BbsI	GAAGAC	1 cut(s)	392
BbvI	GCAGC	4 cut(s)	262, 379, 556, 614
BccI	CCATC	4 cut(s)	329, 770, 898, 983
BceAI	ACGGC	1 cut(s)	61
BciT130I	CCWGG	4 cut(s)	111, 255, 429, 665
BcnI	CCSGG	1 cut(s)	596
BcoDI	GTCTC	2 cut(s)	585, 866
BfaI	CTAG	1 cut(s)	404
BfmI	CTRYAG	1 cut(s)	751
BisI	GCNGC	6 cut(s)	55, 58, 251, 393, 570, 603
BlsI	GCNGC	6 cut(s)	56, 59, 252, 394, 571, 604
BmcAI	AGTACT	1 cut(s)	996
Bme1390I	CCNGG	5 cut(s)	111, 255, 429, 596, 665
BmgT120I	GGNCC	1 cut(s)	455
BmiI	GGNNCC	1 cut(s)	457
BmrFI	CCNGG	5 cut(s)	111, 255, 429, 596, 665
BmrI	ACTGGG	1 cut(s)	560
BmsI	GCATC	2 cut(s)	199, 891
BmuI	ACTGGG	1 cut(s)	560
BoxI	GACNNNNGTC	1 cut(s)	665
BpiI	GAAGAC	1 cut(s)	392
BpmI	CTGGAG	1 cut(s)	348
Bpu10I	CCTNAGC	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	596
Bsa29I	ATCGAT	2 cut(s)	99, 117
BsaAI	YACGTR	2 cut(s)	308, 766
BsaI	GGTCTC	1 cut(s)	585
BsaJI	CCNNGG	5 cut(s)	109, 325, 451, 663, 941
BsaWI	WCCGGW	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 947
Bse1I	ACTGG	1 cut(s)	555
Bse3DI	GCAATG	1 cut(s)	226
BseAI	TCCGGA	1 cut(s)	154
BseBI	CCWGG	4 cut(s)	111, 255, 429, 665
BseCI	ATCGAT	2 cut(s)	99, 117
BseDI	CCNNGG	5 cut(s)	109, 325, 451, 663, 941
BseGI	GGATG	1 cut(s)	994
BseLI	CCNNNNNNNGG	2 cut(s)	293, 947
BseMI	GCAATG	1 cut(s)	226
BseMII	CTCAG	2 cut(s)	273, 890
BseNI	ACTGG	1 cut(s)	555
BseRI	GAGGAG	2 cut(s)	351, 680
BseSI	GKGCMC	1 cut(s)	897
BseXI	GCAGC	4 cut(s)	262, 379, 556, 614
BshFI	GGCC	2 cut(s)	304, 456
BshVI	ATCGAT	2 cut(s)	99, 117
BsiSI	CCGG	2 cut(s)	155, 596
BslFI	GGGAC	2 cut(s)	19, 403
BslI	CCNNNNNNNGG	2 cut(s)	293, 947
BsmAI	GTCTC	2 cut(s)	585, 866
BsmFI	GGGAC	2 cut(s)	19, 403
BsnI	GGCC	2 cut(s)	304, 456
Bso31I	GGTCTC	1 cut(s)	585
Bsp1286I	GDGCHC	1 cut(s)	897
Bsp13I	TCCGGA	1 cut(s)	154
Bsp143I	GATC	4 cut(s)	240, 835, 907, 1012
Bsp19I	CCATGG	1 cut(s)	941
BspACI	CCGC	6 cut(s)	32, 48, 54, 57, 269, 534
BspANI	GGCC	2 cut(s)	304, 456
BspCNI	CTCAG	2 cut(s)	274, 889
BspDI	ATCGAT	2 cut(s)	99, 117
BspEI	TCCGGA	1 cut(s)	154
BspHI	TCATGA	1 cut(s)	799
BspLI	GGNNCC	1 cut(s)	457
BspPI	GGATC	1 cut(s)	915
BspTNI	GGTCTC	1 cut(s)	585
BsrDI	GCAATG	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	555
BssECI	CCNNGG	5 cut(s)	109, 325, 451, 663, 941
BssMI	GATC	4 cut(s)	240, 835, 907, 1012
BssT1I	CCWWGG	2 cut(s)	451, 941
Bst2UI	CCWGG	4 cut(s)	111, 255, 429, 665
Bst4CI	ACNGT	6 cut(s)	10, 29, 329, 415, 640, 979
Bst6I	CTCTTC	1 cut(s)	509
BstBAI	YACGTR	2 cut(s)	308, 766
BstDEI	CTNAG	2 cut(s)	282, 876
BstDSI	CCRYGG	2 cut(s)	325, 941
BstF5I	GGATG	1 cut(s)	994
BstKTI	GATC	4 cut(s)	243, 838, 910, 1015
BstMAI	GTCTC	2 cut(s)	585, 866
BstMBI	GATC	4 cut(s)	240, 835, 907, 1012
BstMWI	GCNNNNNNNGC	5 cut(s)	54, 88, 259, 545, 575
BstNI	CCWGG	4 cut(s)	111, 255, 429, 665
BstNSI	RCATGY	1 cut(s)	722
BstPAI	GACNNNNGTC	1 cut(s)	665
BstSCI	CCNGG	5 cut(s)	109, 253, 427, 594, 663
BstSFI	CTRYAG	1 cut(s)	751
BstSLI	GKGCMC	1 cut(s)	897
BstV1I	GCAGC	4 cut(s)	262, 379, 556, 614
BstV2I	GAAGAC	1 cut(s)	392
BstXI	CCANNNNNNTGG	1 cut(s)	428
Bsu15I	ATCGAT	2 cut(s)	99, 117
BsuRI	GGCC	2 cut(s)	304, 456
BsuTUI	ATCGAT	2 cut(s)	99, 117
BtgI	CCRYGG	2 cut(s)	325, 941
BtsCI	GGATG	1 cut(s)	994
BtsIMutI	CAGTG	3 cut(s)	201, 548, 984
CaiI	CAGNNNCTG	1 cut(s)	683
CciI	TCATGA	1 cut(s)	799
Cfr13I	GGNCC	1 cut(s)	455
ClaI	ATCGAT	2 cut(s)	99, 117
Csp6I	GTAC	2 cut(s)	527, 995
CviAII	CATG	3 cut(s)	719, 800, 942
CviJI	RGCY	9 cut(s)	91, 174, 253, 279, 286, 304, 456, 629, 951
CviKI_1	RGCY	9 cut(s)	91, 174, 253, 279, 286, 304, 456, 629, 951
CviQI	GTAC	2 cut(s)	527, 995
DdeI	CTNAG	2 cut(s)	282, 876
DpnI	GATC	4 cut(s)	242, 837, 909, 1014
DpnII	GATC	4 cut(s)	240, 835, 907, 1012
Eam1104I	CTCTTC	1 cut(s)	509
EarI	CTCTTC	1 cut(s)	509
EciI	GGCGGA	2 cut(s)	63, 284
Eco130I	CCWWGG	2 cut(s)	451, 941
Eco31I	GGTCTC	1 cut(s)	585
Eco57I	CTGAAG	4 cut(s)	98, 225, 311, 594
Eco72I	CACGTG	2 cut(s)	308, 766
EcoRI	GAATTC	1 cut(s)	928
EcoRII	CCWGG	4 cut(s)	109, 253, 427, 663
EcoT14I	CCWWGG	2 cut(s)	451, 941
ErhI	CCWWGG	2 cut(s)	451, 941
FaeI	CATG	3 cut(s)	722, 803, 945
FalI	AAGNNNNNCTT	4 cut(s)	478, 510, 724, 756
FaqI	GGGAC	2 cut(s)	19, 403
FatI	CATG	3 cut(s)	718, 799, 941
Fnu4HI	GCNGC	6 cut(s)	55, 58, 251, 393, 570, 603
FokI	GGATG	1 cut(s)	1001
Fsp4HI	GCNGC	6 cut(s)	55, 58, 251, 393, 570, 603
FspBI	CTAG	1 cut(s)	404
GluI	GCNGC	6 cut(s)	55, 58, 251, 393, 570, 603
GsuI	CTGGAG	1 cut(s)	348
HaeIII	GGCC	2 cut(s)	304, 456
HapII	CCGG	2 cut(s)	155, 596
Hin1II	CATG	3 cut(s)	722, 803, 945
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	4 cut(s)	491, 680, 704, 874
HpaII	CCGG	2 cut(s)	155, 596
HphI	GGTGA	2 cut(s)	443, 523
Hpy166II	GTNNAC	4 cut(s)	43, 325, 675, 982
Hpy188I	TCNGA	5 cut(s)	78, 291, 334, 685, 775
Hpy188III	TCNNGA	5 cut(s)	155, 365, 800, 833, 1029
Hpy8I	GTNNAC	4 cut(s)	43, 325, 675, 982
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	4 cut(s)	286, 294, 806, 847
HpyCH4III	ACNGT	6 cut(s)	10, 29, 329, 415, 640, 979
HpyCH4IV	ACGT	3 cut(s)	307, 765, 984
HpyCH4V	TGCA	3 cut(s)	72, 503, 548
HpyF10VI	GCNNNNNNNGC	5 cut(s)	54, 88, 259, 545, 575
HpyF3I	CTNAG	2 cut(s)	282, 876
HpySE526I	ACGT	3 cut(s)	307, 765, 984
Hsp92II	CATG	3 cut(s)	722, 803, 945
Kpn2I	TCCGGA	1 cut(s)	154
Kzo9I	GATC	4 cut(s)	240, 835, 907, 1012
Lsp1109I	GCAGC	4 cut(s)	262, 379, 556, 614
LweI	GCATC	2 cut(s)	199, 891
MaeI	CTAG	1 cut(s)	404
MaeII	ACGT	3 cut(s)	307, 765, 984
MaeIII	GTNAC	2 cut(s)	196, 734
MalI	GATC	4 cut(s)	242, 837, 909, 1014
MboI	GATC	4 cut(s)	240, 835, 907, 1012
MboII	GAAGA	4 cut(s)	218, 397, 486, 526
MhlI	GDGCHC	1 cut(s)	897
MluCI	AATT	6 cut(s)	378, 398, 725, 746, 922, 928
MlyI	GAGTC	1 cut(s)	868
MmeI	TCCRAC	3 cut(s)	141, 625, 718
MnlI	CCTC	8 cut(s)	265, 297, 369, 372, 510, 698, 701, 858
MroI	TCCGGA	1 cut(s)	154
MseI	TTAA	1 cut(s)	137
MslI	CAYNNNNRTG	1 cut(s)	902
MspI	CCGG	2 cut(s)	155, 596
MspR9I	CCNGG	5 cut(s)	111, 255, 429, 596, 665
MvaI	CCWGG	4 cut(s)	111, 255, 429, 665
MwoI	GCNNNNNNNGC	5 cut(s)	54, 88, 259, 545, 575
NciI	CCSGG	1 cut(s)	596
NcoI	CCATGG	1 cut(s)	941
NdeII	GATC	4 cut(s)	240, 835, 907, 1012
NlaIII	CATG	3 cut(s)	722, 803, 945
NlaIV	GGNNCC	1 cut(s)	457
NmuCI	GTSAC	1 cut(s)	734
NspI	RCATGY	1 cut(s)	722
PagI	TCATGA	1 cut(s)	799
PfeI	GAWTC	3 cut(s)	491, 680, 704
PflFI	GACNNNGTC	2 cut(s)	320, 806
PkrI	GCNGC	6 cut(s)	56, 59, 252, 394, 571, 604
PleI	GAGTC	1 cut(s)	868
PmaCI	CACGTG	2 cut(s)	308, 766
PmlI	CACGTG	2 cut(s)	308, 766
PpsI	GAGTC	1 cut(s)	868
Ppu21I	YACGTR	2 cut(s)	308, 766
PshAI	GACNNNNGTC	1 cut(s)	665
PsiI	TTATAA	1 cut(s)	95
Psp6I	CCWGG	4 cut(s)	109, 253, 427, 663
PspCI	CACGTG	2 cut(s)	308, 766
PspGI	CCWGG	4 cut(s)	109, 253, 427, 663
PspN4I	GGNNCC	1 cut(s)	457
PspPI	GGNCC	1 cut(s)	455
PstNI	CAGNNNCTG	1 cut(s)	683
PsyI	GACNNNGTC	2 cut(s)	320, 806
RsaI	GTAC	2 cut(s)	528, 996
RsaNI	GTAC	2 cut(s)	527, 995
RseI	CAYNNNNRTG	1 cut(s)	902
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	6 cut(s)	55, 58, 251, 393, 570, 603
Sau3AI	GATC	4 cut(s)	240, 835, 907, 1012
Sau96I	GGNCC	1 cut(s)	455
ScaI	AGTACT	1 cut(s)	996
SchI	GAGTC	1 cut(s)	868
ScrFI	CCNGG	5 cut(s)	111, 255, 429, 596, 665
SduI	GDGCHC	1 cut(s)	897
SetI	ASST	9 cut(s)	93, 259, 310, 361, 513, 669, 690, 768, 987
SfaNI	GCATC	2 cut(s)	199, 891
SfcI	CTRYAG	1 cut(s)	751
SmiMI	CAYNNNNRTG	1 cut(s)	902
Sse9I	AATT	6 cut(s)	378, 398, 725, 746, 922, 928
SsiI	CCGC	6 cut(s)	32, 48, 54, 57, 269, 534
SspI	AATATT	4 cut(s)	168, 186, 583, 655
SspMI	CTAG	1 cut(s)	404
StyD4I	CCNGG	5 cut(s)	109, 253, 427, 594, 663
StyI	CCWWGG	2 cut(s)	451, 941
TaaI	ACNGT	6 cut(s)	10, 29, 329, 415, 640, 979
TaiI	ACGT	3 cut(s)	310, 768, 987
TaqI	TCGA	3 cut(s)	99, 117, 1015
TasI	AATT	6 cut(s)	378, 398, 725, 746, 922, 928
TatI	WGTACW	2 cut(s)	526, 994
TauI	GCSGC	2 cut(s)	57, 60
TfiI	GAWTC	3 cut(s)	491, 680, 704
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TscAI	CASTG	3 cut(s)	208, 555, 984
TseFI	GTSAC	1 cut(s)	734
TseI	GCWGC	4 cut(s)	250, 392, 569, 602
Tsp45I	GTSAC	1 cut(s)	734
TspDTI	ATGAA	2 cut(s)	718, 788
TspGWI	ACGGA	1 cut(s)	818
TspRI	CASTG	3 cut(s)	208, 555, 984
Tth111I	GACNNNGTC	2 cut(s)	320, 806
XapI	RAATTY	3 cut(s)	398, 746, 928
XceI	RCATGY	1 cut(s)	722
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332
XspI	CTAG	1 cut(s)	404
ZrmI	AGTACT	1 cut(s)	996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.