Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0009889

Physical Location & Seq

Genomic Coordinates Reverse (-)

1515129 .. 1516967

Gene Structure 1839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g01950.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCCATCTTAATGGCATTTCAATCACCGGAGTTAGAAATCTTAGGCTTCACAACAATATTTGGTAATGTCACCACGGAAGACGCCACTCGCAATGCCTTGCTTCTGTGTGAGATCGCAGGGCATCCAGGTTTGCCAGTGGCAGAGGGAAGTCCTGAGCCTCTAAAGGGTGGAAGCCCACGTGTGGCAGACTTTGTACATGGTTCTGATGGGATGGGGAACTTGCATCTACCTCCTCCAAAAACAAAGAAAATTGAGAAGAAAGCTGCTGAGTTTTTAGTTGATATGATCTCTGAGTATCCTGGTGAAGTATCCATACTGGCCCTGGGTCCCTTGACAAACTTAGCATTGGCAATCAAAAGGGATTCTTCATTCGCGAAAAAGGTGAAAAGGGTGGTCGTACTTGGCGGTTCCTTCTTTGCTTTGGGAAATGTAAATCCTGCTGCTGAAGCAAATATTTATGGAGATCCAGAAGCGGCAGATGTTGTGTTTACGTCTGGGGCTAACATTACTGTTGTTGGAATAAATATTACAACCCAAGTGAAATTTACAGATGATGACCTCCTTCAACTGCGGCAATCTAAAGGAAAGCATACTCAATTCATATGTGACTCGTGCAAATTCTACAGAGACTGGCATGTGAAATCTGATGGTGTTTATGGGATTTTCCTTCATGACCCTGTCAGTTTTGTAGCACTAGTCCGTCCTGATCTCTTCACGTACAAGAAGGGCGTTGTGAGGGTTGAGACTCAGGGTATCTGCGTCGGGCATACACTGATGGATCAAGGACTGAAAAAGTGGAATACAGGCAATCCATGGACAGGTTATTCCCCTGTTGAAGTTGCTTGGACGGTGAATGTGGATGCAGTCCTGGATTACATACGAAATCTGTTGATGAAATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006152 GO:0006213 GO:0006218 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008477 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019439 GO:0034641 GO:0034655 GO:0034656 GO:0042278 GO:0042454 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0045437 GO:0046108 GO:0046131 GO:0046133 GO:0046135 GO:0046483 GO:0046700 GO:0047622 GO:0047724 GO:0050263 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:0072527 GO:0072529 GO:0072585 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00760 map00240 map00760

Pfam Domains

Protein Families

IU_nuc_hydro

Protein Analysis

302

Amino Acids

32.71

Weight (kDa)

6.17

Isoelectric Point (pI)

35.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36310
fragaria_vesca	FvH4_6g18360 FvH4_6g18360 FvH4_6g18360
malus_domestica	MD12G1022900.v1.1 MD14G1019900.v1.1
prunus_persica	Prupe.7G113700_v2.0.a1 Prupe.7G113700_v2.0.a1 Prupe.7G113700_v2.0.a1 Prupe.7G113700_v2.0.a1
pyrus_communis	pycom12g02140 pycom14g01950
rosa_chinensis	RchiOBHm_Chr3g0472851
rosa_laevigata	RLG00000024051
rosa_roxburghii	Rroxscaffold_6G00408560
rosa_rugosa	Rorug03G0128100
rosa_samantha	Rh3AG180800 Rh3BG207000 Rh3CG204200 Rh3DG168900
rosa_wichuraiana	Rw3G016220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	377
AciI	CCGC	3 cut(s)	408, 476, 574
AclWI	GGATC	2 cut(s)	461, 789
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	545, 620
AcuI	CTGAAG	1 cut(s)	468
AcvI	CACGTG	1 cut(s)	182
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	3 cut(s)	198, 402, 722
AfiI	CCNNNNNNNGG	3 cut(s)	167, 184, 821
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	3 cut(s)	23, 569, 839
AhlI	ACTAGT	1 cut(s)	697
AjnI	CCWGG	4 cut(s)	127, 301, 324, 870
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
Alw26I	GTCTC	2 cut(s)	624, 740
AlwI	GGATC	2 cut(s)	461, 789
AlwNI	CAGNNNCTG	1 cut(s)	633
AoxI	GGCC	2 cut(s)	3, 321
ApeKI	GCWGC	2 cut(s)	266, 443
ApoI	RAATTY	2 cut(s)	545, 620
AspS9I	GGNCC	2 cut(s)	322, 329
AsuHPI	GGTGA	5 cut(s)	18, 64, 317, 397, 865
AvaII	GGWCC	1 cut(s)	329
BalI	TGGCCA	1 cut(s)	5
BarI	GAAGNNNNNNTAC	2 cut(s)	300, 332
BauI	CACGAG	1 cut(s)	613
BbrPI	CACGTG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	2 cut(s)	253, 430
BccI	CCATC	5 cut(s)	14, 203, 208, 644, 772
BciT130I	CCWGG	4 cut(s)	129, 303, 326, 872
BciVI	GTATCC	2 cut(s)	309, 322
BcoDI	GTCTC	2 cut(s)	624, 740
BcuI	ACTAGT	1 cut(s)	697
BfaI	CTAG	1 cut(s)	698
BfmI	CTRYAG	1 cut(s)	625
BfuI	GTATCC	2 cut(s)	309, 322
BisI	GCNGC	4 cut(s)	267, 444, 477, 575
BlsI	GCNGC	4 cut(s)	268, 445, 478, 576
Bme1390I	CCNGG	4 cut(s)	129, 303, 326, 872
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	2 cut(s)	322, 329
BmiI	GGNNCC	3 cut(s)	330, 331, 412
BmrFI	CCNGG	4 cut(s)	129, 303, 326, 872
BmsI	GCATC	3 cut(s)	133, 235, 853
BpiI	GAAGAC	1 cut(s)	87
Bpu10I	CCTNAGC	1 cut(s)	156
BsaAI	YACGTR	2 cut(s)	182, 720
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	4 cut(s)	75, 324, 325, 815
BsaWI	WCCGGW	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 184, 821
Bse1I	ACTGG	3 cut(s)	137, 324, 638
Bse3DI	GCAATG	1 cut(s)	100
BseBI	CCWGG	4 cut(s)	129, 303, 326, 872
BseDI	CCNNGG	4 cut(s)	75, 324, 325, 815
BseGI	GGATG	3 cut(s)	124, 219, 868
BseLI	CCNNNNNNNGG	3 cut(s)	167, 184, 821
BseMI	GCAATG	1 cut(s)	100
BseMII	CTCAG	4 cut(s)	147, 261, 285, 764
BseNI	ACTGG	3 cut(s)	137, 324, 638
BseRI	GAGGAG	1 cut(s)	225
BseXI	GCAGC	2 cut(s)	253, 430
Bsh1236I	CGCG	1 cut(s)	377
BshFI	GGCC	2 cut(s)	5, 323
BsiSI	CCGG	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	3 cut(s)	167, 184, 821
BsmAI	GTCTC	2 cut(s)	624, 740
BsmFI	GGGAC	1 cut(s)	315
BsnI	GGCC	2 cut(s)	5, 323
Bsp1407I	TGTACA	1 cut(s)	196
Bsp143I	GATC	5 cut(s)	114, 288, 466, 709, 781
Bsp19I	CCATGG	1 cut(s)	815
Bsp68I	TCGCGA	1 cut(s)	377
BspACI	CCGC	3 cut(s)	408, 476, 574
BspANI	GGCC	2 cut(s)	5, 323
BspCNI	CTCAG	4 cut(s)	148, 262, 286, 763
BspFNI	CGCG	1 cut(s)	377
BspHI	TCATGA	1 cut(s)	673
BspLI	GGNNCC	3 cut(s)	330, 331, 412
BspPI	GGATC	2 cut(s)	461, 789
BsrDI	GCAATG	1 cut(s)	100
BsrGI	TGTACA	1 cut(s)	196
BsrI	ACTGG	3 cut(s)	137, 324, 638
BssECI	CCNNGG	4 cut(s)	75, 324, 325, 815
BssMI	GATC	5 cut(s)	114, 288, 466, 709, 781
BssNI	GRCGYC	1 cut(s)	84
BssSI	CACGAG	1 cut(s)	613
BssT1I	CCWWGG	1 cut(s)	815
Bst2BI	CACGAG	1 cut(s)	613
Bst2UI	CCWGG	4 cut(s)	129, 303, 326, 872
Bst4CI	ACNGT	2 cut(s)	514, 853
Bst6I	CTCTTC	1 cut(s)	719
BstACI	GRCGYC	1 cut(s)	84
BstAUI	TGTACA	1 cut(s)	196
BstBAI	YACGTR	2 cut(s)	182, 720
BstDEI	CTNAG	6 cut(s)	43, 156, 270, 294, 343, 750
BstDSI	CCRYGG	2 cut(s)	75, 815
BstF5I	GGATG	3 cut(s)	124, 219, 868
BstFNI	CGCG	1 cut(s)	377
BstKTI	GATC	5 cut(s)	117, 291, 469, 712, 784
BstMAI	GTCTC	2 cut(s)	624, 740
BstMBI	GATC	5 cut(s)	114, 288, 466, 709, 781
BstMWI	GCNNNNNNNGC	1 cut(s)	449
BstNI	CCWGG	4 cut(s)	129, 303, 326, 872
BstNSI	RCATGY	1 cut(s)	641
BstSCI	CCNGG	4 cut(s)	127, 301, 324, 870
BstSFI	CTRYAG	1 cut(s)	625
BstUI	CGCG	1 cut(s)	377
BstV1I	GCAGC	2 cut(s)	253, 430
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	466
BstXI	CCANNNNNNTGG	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	466
BsuI	GTATCC	2 cut(s)	309, 322
BsuRI	GGCC	2 cut(s)	5, 323
BtgI	CCRYGG	2 cut(s)	75, 815
BtsCI	GGATG	3 cut(s)	124, 219, 868
BtsIMutI	CAGTG	2 cut(s)	144, 773
BtuMI	TCGCGA	1 cut(s)	377
CaiI	CAGNNNCTG	1 cut(s)	633
CciI	TCATGA	1 cut(s)	673
Cfr13I	GGNCC	2 cut(s)	322, 329
CseI	GACGC	2 cut(s)	92, 751
Csp6I	GTAC	3 cut(s)	197, 401, 721
CviAII	CATG	4 cut(s)	200, 638, 674, 816
CviJI	RGCY	7 cut(s)	5, 48, 160, 177, 266, 323, 503
CviKI_1	RGCY	7 cut(s)	5, 48, 160, 177, 266, 323, 503
CviQI	GTAC	3 cut(s)	197, 401, 721
DdeI	CTNAG	6 cut(s)	43, 156, 270, 294, 343, 750
DpnI	GATC	5 cut(s)	116, 290, 468, 711, 783
DpnII	GATC	5 cut(s)	114, 288, 466, 709, 781
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	719
EarI	CTCTTC	1 cut(s)	719
Eco130I	CCWWGG	1 cut(s)	815
Eco47I	GGWCC	1 cut(s)	329
Eco57I	CTGAAG	1 cut(s)	468
Eco72I	CACGTG	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	329
EcoRII	CCWGG	4 cut(s)	127, 301, 324, 870
EcoT14I	CCWWGG	1 cut(s)	815
ErhI	CCWWGG	1 cut(s)	815
FaeI	CATG	4 cut(s)	203, 641, 677, 819
FalI	AAGNNNNNCTT	2 cut(s)	352, 384
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	4 cut(s)	199, 637, 673, 815
FauNDI	CATATG	1 cut(s)	605
Fnu4HI	GCNGC	4 cut(s)	267, 444, 477, 575
FokI	GGATG	3 cut(s)	111, 226, 875
Fsp4HI	GCNGC	4 cut(s)	267, 444, 477, 575
FspBI	CTAG	1 cut(s)	698
GluI	GCNGC	4 cut(s)	267, 444, 477, 575
HaeIII	GGCC	2 cut(s)	5, 323
HapII	CCGG	1 cut(s)	29
HgaI	GACGC	2 cut(s)	92, 751
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	4 cut(s)	203, 641, 677, 819
HinfI	GANTC	3 cut(s)	365, 611, 748
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	5 cut(s)	18, 64, 317, 397, 865
Hpy166II	GTNNAC	1 cut(s)	492
Hpy188I	TCNGA	3 cut(s)	208, 295, 649
Hpy188III	TCNNGA	6 cut(s)	155, 376, 470, 674, 707, 903
Hpy8I	GTNNAC	1 cut(s)	492
Hpy99I	CGWCG	1 cut(s)	767
HpyAV	CCTTC	4 cut(s)	424, 575, 680, 721
HpyCH4III	ACNGT	2 cut(s)	514, 853
HpyCH4IV	ACGT	3 cut(s)	181, 494, 719
HpyCH4V	TGCA	3 cut(s)	226, 618, 866
HpyF10VI	GCNNNNNNNGC	1 cut(s)	449
HpyF3I	CTNAG	6 cut(s)	43, 156, 270, 294, 343, 750
HpySE526I	ACGT	3 cut(s)	181, 494, 719
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	4 cut(s)	203, 641, 677, 819
KflI	GGGWCCC	1 cut(s)	329
Kzo9I	GATC	5 cut(s)	114, 288, 466, 709, 781
Lsp1109I	GCAGC	2 cut(s)	253, 430
LweI	GCATC	3 cut(s)	133, 235, 853
MaeI	CTAG	1 cut(s)	698
MaeII	ACGT	3 cut(s)	181, 494, 719
MaeIII	GTNAC	2 cut(s)	70, 608
MalI	GATC	5 cut(s)	116, 290, 468, 711, 783
MboI	GATC	5 cut(s)	114, 288, 466, 709, 781
MboII	GAAGA	4 cut(s)	92, 271, 360, 706
MflI	RGATCY	1 cut(s)	466
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	252, 545, 599, 620
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	605, 742
MmeI	TCCRAC	1 cut(s)	499
MnlI	CCTC	6 cut(s)	139, 171, 243, 246, 572, 732
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	11
MslI	CAYNNNNRTG	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	4 cut(s)	129, 303, 326, 872
MvaI	CCWGG	4 cut(s)	129, 303, 326, 872
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	1 cut(s)	449
NcoI	CCATGG	1 cut(s)	815
NdeI	CATATG	1 cut(s)	605
NdeII	GATC	5 cut(s)	114, 288, 466, 709, 781
NlaIII	CATG	4 cut(s)	203, 641, 677, 819
NlaIV	GGNNCC	3 cut(s)	330, 331, 412
NmuCI	GTSAC	2 cut(s)	70, 608
NruI	TCGCGA	1 cut(s)	377
NspI	RCATGY	1 cut(s)	641
PagI	TCATGA	1 cut(s)	673
PasI	CCCWGGG	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	365
PflFI	GACNNNGTC	1 cut(s)	680
PfoI	TCCNGGA	1 cut(s)	870
PkrI	GCNGC	4 cut(s)	268, 445, 478, 576
PleI	GAGTC	2 cut(s)	605, 742
PmaCI	CACGTG	1 cut(s)	182
PmlI	CACGTG	1 cut(s)	182
PpsI	GAGTC	2 cut(s)	605, 742
Ppu21I	YACGTR	2 cut(s)	182, 720
PpuMI	RGGWCCY	1 cut(s)	329
Psp5II	RGGWCCY	1 cut(s)	329
Psp6I	CCWGG	4 cut(s)	127, 301, 324, 870
PspCI	CACGTG	1 cut(s)	182
PspGI	CCWGG	4 cut(s)	127, 301, 324, 870
PspN4I	GGNNCC	3 cut(s)	330, 331, 412
PspPI	GGNCC	2 cut(s)	322, 329
PspPPI	RGGWCCY	1 cut(s)	329
PstNI	CAGNNNCTG	1 cut(s)	633
PsuI	RGATCY	1 cut(s)	466
PsyI	GACNNNGTC	1 cut(s)	680
RruI	TCGCGA	1 cut(s)	377
RsaI	GTAC	3 cut(s)	198, 402, 722
RsaNI	GTAC	3 cut(s)	197, 401, 721
RseI	CAYNNNNRTG	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	4 cut(s)	267, 444, 477, 575
Sau3AI	GATC	5 cut(s)	114, 288, 466, 709, 781
Sau96I	GGNCC	2 cut(s)	322, 329
SchI	GAGTC	2 cut(s)	605, 742
ScrFI	CCNGG	4 cut(s)	129, 303, 326, 872
SetI	ASST	9 cut(s)	133, 184, 235, 268, 387, 497, 564, 722, 826
SfaNI	GCATC	3 cut(s)	133, 235, 853
SfcI	CTRYAG	1 cut(s)	625
SinI	GGWCC	1 cut(s)	329
SmiMI	CAYNNNNRTG	1 cut(s)	11
SpeI	ACTAGT	1 cut(s)	697
Sse9I	AATT	4 cut(s)	252, 545, 599, 620
SsiI	CCGC	3 cut(s)	408, 476, 574
SspI	AATATT	3 cut(s)	60, 457, 529
SspMI	CTAG	1 cut(s)	698
StyD4I	CCNGG	4 cut(s)	127, 301, 324, 870
StyI	CCWWGG	1 cut(s)	815
TaaI	ACNGT	2 cut(s)	514, 853
TaiI	ACGT	3 cut(s)	184, 497, 722
TasI	AATT	4 cut(s)	252, 545, 599, 620
TatI	WGTACW	1 cut(s)	196
TauI	GCSGC	2 cut(s)	479, 577
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	2 cut(s)	144, 780
TseFI	GTSAC	2 cut(s)	70, 608
TseI	GCWGC	2 cut(s)	266, 443
Tsp45I	GTSAC	2 cut(s)	70, 608
TspDTI	ATGAA	3 cut(s)	360, 592, 662
TspGWI	ACGGA	2 cut(s)	92, 692
TspRI	CASTG	2 cut(s)	144, 780
Tth111I	GACNNNGTC	1 cut(s)	680
VpaK11BI	GGWCC	1 cut(s)	329
XapI	RAATTY	2 cut(s)	545, 620
XceI	RCATGY	1 cut(s)	641
XcmI	CCANNNNNNNNNTGG	1 cut(s)	322
XspI	CTAG	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.