Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0009889

Physical Location & Seq

Genomic Coordinates Reverse (-)

1876198 .. 1879880

Gene Structure 3683 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1019900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGAGAGCACGATGACGAATTCTAACGGCGTGGCTGTCGATGGCGAAAGAGACTGCGTTCTGGCTAATCATCTGAAGCGCGAGAAGCTCATTATCGATACCGACCCTGGAATTGATGATACCATGGCCATCTTAATGGCATTTCAATCACCGGAGTTAGAAATCTTAGGCTTCACAACAATATTTGGTAATGTCACCACAGAAGATGCCACTCGCAATGCCTTGCTTCTGTGTGAGATCGCAGGGCATCCAGGTTTGCCTGTGGCAGAGGGAAGTCCTGAGCCTCTAAAGGGTGGAAGCCCACGTGTGGCAGACTTTATACATGGTTCTGATGGGATGGGGAACTTGCATCTACCTCCTCCAAAAGCAAAGAAAATTGAGAAGAATGCTGCTGAGTTTTTAGTTGATATGGTCTCTGAGTATCCTGGTGAAGTATCTATACTGGCCCTGGGTCCCTTGACAAACTTAGCATTGGCAATCAAAAGGGATTCTTCATTTGCAAAAAAGGTGAAAAGGGTGGTCATACTTGGTGGTTCCTTCTTTGCTCTGGGAAATGTAAATCCTGCTGCTGAAGCAAATATTTATGGAGATCCAGAAGCAGCAGATGTTGTGTTTACGTCTGGGGCGAAGATTACTGTTGTTGGAATAAATATTACGACCCAAGTGAAATTTACAGATGACGACCTCCTTCAACTGCGGCAATCTAAAGGAAAGCATACTCAATTCATATGCGACTCATGCAAATTCTACAGAGACTGGCATGTGAAATCTGATGGTGTTTATGGGATTTTCCTTCATGACCCTGTCAGTTTTGTAGCACTAGTCCGTCCTGATCTCTTCACGTACAAGAAGGGCGTTGTGAGGGTTGAGACTCAGGGTATCTGCGTCGGGCATACACTGATGGATCAAGGACTGAAAAAGTGGAATACAAGCAATCCATGGACAGGTTATTCCCCTGTTGAAGTTGCTTGGACGGTGAATGTGGATGCAGTCCTTGATTATATACGAAATCAGTTGATGAAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006152 GO:0006213 GO:0006218 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008477 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019439 GO:0034641 GO:0034655 GO:0034656 GO:0042278 GO:0042454 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0045437 GO:0046108 GO:0046131 GO:0046133 GO:0046135 GO:0046483 GO:0046700 GO:0047622 GO:0047724 GO:0050263 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:0072527 GO:0072529 GO:0072585 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00760 map00240 map00760

Pfam Domains

Protein Families

IU_nuc_hydro

Protein Analysis

343

Amino Acids

37.19

Weight (kDa)

5.52

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IU_nuc_hydro	PF01156	30 - 332	8.2e-93	Inosine-uridine preferring nucleoside hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36310
fragaria_vesca	FvH4_6g18360 FvH4_6g18360 FvH4_6g18360
malus_domestica	MD12G1022900.v1.1 MD14G1019900.v1.1
prunus_persica	Prupe.7G113700_v2.0.a1 Prupe.7G113700_v2.0.a1 Prupe.7G113700_v2.0.a1 Prupe.7G113700_v2.0.a1
pyrus_communis	pycom12g02140 pycom14g01950
rosa_chinensis	RchiOBHm_Chr3g0472851
rosa_laevigata	RLG00000024051
rosa_roxburghii	Rroxscaffold_6G00408560
rosa_rugosa	Rorug03G0128100
rosa_samantha	Rh3AG180800 Rh3BG207000 Rh3CG204200 Rh3DG168900
rosa_wichuraiana	Rw3G016220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	81
AciI	CCGC	1 cut(s)	697
AclWI	GGATC	2 cut(s)	584, 912
AcoI	YGGCCR	1 cut(s)	126
AcsI	RAATTY	3 cut(s)	19, 668, 743
AcuI	CTGAAG	2 cut(s)	95, 591
AcvI	CACGTG	1 cut(s)	305
AfaI	GTAC	1 cut(s)	845
AfiI	CCNNNNNNNGG	3 cut(s)	290, 307, 944
AflIII	ACRYGT	1 cut(s)	304
AgsI	TTSAA	3 cut(s)	146, 692, 962
AhlI	ACTAGT	1 cut(s)	820
AjnI	CCWGG	4 cut(s)	106, 250, 424, 447
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	4 cut(s)	45, 418, 747, 863
AlwI	GGATC	2 cut(s)	584, 912
AlwNI	CAGNNNCTG	1 cut(s)	756
AoxI	GGCC	2 cut(s)	126, 444
ApeKI	GCWGC	3 cut(s)	389, 566, 599
ApoI	RAATTY	3 cut(s)	19, 668, 743
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	2 cut(s)	445, 452
AsuHPI	GGTGA	5 cut(s)	141, 187, 440, 520, 988
AvaII	GGWCC	1 cut(s)	452
BalI	TGGCCA	1 cut(s)	128
BarI	GAAGNNNNNNTAC	2 cut(s)	423, 455
BbrPI	CACGTG	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	3 cut(s)	376, 553, 611
BccI	CCATC	6 cut(s)	35, 137, 326, 331, 767, 895
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	4 cut(s)	108, 252, 426, 449
BciVI	GTATCC	1 cut(s)	432
BcoDI	GTCTC	4 cut(s)	45, 418, 747, 863
BcuI	ACTAGT	1 cut(s)	820
BfaI	CTAG	1 cut(s)	821
BfmI	CTRYAG	1 cut(s)	748
BfuI	GTATCC	1 cut(s)	432
BisI	GCNGC	4 cut(s)	390, 567, 600, 698
BlsI	GCNGC	4 cut(s)	391, 568, 601, 699
Bme1390I	CCNGG	4 cut(s)	108, 252, 426, 449
Bme18I	GGWCC	1 cut(s)	452
BmgT120I	GGNCC	2 cut(s)	445, 452
BmiI	GGNNCC	3 cut(s)	453, 454, 535
BmrFI	CCNGG	4 cut(s)	108, 252, 426, 449
BmsI	GCATC	4 cut(s)	196, 256, 358, 976
Bpu10I	CCTNAGC	1 cut(s)	279
Bsa29I	ATCGAT	1 cut(s)	96
BsaAI	YACGTR	2 cut(s)	305, 843
BsaI	GGTCTC	1 cut(s)	418
BsaJI	CCNNGG	5 cut(s)	106, 123, 447, 448, 938
BsaWI	WCCGGW	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	3 cut(s)	290, 307, 944
Bse1I	ACTGG	2 cut(s)	447, 761
Bse3DI	GCAATG	1 cut(s)	223
BseBI	CCWGG	4 cut(s)	108, 252, 426, 449
BseCI	ATCGAT	1 cut(s)	96
BseDI	CCNNGG	5 cut(s)	106, 123, 447, 448, 938
BseGI	GGATG	3 cut(s)	247, 342, 991
BseLI	CCNNNNNNNGG	3 cut(s)	290, 307, 944
BseMI	GCAATG	1 cut(s)	223
BseMII	CTCAG	4 cut(s)	270, 384, 408, 887
BseNI	ACTGG	2 cut(s)	447, 761
BseRI	GAGGAG	1 cut(s)	348
BseXI	GCAGC	3 cut(s)	376, 553, 611
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	128, 446
BshVI	ATCGAT	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	152
BslFI	GGGAC	1 cut(s)	438
BslI	CCNNNNNNNGG	3 cut(s)	290, 307, 944
BsmAI	GTCTC	4 cut(s)	45, 418, 747, 863
BsmFI	GGGAC	1 cut(s)	438
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	2 cut(s)	128, 446
Bso31I	GGTCTC	1 cut(s)	418
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	4 cut(s)	237, 589, 832, 904
Bsp19I	CCATGG	2 cut(s)	123, 938
BspACI	CCGC	1 cut(s)	697
BspANI	GGCC	2 cut(s)	128, 446
BspCNI	CTCAG	4 cut(s)	271, 385, 409, 886
BspDI	ATCGAT	1 cut(s)	96
BspFNI	CGCG	1 cut(s)	81
BspHI	TCATGA	1 cut(s)	796
BspLI	GGNNCC	3 cut(s)	453, 454, 535
BspPI	GGATC	2 cut(s)	584, 912
BspTNI	GGTCTC	1 cut(s)	418
BsrDI	GCAATG	1 cut(s)	223
BsrI	ACTGG	2 cut(s)	447, 761
BssECI	CCNNGG	5 cut(s)	106, 123, 447, 448, 938
BssMI	GATC	4 cut(s)	237, 589, 832, 904
BssT1I	CCWWGG	2 cut(s)	123, 938
Bst2UI	CCWGG	4 cut(s)	108, 252, 426, 449
Bst4CI	ACNGT	2 cut(s)	637, 976
Bst6I	CTCTTC	1 cut(s)	842
BstBAI	YACGTR	2 cut(s)	305, 843
BstDEI	CTNAG	6 cut(s)	166, 279, 393, 417, 466, 873
BstDSI	CCRYGG	2 cut(s)	123, 938
BstF5I	GGATG	3 cut(s)	247, 342, 991
BstFNI	CGCG	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	4 cut(s)	240, 592, 835, 907
BstMAI	GTCTC	4 cut(s)	45, 418, 747, 863
BstMBI	GATC	4 cut(s)	237, 589, 832, 904
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 572, 738
BstNI	CCWGG	4 cut(s)	108, 252, 426, 449
BstNSI	RCATGY	1 cut(s)	764
BstSCI	CCNGG	4 cut(s)	106, 250, 424, 447
BstSFI	CTRYAG	1 cut(s)	748
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	3 cut(s)	376, 553, 611
BstX2I	RGATCY	1 cut(s)	589
BstXI	CCANNNNNNTGG	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	589
Bsu15I	ATCGAT	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	432
BsuRI	GGCC	2 cut(s)	128, 446
BsuTUI	ATCGAT	1 cut(s)	96
BtgI	CCRYGG	2 cut(s)	123, 938
BtsCI	GGATG	3 cut(s)	247, 342, 991
BtsIMutI	CAGTG	1 cut(s)	896
CaiI	CAGNNNCTG	1 cut(s)	756
CciI	TCATGA	1 cut(s)	796
CfoI	GCGC	1 cut(s)	81
Cfr13I	GGNCC	2 cut(s)	445, 452
ClaI	ATCGAT	1 cut(s)	96
CseI	GACGC	1 cut(s)	874
Csp6I	GTAC	1 cut(s)	844
CviAII	CATG	6 cut(s)	124, 323, 738, 761, 797, 939
CviJI	RGCY	8 cut(s)	35, 65, 88, 128, 171, 283, 300, 446
CviKI_1	RGCY	8 cut(s)	35, 65, 88, 128, 171, 283, 300, 446
CviQI	GTAC	1 cut(s)	844
DdeI	CTNAG	6 cut(s)	166, 279, 393, 417, 466, 873
DpnI	GATC	4 cut(s)	239, 591, 834, 906
DpnII	GATC	4 cut(s)	237, 589, 832, 904
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	842
EarI	CTCTTC	1 cut(s)	842
Eco130I	CCWWGG	2 cut(s)	123, 938
Eco31I	GGTCTC	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	452
Eco57I	CTGAAG	2 cut(s)	95, 591
Eco72I	CACGTG	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	452
EcoRI	GAATTC	1 cut(s)	19
EcoRII	CCWGG	4 cut(s)	106, 250, 424, 447
EcoT14I	CCWWGG	2 cut(s)	123, 938
ErhI	CCWWGG	2 cut(s)	123, 938
FaeI	CATG	6 cut(s)	127, 326, 741, 764, 800, 942
FalI	AAGNNNNNCTT	2 cut(s)	475, 507
FaqI	GGGAC	1 cut(s)	438
FatI	CATG	6 cut(s)	123, 322, 737, 760, 796, 938
FauNDI	CATATG	1 cut(s)	728
Fnu4HI	GCNGC	4 cut(s)	390, 567, 600, 698
FokI	GGATG	3 cut(s)	234, 349, 998
Fsp4HI	GCNGC	4 cut(s)	390, 567, 600, 698
FspBI	CTAG	1 cut(s)	821
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	4 cut(s)	390, 567, 600, 698
HaeIII	GGCC	2 cut(s)	128, 446
HapII	CCGG	1 cut(s)	152
HgaI	GACGC	1 cut(s)	874
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	6 cut(s)	127, 326, 741, 764, 800, 942
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HinfI	GANTC	3 cut(s)	488, 734, 871
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	5 cut(s)	141, 187, 440, 520, 988
Hpy166II	GTNNAC	1 cut(s)	615
Hpy188I	TCNGA	4 cut(s)	75, 331, 418, 772
Hpy188III	TCNNGA	5 cut(s)	278, 593, 797, 830, 1026
Hpy8I	GTNNAC	1 cut(s)	615
Hpy99I	CGWCG	1 cut(s)	890
HpyAV	CCTTC	4 cut(s)	547, 698, 803, 844
HpyCH4III	ACNGT	2 cut(s)	637, 976
HpyCH4IV	ACGT	3 cut(s)	304, 617, 842
HpyCH4V	TGCA	4 cut(s)	349, 500, 741, 989
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 572, 738
HpyF3I	CTNAG	6 cut(s)	166, 279, 393, 417, 466, 873
HpySE526I	ACGT	3 cut(s)	304, 617, 842
Hsp92II	CATG	6 cut(s)	127, 326, 741, 764, 800, 942
HspAI	GCGC	1 cut(s)	79
KflI	GGGWCCC	1 cut(s)	452
Kzo9I	GATC	4 cut(s)	237, 589, 832, 904
Lsp1109I	GCAGC	3 cut(s)	376, 553, 611
LweI	GCATC	4 cut(s)	196, 256, 358, 976
MaeI	CTAG	1 cut(s)	821
MaeII	ACGT	3 cut(s)	304, 617, 842
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	4 cut(s)	239, 591, 834, 906
MboI	GATC	4 cut(s)	237, 589, 832, 904
MboII	GAAGA	5 cut(s)	215, 394, 483, 640, 829
MflI	RGATCY	1 cut(s)	589
MhlI	GDGCHC	1 cut(s)	11
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	6 cut(s)	19, 111, 375, 668, 722, 743
MluNI	TGGCCA	1 cut(s)	128
MlyI	GAGTC	2 cut(s)	728, 865
MmeI	TCCRAC	1 cut(s)	622
MnlI	CCTC	6 cut(s)	262, 294, 366, 369, 695, 855
Mox20I	TGGCCA	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	1 cut(s)	134
MslI	CAYNNNNRTG	1 cut(s)	134
Msp20I	TGGCCA	1 cut(s)	128
MspI	CCGG	1 cut(s)	152
MspR9I	CCNGG	4 cut(s)	108, 252, 426, 449
Mva1269I	GAATGC	1 cut(s)	391
MvaI	CCWGG	4 cut(s)	108, 252, 426, 449
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	3 cut(s)	85, 572, 738
NcoI	CCATGG	2 cut(s)	123, 938
NdeI	CATATG	1 cut(s)	728
NdeII	GATC	4 cut(s)	237, 589, 832, 904
NlaIII	CATG	6 cut(s)	127, 326, 741, 764, 800, 942
NlaIV	GGNNCC	3 cut(s)	453, 454, 535
NmuCI	GTSAC	1 cut(s)	193
NspI	RCATGY	1 cut(s)	764
PagI	TCATGA	1 cut(s)	796
PasI	CCCWGGG	1 cut(s)	448
PcsI	WCGNNNNNNNCGW	1 cut(s)	623
PctI	GAATGC	1 cut(s)	391
PfeI	GAWTC	1 cut(s)	488
PflFI	GACNNNGTC	1 cut(s)	803
PkrI	GCNGC	4 cut(s)	391, 568, 601, 699
PleI	GAGTC	2 cut(s)	728, 865
PmaCI	CACGTG	1 cut(s)	305
PmlI	CACGTG	1 cut(s)	305
PpsI	GAGTC	2 cut(s)	728, 865
Ppu21I	YACGTR	2 cut(s)	305, 843
PpuMI	RGGWCCY	1 cut(s)	452
Psp5II	RGGWCCY	1 cut(s)	452
Psp6I	CCWGG	4 cut(s)	106, 250, 424, 447
PspCI	CACGTG	1 cut(s)	305
PspGI	CCWGG	4 cut(s)	106, 250, 424, 447
PspN4I	GGNNCC	3 cut(s)	453, 454, 535
PspPI	GGNCC	2 cut(s)	445, 452
PspPPI	RGGWCCY	1 cut(s)	452
PstNI	CAGNNNCTG	1 cut(s)	756
PsuI	RGATCY	1 cut(s)	589
PsyI	GACNNNGTC	1 cut(s)	803
RsaI	GTAC	1 cut(s)	845
RsaNI	GTAC	1 cut(s)	844
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	134
SatI	GCNGC	4 cut(s)	390, 567, 600, 698
Sau3AI	GATC	4 cut(s)	237, 589, 832, 904
Sau96I	GGNCC	2 cut(s)	445, 452
SchI	GAGTC	2 cut(s)	728, 865
ScrFI	CCNGG	4 cut(s)	108, 252, 426, 449
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	9 cut(s)	90, 256, 307, 358, 510, 620, 687, 845, 949
SfaNI	GCATC	4 cut(s)	196, 256, 358, 976
SfcI	CTRYAG	1 cut(s)	748
SinI	GGWCC	1 cut(s)	452
SmiMI	CAYNNNNRTG	1 cut(s)	134
SpeI	ACTAGT	1 cut(s)	820
Sse9I	AATT	6 cut(s)	19, 111, 375, 668, 722, 743
SsiI	CCGC	1 cut(s)	697
SspI	AATATT	3 cut(s)	183, 580, 652
SspMI	CTAG	1 cut(s)	821
StyD4I	CCNGG	4 cut(s)	106, 250, 424, 447
StyI	CCWWGG	2 cut(s)	123, 938
TaaI	ACNGT	2 cut(s)	637, 976
TaiI	ACGT	3 cut(s)	307, 620, 845
TaqI	TCGA	2 cut(s)	39, 96
TasI	AATT	6 cut(s)	19, 111, 375, 668, 722, 743
TauI	GCSGC	1 cut(s)	700
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TscAI	CASTG	1 cut(s)	903
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	3 cut(s)	389, 566, 599
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	3 cut(s)	483, 715, 785
TspGWI	ACGGA	1 cut(s)	815
TspRI	CASTG	1 cut(s)	903
Tth111I	GACNNNGTC	1 cut(s)	803
VpaK11BI	GGWCC	1 cut(s)	452
XapI	RAATTY	3 cut(s)	19, 668, 743
XceI	RCATGY	1 cut(s)	764
XspI	CTAG	1 cut(s)	821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.