Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009889

Physical Location & Seq

Genomic Coordinates Reverse (-)

12117783 .. 12121755

Gene Structure 3973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18360.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGGGACCTTGATGACGAATTCCGACACCGCGGTGGCTATCGAGGGTCGAAGCGACGGCGTTTTGGGGTGTAATCTCAAGCGTGACAAGCTTATTATCGATACTGACCCTGGAATCGATGACACTATGGCAATCCTAATGGCATTTCAAACGCCGGAGTTGGAAATTTTGGGCTTGACAACAATATTTGGTAATGTCACCACAGAAGATGCCACTCGCAATGCCTTGCTTCTGTGTGAGATCGCAGGGCAGCCAGGTTTGCCTGTGGCGGAGGGAAGCCATGAGCCTCTGAAGGGTGGAAGGCCACGTGTTGCTGACTTTATCCATGGTTCTGATGGATTGGGGAATGTATTTATACCTCCTCCAGAAACGAAGAAAATTGAGAAGAATGCTGCTGAATTTCTAGTTGATACTGTGTCACAATATCCTGGTGAAGTATCAATACTTGCCCTCGGCCCATTGACAAACTTGGCATTGGCAATCAAAAGGGATTCTTCCTTTGTAAAAAAGGTAAAGAGGGTGGTTGTACTTGGCGGTGCTTTCTTTGCACTGGGAAATGTAAATCCTGCTGCTGAAGCAAATATTTATGGAGACCCAGAAGCAGCAGATGTTGTGTTTACATCTGGGGCTAACATTACTGTTGTTGGAATAAATATTACGACCCAAGTCAAGTTTACAGATTCTGACCTCCTTCAACTGCGGCAATCAAAAGGAAAGCATGTTCAATTCATAACCGACACATGTCAATTCTACAGAGATTGGCACGTAAAATCTGATAGTGTTTATGGGATTTTTCTTCATGACCCTGTCAGTTTTGTAGCAGTAGTCCGTCCTGATCTCTTCACATACAAGAAAGGGGTGGTGAGGGTTGAAACTCAGGGCATCTGTGTTGGGCACACACTGATGGATCAAGGACTAAAGAATTGGAATTCAAGCAATCCATGGACAGGCTATTCTCCTGTTGAAGTTGCTTGGACAGTCAACGTGGATGGAGTCCTTGATTATATAAAAGATCGACTGATGGCATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006152 GO:0006213 GO:0006218 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008477 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019439 GO:0034641 GO:0034655 GO:0034656 GO:0042278 GO:0042454 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0045437 GO:0046108 GO:0046131 GO:0046133 GO:0046135 GO:0046483 GO:0046700 GO:0047622 GO:0047724 GO:0050263 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:0072527 GO:0072529 GO:0072585 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00760 map00240 map00760

Pfam Domains

Protein Families

IU_nuc_hydro

Protein Analysis

344

Amino Acids

37.08

Weight (kDa)

5.11

Isoelectric Point (pI)

27.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IU_nuc_hydro	PF01156	31 - 260	1e-78	Inosine-uridine preferring nucleoside hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36310
fragaria_vesca	FvH4_6g18360 FvH4_6g18360 FvH4_6g18360
malus_domestica	MD12G1022900.v1.1 MD14G1019900.v1.1
prunus_persica	Prupe.7G113700_v2.0.a1 Prupe.7G113700_v2.0.a1 Prupe.7G113700_v2.0.a1 Prupe.7G113700_v2.0.a1
pyrus_communis	pycom12g02140 pycom14g01950
rosa_chinensis	RchiOBHm_Chr3g0472851
rosa_laevigata	RLG00000024051
rosa_roxburghii	Rroxscaffold_6G00408560
rosa_rugosa	Rorug03G0128100
rosa_samantha	Rh3AG180800 Rh3BG207000 Rh3CG204200 Rh3DG168900
rosa_wichuraiana	Rw3G016220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	32
AciI	CCGC	5 cut(s)	30, 32, 269, 534, 700
AclWI	GGATC	1 cut(s)	915
AcsI	RAATTY	4 cut(s)	19, 165, 398, 928
AcuI	CTGAAG	2 cut(s)	311, 594
AcvI	CACGTG	1 cut(s)	308
AfaI	GTAC	1 cut(s)	528
AfiI	CCNNNNNNNGG	2 cut(s)	293, 947
AflIII	ACRYGT	2 cut(s)	307, 740
AgsI	TTSAA	6 cut(s)	149, 695, 725, 872, 933, 965
AjnI	CCWGG	3 cut(s)	109, 253, 427
AleI	CACNNNNGTG	1 cut(s)	32
AloI	GAACNNNNNNTCC	2 cut(s)	705, 737
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	585
AlwI	GGATC	1 cut(s)	915
AlwNI	CAGNNNCTG	1 cut(s)	683
AoxI	GGCC	2 cut(s)	302, 454
ApeKI	GCWGC	4 cut(s)	250, 392, 569, 602
ApoI	RAATTY	4 cut(s)	19, 165, 398, 928
AspS9I	GGNCC	2 cut(s)	6, 455
AsuHPI	GGTGA	3 cut(s)	190, 443, 874
AvaII	GGWCC	1 cut(s)	6
BaeGI	GKGCMC	1 cut(s)	897
BarI	GAAGNNNNNNTAC	2 cut(s)	426, 458
BbrPI	CACGTG	1 cut(s)	308
BbvI	GCAGC	4 cut(s)	262, 379, 556, 614
BccI	CCATC	4 cut(s)	329, 898, 983, 1015
BceAI	ACGGC	1 cut(s)	73
BciT130I	CCWGG	3 cut(s)	111, 255, 429
BcoDI	GTCTC	1 cut(s)	585
BfaI	CTAG	1 cut(s)	404
BfmI	CTRYAG	1 cut(s)	751
BisI	GCNGC	5 cut(s)	251, 393, 570, 603, 701
BlsI	GCNGC	5 cut(s)	252, 394, 571, 604, 702
Bme1390I	CCNGG	3 cut(s)	111, 255, 429
Bme18I	GGWCC	1 cut(s)	6
BmgT120I	GGNCC	2 cut(s)	6, 455
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	3 cut(s)	111, 255, 429
BmrI	ACTGGG	1 cut(s)	560
BmsI	GCATC	2 cut(s)	199, 891
BmuI	ACTGGG	1 cut(s)	560
BoxI	GACNNNNGTC	2 cut(s)	665, 741
BpmI	CTGGAG	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	62
Bsa29I	ATCGAT	2 cut(s)	99, 117
BsaAI	YACGTR	2 cut(s)	308, 766
BsaI	GGTCTC	1 cut(s)	585
BsaJI	CCNNGG	5 cut(s)	30, 109, 325, 451, 941
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 947
Bse1I	ACTGG	1 cut(s)	555
Bse3DI	GCAATG	1 cut(s)	226
BseBI	CCWGG	3 cut(s)	111, 255, 429
BseCI	ATCGAT	2 cut(s)	99, 117
BseDI	CCNNGG	5 cut(s)	30, 109, 325, 451, 941
BseGI	GGATG	1 cut(s)	994
BseLI	CCNNNNNNNGG	2 cut(s)	293, 947
BseMI	GCAATG	1 cut(s)	226
BseMII	CTCAG	1 cut(s)	890
BseNI	ACTGG	1 cut(s)	555
BseRI	GAGGAG	1 cut(s)	351
BseSI	GKGCMC	1 cut(s)	897
BseXI	GCAGC	4 cut(s)	262, 379, 556, 614
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	2 cut(s)	304, 456
BshVI	ATCGAT	2 cut(s)	99, 117
BsiSI	CCGG	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	293, 947
BsmAI	GTCTC	1 cut(s)	585
BsmFI	GGGAC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	394
BsnI	GGCC	2 cut(s)	304, 456
Bso31I	GGTCTC	1 cut(s)	585
Bsp1286I	GDGCHC	1 cut(s)	897
Bsp143I	GATC	4 cut(s)	240, 835, 907, 1012
Bsp19I	CCATGG	2 cut(s)	325, 941
BspACI	CCGC	5 cut(s)	30, 32, 269, 534, 700
BspANI	GGCC	2 cut(s)	304, 456
BspCNI	CTCAG	1 cut(s)	889
BspDI	ATCGAT	2 cut(s)	99, 117
BspFNI	CGCG	1 cut(s)	32
BspHI	TCATGA	1 cut(s)	799
BspLI	GGNNCC	1 cut(s)	7
BspPI	GGATC	1 cut(s)	915
BspTNI	GGTCTC	1 cut(s)	585
BsrDI	GCAATG	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	555
BssECI	CCNNGG	5 cut(s)	30, 109, 325, 451, 941
BssMI	GATC	4 cut(s)	240, 835, 907, 1012
BssT1I	CCWWGG	2 cut(s)	325, 941
Bst2UI	CCWGG	3 cut(s)	111, 255, 429
Bst4CI	ACNGT	3 cut(s)	415, 640, 979
Bst6I	CTCTTC	1 cut(s)	845
BstBAI	YACGTR	2 cut(s)	308, 766
BstDEI	CTNAG	1 cut(s)	876
BstDSI	CCRYGG	3 cut(s)	30, 325, 941
BstF5I	GGATG	1 cut(s)	994
BstFNI	CGCG	1 cut(s)	32
BstKTI	GATC	4 cut(s)	243, 838, 910, 1015
BstMAI	GTCTC	1 cut(s)	585
BstMBI	GATC	4 cut(s)	240, 835, 907, 1012
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 259, 545, 575
BstNI	CCWGG	3 cut(s)	111, 255, 429
BstNSI	RCATGY	2 cut(s)	722, 744
BstPAI	GACNNNNGTC	2 cut(s)	665, 741
BstSCI	CCNGG	3 cut(s)	109, 253, 427
BstSFI	CTRYAG	1 cut(s)	751
BstSLI	GKGCMC	1 cut(s)	897
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	4 cut(s)	262, 379, 556, 614
Bsu15I	ATCGAT	2 cut(s)	99, 117
BsuRI	GGCC	2 cut(s)	304, 456
BsuTUI	ATCGAT	2 cut(s)	99, 117
BtgI	CCRYGG	3 cut(s)	30, 325, 941
BtsCI	GGATG	1 cut(s)	994
BtsIMutI	CAGTG	2 cut(s)	548, 899
CaiI	CAGNNNCTG	1 cut(s)	683
CciI	TCATGA	1 cut(s)	799
Cfr13I	GGNCC	2 cut(s)	6, 455
Cfr42I	CCGCGG	1 cut(s)	33
ClaI	ATCGAT	2 cut(s)	99, 117
Csp6I	GTAC	1 cut(s)	527
CviAII	CATG	6 cut(s)	281, 326, 719, 741, 800, 942
CviQI	GTAC	1 cut(s)	527
DdeI	CTNAG	1 cut(s)	876
DpnI	GATC	4 cut(s)	242, 837, 909, 1014
DpnII	GATC	4 cut(s)	240, 835, 907, 1012
Eam1104I	CTCTTC	1 cut(s)	845
EarI	CTCTTC	1 cut(s)	845
EciI	GGCGGA	1 cut(s)	284
Eco130I	CCWWGG	2 cut(s)	325, 941
Eco31I	GGTCTC	1 cut(s)	585
Eco47I	GGWCC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	311, 594
Eco72I	CACGTG	1 cut(s)	308
EcoO109I	RGGNCCY	1 cut(s)	6
EcoRI	GAATTC	2 cut(s)	19, 928
EcoRII	CCWGG	3 cut(s)	109, 253, 427
EcoT14I	CCWWGG	2 cut(s)	325, 941
ErhI	CCWWGG	2 cut(s)	325, 941
FaeI	CATG	6 cut(s)	284, 329, 722, 744, 803, 945
FalI	AAGNNNNNCTT	2 cut(s)	478, 510
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	6 cut(s)	280, 325, 718, 740, 799, 941
Fnu4HI	GCNGC	5 cut(s)	251, 393, 570, 603, 701
FokI	GGATG	1 cut(s)	1001
Fsp4HI	GCNGC	5 cut(s)	251, 393, 570, 603, 701
FspBI	CTAG	1 cut(s)	404
GluI	GCNGC	5 cut(s)	251, 393, 570, 603, 701
GsuI	CTGGAG	1 cut(s)	348
HaeIII	GGCC	2 cut(s)	304, 456
HapII	CCGG	1 cut(s)	155
Hin1II	CATG	6 cut(s)	284, 329, 722, 744, 803, 945
HincII	GTYRAC	1 cut(s)	982
HindII	GTYRAC	1 cut(s)	982
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	4 cut(s)	114, 491, 680, 993
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	3 cut(s)	190, 443, 874
Hpy166II	GTNNAC	3 cut(s)	618, 675, 982
Hpy188I	TCNGA	5 cut(s)	25, 291, 334, 685, 775
Hpy188III	TCNNGA	4 cut(s)	365, 800, 833, 1029
Hpy8I	GTNNAC	3 cut(s)	618, 675, 982
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	3 cut(s)	286, 294, 701
HpyCH4III	ACNGT	3 cut(s)	415, 640, 979
HpyCH4IV	ACGT	3 cut(s)	307, 765, 984
HpyCH4V	TGCA	1 cut(s)	548
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 259, 545, 575
HpyF3I	CTNAG	1 cut(s)	876
HpySE526I	ACGT	3 cut(s)	307, 765, 984
Hsp92II	CATG	6 cut(s)	284, 329, 722, 744, 803, 945
KspI	CCGCGG	1 cut(s)	33
Kzo9I	GATC	4 cut(s)	240, 835, 907, 1012
Lsp1109I	GCAGC	4 cut(s)	262, 379, 556, 614
LweI	GCATC	2 cut(s)	199, 891
MaeI	CTAG	1 cut(s)	404
MaeII	ACGT	3 cut(s)	307, 765, 984
MaeIII	GTNAC	3 cut(s)	83, 196, 417
MalI	GATC	4 cut(s)	242, 837, 909, 1014
MboI	GATC	4 cut(s)	240, 835, 907, 1012
MboII	GAAGA	6 cut(s)	218, 385, 397, 486, 788, 832
MhlI	GDGCHC	1 cut(s)	897
MluCI	AATT	8 cut(s)	19, 165, 378, 398, 725, 746, 922, 928
MlyI	GAGTC	1 cut(s)	1002
MmeI	TCCRAC	3 cut(s)	48, 141, 625
MnlI	CCTC	9 cut(s)	37, 265, 297, 369, 372, 461, 510, 698, 858
MslI	CAYNNNNRTG	2 cut(s)	32, 902
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	3 cut(s)	111, 255, 429
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	3 cut(s)	111, 255, 429
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	4 cut(s)	88, 259, 545, 575
NcoI	CCATGG	2 cut(s)	325, 941
NdeII	GATC	4 cut(s)	240, 835, 907, 1012
NlaIII	CATG	6 cut(s)	284, 329, 722, 744, 803, 945
NlaIV	GGNNCC	1 cut(s)	7
NmeAIII	GCCGAG	1 cut(s)	432
NmuCI	GTSAC	3 cut(s)	83, 196, 417
NspI	RCATGY	2 cut(s)	722, 744
OliI	CACNNNNGTG	1 cut(s)	32
PagI	TCATGA	1 cut(s)	799
PciI	ACATGT	1 cut(s)	740
PctI	GAATGC	1 cut(s)	394
PfeI	GAWTC	3 cut(s)	114, 491, 680
PflFI	GACNNNGTC	1 cut(s)	806
PkrI	GCNGC	5 cut(s)	252, 394, 571, 604, 702
PleI	GAGTC	1 cut(s)	1001
PmaCI	CACGTG	1 cut(s)	308
PmlI	CACGTG	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	1001
Ppu21I	YACGTR	2 cut(s)	308, 766
PpuMI	RGGWCCY	1 cut(s)	6
PscI	ACATGT	1 cut(s)	740
PshAI	GACNNNNGTC	2 cut(s)	665, 741
Psp5II	RGGWCCY	1 cut(s)	6
Psp6I	CCWGG	3 cut(s)	109, 253, 427
PspCI	CACGTG	1 cut(s)	308
PspGI	CCWGG	3 cut(s)	109, 253, 427
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	2 cut(s)	6, 455
PspPPI	RGGWCCY	1 cut(s)	6
PstNI	CAGNNNCTG	1 cut(s)	683
PsyI	GACNNNGTC	1 cut(s)	806
RsaI	GTAC	1 cut(s)	528
RsaNI	GTAC	1 cut(s)	527
RseI	CAYNNNNRTG	2 cut(s)	32, 902
SacII	CCGCGG	1 cut(s)	33
SatI	GCNGC	5 cut(s)	251, 393, 570, 603, 701
Sau3AI	GATC	4 cut(s)	240, 835, 907, 1012
Sau96I	GGNCC	2 cut(s)	6, 455
SchI	GAGTC	1 cut(s)	1002
ScrFI	CCNGG	3 cut(s)	111, 255, 429
SduI	GDGCHC	1 cut(s)	897
SetI	ASST	9 cut(s)	11, 93, 259, 310, 361, 513, 690, 768, 987
SfaNI	GCATC	2 cut(s)	199, 891
SfcI	CTRYAG	1 cut(s)	751
Sfr303I	CCGCGG	1 cut(s)	33
SgrBI	CCGCGG	1 cut(s)	33
SinI	GGWCC	1 cut(s)	6
SmiMI	CAYNNNNRTG	2 cut(s)	32, 902
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	8 cut(s)	19, 165, 378, 398, 725, 746, 922, 928
SsiI	CCGC	5 cut(s)	30, 32, 269, 534, 700
SspI	AATATT	3 cut(s)	186, 583, 655
SspMI	CTAG	1 cut(s)	404
StyD4I	CCNGG	3 cut(s)	109, 253, 427
StyI	CCWWGG	2 cut(s)	325, 941
TaaI	ACNGT	3 cut(s)	415, 640, 979
TaiI	ACGT	3 cut(s)	310, 768, 987
TaqI	TCGA	5 cut(s)	42, 49, 99, 117, 1015
TasI	AATT	8 cut(s)	19, 165, 378, 398, 725, 746, 922, 928
TatI	WGTACW	1 cut(s)	526
TauI	GCSGC	1 cut(s)	703
TfiI	GAWTC	3 cut(s)	114, 491, 680
TscAI	CASTG	2 cut(s)	555, 906
TseFI	GTSAC	3 cut(s)	83, 196, 417
TseI	GCWGC	4 cut(s)	250, 392, 569, 602
Tsp45I	GTSAC	3 cut(s)	83, 196, 417
TspDTI	ATGAA	2 cut(s)	718, 788
TspGWI	ACGGA	1 cut(s)	818
TspRI	CASTG	2 cut(s)	555, 906
Tth111I	GACNNNGTC	1 cut(s)	806
VpaK11BI	GGWCC	1 cut(s)	6
XapI	RAATTY	4 cut(s)	19, 165, 398, 928
XceI	RCATGY	2 cut(s)	722, 744
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332
XspI	CTAG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.