Protein CHUP1, chloroplastic
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G36650 |
| fragaria_vesca | FvH4_6g17340 |
| malus_domestica | MD12G1101400.v1.1 |
| prunus_persica | Prupe.7G122100_v2.0.a1 |
| pyrus_communis | pycom12g10010 pycom14g09380 |
| rosa_chinensis | RchiOBHm_Chr3g0471481 |
| rosa_laevigata | RLG00000024174 |
| rosa_multiflora | Rmu_sc0006582.1_g000006 Rmu_sc0030679.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00409910 |
| rosa_rugosa | Rorug03G0118000 |
| rosa_samantha | Rh3AG168000 Rh3BG193500 Rh3CG184000 Rh3DG182000 |
| rosa_wichuraiana | Rw3G015830 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 26 |
| AccBSI | CCGCTC | 1 cut(s) | 301 |
| AciI | CCGC | 2 cut(s) | 301, 1106 |
| AcsI | RAATTY | 1 cut(s) | 724 |
| AdeI | CACNNNGTG | 1 cut(s) | 862 |
| AfaI | GTAC | 1 cut(s) | 779 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 26, 885 |
| AgsI | TTSAA | 7 cut(s) | 266, 316, 598, 647, 729, 1048, 1061 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 575, 607 |
| Alw26I | GTCTC | 3 cut(s) | 117, 611, 847 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 86 |
| ApoI | RAATTY | 1 cut(s) | 724 |
| AspS9I | GGNCC | 1 cut(s) | 17 |
| AsuHPI | GGTGA | 5 cut(s) | 58, 162, 451, 754, 874 |
| AvaII | GGWCC | 1 cut(s) | 17 |
| BauI | CACGAG | 1 cut(s) | 857 |
| BbsI | GAAGAC | 1 cut(s) | 153 |
| BccI | CCATC | 5 cut(s) | 20, 277, 400, 733, 828 |
| BclI | TGATCA | 1 cut(s) | 940 |
| BcoDI | GTCTC | 3 cut(s) | 117, 611, 847 |
| BfaI | CTAG | 2 cut(s) | 102, 174 |
| Bme18I | GGWCC | 1 cut(s) | 17 |
| BmgT120I | GGNCC | 1 cut(s) | 17 |
| BmiI | GGNNCC | 1 cut(s) | 877 |
| BpiI | GAAGAC | 1 cut(s) | 153 |
| BpuEI | CTTGAG | 2 cut(s) | 383, 521 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 26, 885 |
| Bse118I | RCCGGY | 1 cut(s) | 43 |
| Bse1I | ACTGG | 1 cut(s) | 91 |
| Bse3DI | GCAATG | 1 cut(s) | 847 |
| BseGI | GGATG | 2 cut(s) | 10, 943 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 26, 885 |
| BseMI | GCAATG | 1 cut(s) | 847 |
| BseMII | CTCAG | 2 cut(s) | 250, 821 |
| BseNI | ACTGG | 1 cut(s) | 91 |
| BseRI | GAGGAG | 3 cut(s) | 45, 272, 1036 |
| BseYI | CCCAGC | 1 cut(s) | 925 |
| BsiSI | CCGG | 1 cut(s) | 44 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 26, 885 |
| BsmAI | GTCTC | 3 cut(s) | 117, 611, 847 |
| BsmBI | CGTCTC | 1 cut(s) | 611 |
| Bsp143I | GATC | 3 cut(s) | 319, 482, 940 |
| BspACI | CCGC | 2 cut(s) | 301, 1106 |
| BspCNI | CTCAG | 2 cut(s) | 249, 822 |
| BspHI | TCATGA | 1 cut(s) | 711 |
| BspLI | GGNNCC | 1 cut(s) | 877 |
| BsrBI | CCGCTC | 1 cut(s) | 301 |
| BsrDI | GCAATG | 1 cut(s) | 847 |
| BsrFI | RCCGGY | 1 cut(s) | 43 |
| BsrI | ACTGG | 1 cut(s) | 91 |
| BssAI | RCCGGY | 1 cut(s) | 43 |
| BssMI | GATC | 3 cut(s) | 319, 482, 940 |
| BssSI | CACGAG | 1 cut(s) | 857 |
| Bst2BI | CACGAG | 1 cut(s) | 857 |
| Bst4CI | ACNGT | 1 cut(s) | 548 |
| Bst6I | CTCTTC | 3 cut(s) | 768, 987, 1022 |
| BstDEI | CTNAG | 3 cut(s) | 236, 521, 830 |
| BstF5I | GGATG | 2 cut(s) | 10, 943 |
| BstKTI | GATC | 3 cut(s) | 322, 485, 943 |
| BstMAI | GTCTC | 3 cut(s) | 117, 611, 847 |
| BstMBI | GATC | 3 cut(s) | 319, 482, 940 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 298, 340, 1094, 1103 |
| BstV2I | GAAGAC | 1 cut(s) | 153 |
| BtgZI | GCGATG | 1 cut(s) | 419 |
| BtsCI | GGATG | 2 cut(s) | 10, 943 |
| CaiI | CAGNNNCTG | 1 cut(s) | 86 |
| CciI | TCATGA | 1 cut(s) | 711 |
| Cfr10I | RCCGGY | 1 cut(s) | 43 |
| Cfr13I | GGNCC | 1 cut(s) | 17 |
| Csp6I | GTAC | 1 cut(s) | 778 |
| CviAII | CATG | 6 cut(s) | 331, 664, 712, 920, 989, 1010 |
| CviQI | GTAC | 1 cut(s) | 778 |
| DdeI | CTNAG | 3 cut(s) | 236, 521, 830 |
| DpnI | GATC | 3 cut(s) | 321, 484, 942 |
| DpnII | GATC | 3 cut(s) | 319, 482, 940 |
| DraIII | CACNNNGTG | 1 cut(s) | 862 |
| Eam1104I | CTCTTC | 3 cut(s) | 768, 987, 1022 |
| EarI | CTCTTC | 3 cut(s) | 768, 987, 1022 |
| Eco47I | GGWCC | 1 cut(s) | 17 |
| Esp3I | CGTCTC | 1 cut(s) | 611 |
| FaeI | CATG | 6 cut(s) | 334, 667, 715, 923, 992, 1013 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 318, 350 |
| FatI | CATG | 6 cut(s) | 330, 663, 711, 919, 988, 1009 |
| FbaI | TGATCA | 1 cut(s) | 940 |
| FokI | GGATG | 2 cut(s) | 17, 950 |
| FspBI | CTAG | 2 cut(s) | 102, 174 |
| GsaI | CCCAGC | 1 cut(s) | 929 |
| HapII | CCGG | 1 cut(s) | 44 |
| Hin1II | CATG | 6 cut(s) | 334, 667, 715, 923, 992, 1013 |
| HincII | GTYRAC | 1 cut(s) | 556 |
| HindII | GTYRAC | 1 cut(s) | 556 |
| HindIII | AAGCTT | 3 cut(s) | 432, 518, 669 |
| HinfI | GANTC | 8 cut(s) | 158, 208, 214, 232, 252, 358, 997, 1013 |
| HpaII | CCGG | 1 cut(s) | 44 |
| HphI | GGTGA | 5 cut(s) | 58, 162, 451, 754, 874 |
| Hpy166II | GTNNAC | 1 cut(s) | 556 |
| Hpy188I | TCNGA | 4 cut(s) | 117, 213, 487, 736 |
| Hpy188III | TCNNGA | 6 cut(s) | 155, 249, 323, 362, 595, 712 |
| Hpy8I | GTNNAC | 1 cut(s) | 556 |
| Hpy99I | CGWCG | 1 cut(s) | 191 |
| HpyAV | CCTTC | 8 cut(s) | 265, 631, 641, 756, 787, 808, 1055, 1103 |
| HpyCH4III | ACNGT | 1 cut(s) | 548 |
| HpyCH4IV | ACGT | 1 cut(s) | 675 |
| HpyCH4V | TGCA | 3 cut(s) | 292, 688, 919 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 298, 340, 1094, 1103 |
| HpyF3I | CTNAG | 3 cut(s) | 236, 521, 830 |
| HpySE526I | ACGT | 1 cut(s) | 675 |
| Hsp92II | CATG | 6 cut(s) | 334, 667, 715, 923, 992, 1013 |
| Ksp22I | TGATCA | 1 cut(s) | 940 |
| Kzo9I | GATC | 3 cut(s) | 319, 482, 940 |
| LmnI | GCTCC | 3 cut(s) | 32, 259, 837 |
| LpnPI | CCDG | 8 cut(s) | 57, 72, 168, 262, 550, 842, 911, 944 |
| MaeI | CTAG | 2 cut(s) | 102, 174 |
| MaeII | ACGT | 1 cut(s) | 675 |
| MaeIII | GTNAC | 2 cut(s) | 133, 308 |
| MalI | GATC | 3 cut(s) | 321, 484, 942 |
| MbiI | CCGCTC | 1 cut(s) | 301 |
| MboI | GATC | 3 cut(s) | 319, 482, 940 |
| MluCI | AATT | 5 cut(s) | 374, 611, 704, 724, 785 |
| MlyI | GAGTC | 3 cut(s) | 167, 217, 367 |
| MseI | TTAA | 3 cut(s) | 242, 788, 825 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1008 |
| MspA1I | CMGCKG | 1 cut(s) | 14 |
| MspI | CCGG | 1 cut(s) | 44 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 298, 340, 1094, 1103 |
| NdeII | GATC | 3 cut(s) | 319, 482, 940 |
| NlaIII | CATG | 6 cut(s) | 334, 667, 715, 923, 992, 1013 |
| NlaIV | GGNNCC | 1 cut(s) | 877 |
| PagI | TCATGA | 1 cut(s) | 711 |
| PfeI | GAWTC | 5 cut(s) | 214, 232, 252, 997, 1013 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 26 |
| PleI | GAGTC | 3 cut(s) | 166, 216, 366 |
| PpsI | GAGTC | 3 cut(s) | 166, 216, 366 |
| PspFI | CCCAGC | 1 cut(s) | 925 |
| PspN4I | GGNNCC | 1 cut(s) | 877 |
| PspPI | GGNCC | 1 cut(s) | 17 |
| PstNI | CAGNNNCTG | 1 cut(s) | 86 |
| PvuII | CAGCTG | 1 cut(s) | 14 |
| RsaI | GTAC | 1 cut(s) | 779 |
| RsaNI | GTAC | 1 cut(s) | 778 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1008 |
| SaqAI | TTAA | 3 cut(s) | 242, 788, 825 |
| Sau3AI | GATC | 3 cut(s) | 319, 482, 940 |
| Sau96I | GGNCC | 1 cut(s) | 17 |
| SchI | GAGTC | 3 cut(s) | 167, 217, 367 |
| SinI | GGWCC | 1 cut(s) | 17 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1008 |
| SmlI | CTYRAG | 2 cut(s) | 362, 500 |
| SmoI | CTYRAG | 2 cut(s) | 362, 500 |
| Sse9I | AATT | 5 cut(s) | 374, 611, 704, 724, 785 |
| SsiI | CCGC | 2 cut(s) | 301, 1106 |
| SspMI | CTAG | 2 cut(s) | 102, 174 |
| TaaI | ACNGT | 1 cut(s) | 548 |
| TaiI | ACGT | 1 cut(s) | 678 |
| TaqI | TCGA | 3 cut(s) | 255, 297, 1019 |
| TasI | AATT | 5 cut(s) | 374, 611, 704, 724, 785 |
| TfiI | GAWTC | 5 cut(s) | 214, 232, 252, 997, 1013 |
| Tru1I | TTAA | 3 cut(s) | 242, 788, 825 |
| Tru9I | TTAA | 3 cut(s) | 242, 788, 825 |
| TspDTI | ATGAA | 9 cut(s) | 53, 135, 156, 624, 700, 728, 1005, 1026, 1052 |
| TspGWI | ACGGA | 1 cut(s) | 377 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 26 |
| VpaK11BI | GGWCC | 1 cut(s) | 17 |
| XapI | RAATTY | 1 cut(s) | 724 |
| XspI | CTAG | 2 cut(s) | 102, 174 |