Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009456

Physical Location & Seq

Genomic Coordinates Forward (+)

9581053 .. 9583932

Gene Structure 2880 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0118000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCGAAAGTCTTTTAAGGATTCGCTTAAGGCGCTTGAAGCTGATATTCAGTTTGCCAATACTCTGGCGTCTGATTATCCAAGAGAATATGATGGGGCTTGCCTCCAAATGAGATTATCATACAGCCCCGCCGCTCAATTCTTTCTGTTTCTTATTCAGTGGACTGATTGTCACCTTGCCGGTGCCTTAGGATTGCTTAGAATTCTTATATACAGGGCATATGAGGATGGGAAGACCACCATGTCAATTCATGAAAGAAAAGCTAGTTTAAAAGAGTTCTACAGTGTAATATTTCCCTCATTATTGCAACTTCAAAGGGGAATGACTGATGTAGAAGAGCGGAAACAGAAAGAAATCTGTTCCAAGTACAAGACAAGAGATGAGACGGACAAAGGAAAGCTCTCCGAAATTGAGTTGGAGCGAGAAGAAGAATGTGGTATTTGTATGGAGATGAACGGCAAGGTCGTATTGCCCAATTGCAGTCACTCTTTGTGTATAAAGTGCTATCGGAACTGGCGGACACGCTCTCAGTCCTGCCCCTTCTGCCGAGACAGCCTCAAAAGAGTTGACTCATGTGAACTTTGGATCTACACTGGCAACAATGAGATTGTTGACATGTCTGCAATCTCTAGGGAGAATTTGAAAAGACTATTTATCTACATTGATAAGCTGCCTCCTCTTGTTCCAAAGCATGGGGTTGTTTCTTATGACCTTTATCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

240

Amino Acids

27.96

Weight (kDa)

8.23

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	142 - 188	1.6e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	144 - 183	7.9e-08	Ring finger domain
zf-RING_5	PF14634	144 - 183	8.1e-06	zinc-RING finger domain
zf-C3HC4	PF00097	145 - 182	4.7e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10060
fragaria_vesca	FvH4_6g17331
malus_domestica	MD12G1101900.v1.1
pyrus_communis	pycom12g10030
rosa_chinensis	RchiOBHm_Chr1g0340031 RchiOBHm_Chr3g0471471
rosa_laevigata	RLG00000008643 RLG00000024175
rosa_multiflora	Rmu_sc0006582.1_g000007
rosa_roxburghii	Rroxscaffold_6G00409920
rosa_rugosa	Rorug02G0192700 Rorug02G0192700 Rorug02G0192700 Rorug02G0192800 Rorug03G0118000
rosa_samantha	Rh2CG297900 Rh3BG193400 Rh3CG183900 Rh3CG287700 Rh3DG182100
rosa_wichuraiana	Rw1G012870 Rw3G015820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	241
AccB1I	GGYRCC	1 cut(s)	182
AccB7I	CCANNNNNTGG	1 cut(s)	692
AccBSI	CCGCTC	2 cut(s)	134, 340
AciI	CCGC	4 cut(s)	129, 132, 340, 517
AclWI	GGATC	1 cut(s)	593
AcsI	RAATTY	2 cut(s)	201, 637
AcyI	GRCGYC	1 cut(s)	68
AfaI	GTAC	1 cut(s)	368
AfiI	CCNNNNNNNGG	1 cut(s)	692
AflII	CTTAAG	1 cut(s)	26
AflIII	ACRYGT	1 cut(s)	615
AgsI	TTSAA	3 cut(s)	38, 314, 643
AhdI	GACNNNNNGTC	1 cut(s)	168
AluBI	AGCT	4 cut(s)	41, 263, 400, 670
AluI	AGCT	4 cut(s)	41, 263, 400, 670
Alw26I	GTCTC	2 cut(s)	377, 543
AlwI	GGATC	1 cut(s)	593
ApeKI	GCWGC	1 cut(s)	670
ApoI	RAATTY	2 cut(s)	201, 637
AspLEI	GCGC	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	164
AxyI	CCTNAGG	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	657
BccI	CCATC	2 cut(s)	86, 221
BceAI	ACGGC	1 cut(s)	472
BcoDI	GTCTC	2 cut(s)	377, 543
BfaI	CTAG	2 cut(s)	264, 630
BfmI	CTRYAG	1 cut(s)	280
BfoI	RGCGCY	1 cut(s)	35
BfrI	CTTAAG	1 cut(s)	26
BisI	GCNGC	2 cut(s)	132, 671
BlsI	GCNGC	2 cut(s)	133, 672
BmeRI	GACNNNNNGTC	1 cut(s)	168
BmiI	GGNNCC	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	239
BplI	GAGNNNNNCTC	2 cut(s)	540, 572
Bsa29I	ATCGAT	1 cut(s)	718
BsaHI	GRCGYC	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	692
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	2 cut(s)	518, 598
Bse21I	CCTNAGG	1 cut(s)	187
BseCI	ATCGAT	1 cut(s)	718
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	692
BseMII	CTCAG	1 cut(s)	542
BseNI	ACTGG	2 cut(s)	518, 598
BseRI	GAGGAG	1 cut(s)	666
BseXI	GCAGC	1 cut(s)	657
BshNI	GGYRCC	1 cut(s)	182
BshVI	ATCGAT	1 cut(s)	718
BsiSI	CCGG	1 cut(s)	180
BslI	CCNNNNNNNGG	1 cut(s)	692
BsmAI	GTCTC	2 cut(s)	377, 543
BsmBI	CGTCTC	1 cut(s)	377
Bsp143I	GATC	1 cut(s)	585
BspACI	CCGC	4 cut(s)	129, 132, 340, 517
BspCNI	CTCAG	1 cut(s)	541
BspDI	ATCGAT	1 cut(s)	718
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	184
BspPI	GGATC	1 cut(s)	593
BspQI	GCTCTTC	1 cut(s)	330
BspT107I	GGYRCC	1 cut(s)	182
BspTI	CTTAAG	1 cut(s)	26
BsrBI	CCGCTC	2 cut(s)	134, 340
BsrFI	RCCGGY	1 cut(s)	179
BsrI	ACTGG	2 cut(s)	518, 598
BssAI	RCCGGY	1 cut(s)	179
BssMI	GATC	1 cut(s)	585
BssNI	GRCGYC	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	284
Bst6I	CTCTTC	1 cut(s)	330
BstACI	GRCGYC	1 cut(s)	68
BstAFI	CTTAAG	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	3 cut(s)	187, 197, 528
BstF5I	GGATG	1 cut(s)	232
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	1 cut(s)	588
BstMAI	GTCTC	2 cut(s)	377, 543
BstMBI	GATC	1 cut(s)	585
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 38, 543, 552
BstNSI	RCATGY	1 cut(s)	619
BstSFI	CTRYAG	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	657
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	585
BstXI	CCANNNNNNTGG	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	585
Bsu15I	ATCGAT	1 cut(s)	718
Bsu36I	CCTNAGG	1 cut(s)	187
BsuTUI	ATCGAT	1 cut(s)	718
BtsCI	GGATG	1 cut(s)	232
BtsIMutI	CAGTG	3 cut(s)	164, 289, 591
Cac8I	GCNNGC	1 cut(s)	100
CciI	TCATGA	1 cut(s)	250
CfoI	GCGC	1 cut(s)	34
Cfr10I	RCCGGY	1 cut(s)	179
ClaI	ATCGAT	1 cut(s)	718
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	1 cut(s)	367
CviAII	CATG	5 cut(s)	241, 251, 573, 616, 692
CviJI	RGCY	7 cut(s)	41, 98, 126, 263, 400, 555, 670
CviKI_1	RGCY	7 cut(s)	41, 98, 126, 263, 400, 555, 670
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	3 cut(s)	187, 197, 528
DpnI	GATC	1 cut(s)	587
DpnII	GATC	1 cut(s)	585
DraI	TTTAAA	1 cut(s)	270
DrdI	GACNNNNNNGTC	1 cut(s)	241
DriI	GACNNNNNGTC	1 cut(s)	168
DseDI	GACNNNNNNGTC	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	330
Eam1105I	GACNNNNNGTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	330
EciI	GGCGGA	1 cut(s)	532
Eco81I	CCTNAGG	1 cut(s)	187
EcoRI	GAATTC	1 cut(s)	201
Esp3I	CGTCTC	1 cut(s)	377
FaeI	CATG	5 cut(s)	244, 254, 576, 619, 695
FatI	CATG	5 cut(s)	240, 250, 572, 615, 691
FauI	CCCGC	1 cut(s)	136
FauNDI	CATATG	1 cut(s)	220
Fnu4HI	GCNGC	2 cut(s)	132, 671
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	2 cut(s)	132, 671
FspBI	CTAG	2 cut(s)	264, 630
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	2 cut(s)	132, 671
HaeII	RGCGCY	1 cut(s)	35
HapII	CCGG	1 cut(s)	180
HgaI	GACGC	1 cut(s)	57
HhaI	GCGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	68
Hin1II	CATG	5 cut(s)	244, 254, 576, 619, 695
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HincII	GTYRAC	2 cut(s)	568, 613
HindII	GTYRAC	2 cut(s)	568, 613
HinfI	GANTC	2 cut(s)	20, 569
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	4 cut(s)	162, 568, 578, 613
Hpy188I	TCNGA	3 cut(s)	73, 406, 510
Hpy188III	TCNNGA	1 cut(s)	251
Hpy8I	GTNNAC	4 cut(s)	162, 568, 578, 613
HpyAV	CCTTC	1 cut(s)	550
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4V	TGCA	3 cut(s)	307, 480, 623
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 38, 543, 552
HpyF3I	CTNAG	3 cut(s)	187, 197, 528
Hsp92I	GRCGYC	1 cut(s)	68
Hsp92II	CATG	5 cut(s)	244, 254, 576, 619, 695
HspAI	GCGC	1 cut(s)	32
Kzo9I	GATC	1 cut(s)	585
LguI	GCTCTTC	1 cut(s)	330
LmnI	GCTCC	1 cut(s)	418
LpnPI	CCDG	6 cut(s)	50, 193, 199, 499, 547, 579
Lsp1109I	GCAGC	1 cut(s)	657
MaeI	CTAG	2 cut(s)	264, 630
MaeIII	GTNAC	2 cut(s)	170, 482
MalI	GATC	1 cut(s)	587
MbiI	CCGCTC	2 cut(s)	134, 340
MboI	GATC	1 cut(s)	585
MboII	GAAGA	4 cut(s)	244, 347, 437, 440
MfeI	CAATTG	1 cut(s)	475
MflI	RGATCY	1 cut(s)	585
MluCI	AATT	6 cut(s)	137, 201, 246, 408, 475, 637
MlyI	GAGTC	1 cut(s)	563
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	6 cut(s)	113, 217, 307, 566, 684, 687
MseI	TTAA	3 cut(s)	15, 27, 269
MspCI	CTTAAG	1 cut(s)	26
MspI	CCGG	1 cut(s)	180
MunI	CAATTG	1 cut(s)	475
MwoI	GCNNNNNNNGC	4 cut(s)	31, 38, 543, 552
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	1 cut(s)	585
NlaIII	CATG	5 cut(s)	244, 254, 576, 619, 695
NlaIV	GGNNCC	1 cut(s)	184
NmeAIII	GCCGAG	1 cut(s)	572
NmuCI	GTSAC	2 cut(s)	170, 482
NspI	RCATGY	1 cut(s)	619
PagI	TCATGA	1 cut(s)	250
PciI	ACATGT	1 cut(s)	615
PciSI	GCTCTTC	1 cut(s)	330
PcsI	WCGNNNNNNNCGW	1 cut(s)	462
PfeI	GAWTC	1 cut(s)	20
PflMI	CCANNNNNTGG	1 cut(s)	692
PkrI	GCNGC	2 cut(s)	133, 672
PleI	GAGTC	1 cut(s)	563
PpsI	GAGTC	1 cut(s)	563
PscI	ACATGT	1 cut(s)	615
PspN4I	GGNNCC	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	585
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
SapI	GCTCTTC	1 cut(s)	330
SaqAI	TTAA	3 cut(s)	15, 27, 269
SatI	GCNGC	2 cut(s)	132, 671
Sau3AI	GATC	1 cut(s)	585
SchI	GAGTC	1 cut(s)	563
SetI	ASST	7 cut(s)	43, 177, 265, 402, 465, 672, 714
SfcI	CTRYAG	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	6 cut(s)	137, 201, 246, 408, 475, 637
SsiI	CCGC	4 cut(s)	129, 132, 340, 517
SspI	AATATT	1 cut(s)	291
SspMI	CTAG	2 cut(s)	264, 630
TaaI	ACNGT	1 cut(s)	284
TaqI	TCGA	1 cut(s)	718
TasI	AATT	6 cut(s)	137, 201, 246, 408, 475, 637
TatI	WGTACW	1 cut(s)	366
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	3 cut(s)	15, 27, 269
Tru9I	TTAA	3 cut(s)	15, 27, 269
TscAI	CASTG	3 cut(s)	164, 289, 598
TseFI	GTSAC	2 cut(s)	170, 482
TseI	GCWGC	1 cut(s)	670
Tsp45I	GTSAC	2 cut(s)	170, 482
TspDTI	ATGAA	3 cut(s)	239, 267, 467
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	3 cut(s)	164, 289, 598
Van91I	CCANNNNNTGG	1 cut(s)	692
Vha464I	CTTAAG	1 cut(s)	26
XapI	RAATTY	2 cut(s)	201, 637
XceI	RCATGY	1 cut(s)	619
XspI	CTAG	2 cut(s)	264, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.