Rh2CG297900

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0009456
Physical Location & Seq
Reverse (-)
34422831 .. 34440264
17434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG297900.1

Sequence Viewer

Length: 585 bp
ATGAATTTCCTGCAACGAAGGTACTATGACTTGAAGTACGGTTGTGATCAAGTTCATTATGTTGCAAAGTGGAAGGGTATCACTTTCATGACAAGTAGACAAGGACTTGGTTTAGGAACGCCATACGGATTTGATGTAGGCCAATTTGAGAAGGGATCAGTCCTCAAGGGGTTAGATATTGGTGTAAAAGGCATGCGGGTAGGAGGCCCGCGATTGCTTATAGTTCCTCCTGAGCTGGCATATGGAAGCAAAGGAGTCCAAGAAATCCCTCCAAATGCAACAATAGAGCCTTTTGAGTTTGATGATATAACAAGCTTTTTGAATTGTTCCAAAATAAATGATGTCCATATGGTCAAGTCTCTAATTGATGATGCATCATCAGGCATTTCTATCAGTGCCCAAGGGAACTCTCTTAGTGTAAATGCCGCTGGGATCAACTCACTGCCTTCCATGTTTCAGGCTGGTAGTACACCCCCACTTTCACCTTTAAGTTCCTCCAGCTCTCCACACTTTTCAATGCCGAAAACCAGTCCTTCTTCACTAAGCTCTCGTTTTATTTACCTTTGTTATCCATCAGCATTGTGA

Protein Analysis

194

Amino Acids

20.9

Weight (kDa)

8.4

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 17 - 95 2.4e-16 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 97
AccII CGCG 1 cut(s) 211
AciI CCGC 3 cut(s) 196, 209, 426
AclWI GGATC 2 cut(s) 163, 440
AcsI RAATTY 1 cut(s) 4
AfaI GTAC 3 cut(s) 23, 38, 469
AgsI TTSAA 3 cut(s) 34, 322, 516
AluBI AGCT 4 cut(s) 235, 315, 501, 546
AluI AGCT 4 cut(s) 235, 315, 501, 546
Alw26I GTCTC 1 cut(s) 363
AlwI GGATC 2 cut(s) 163, 440
AoxI GGCC 2 cut(s) 139, 205
ApoI RAATTY 1 cut(s) 4
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 474
BaeGI GKGCMC 1 cut(s) 400
BccI CCATC 1 cut(s) 580
BclI TGATCA 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 363
BisI GCNGC 1 cut(s) 426
BlsI GCNGC 1 cut(s) 427
BmgT120I GGNCC 1 cut(s) 206
BmsI GCATC 2 cut(s) 361, 383
BpmI CTGGAG 1 cut(s) 481
Bpu10I CCTNAGC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 400
Bse1I ACTGG 1 cut(s) 528
BseDI CCNNGG 1 cut(s) 400
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 528
BseSI GKGCMC 1 cut(s) 400
BseYI CCCAGC 1 cut(s) 428
Bsh1236I CGCG 1 cut(s) 211
BshFI GGCC 2 cut(s) 141, 207
BsmAI GTCTC 1 cut(s) 363
BsnI GGCC 2 cut(s) 141, 207
Bsp1286I GDGCHC 1 cut(s) 400
Bsp143I GATC 3 cut(s) 46, 155, 432
BspACI CCGC 3 cut(s) 196, 209, 426
BspANI GGCC 2 cut(s) 141, 207
BspCNI CTCAG 1 cut(s) 223
BspFNI CGCG 1 cut(s) 211
BspHI TCATGA 1 cut(s) 87
BspPI GGATC 2 cut(s) 163, 440
BsrI ACTGG 1 cut(s) 528
BssECI CCNNGG 1 cut(s) 400
BssMI GATC 3 cut(s) 46, 155, 432
BssT1I CCWWGG 1 cut(s) 400
Bst4CI ACNGT 1 cut(s) 41
BstC8I GCNNGC 3 cut(s) 194, 209, 237
BstDEI CTNAG 3 cut(s) 231, 413, 542
BstFNI CGCG 1 cut(s) 211
BstKTI GATC 3 cut(s) 49, 158, 435
BstMAI GTCTC 1 cut(s) 363
BstMBI GATC 3 cut(s) 46, 155, 432
BstNSI RCATGY 1 cut(s) 196
BstSLI GKGCMC 1 cut(s) 400
BstUI CGCG 1 cut(s) 211
BsuRI GGCC 2 cut(s) 141, 207
BtsI GCAGTG 1 cut(s) 440
BtsIMutI CAGTG 2 cut(s) 400, 440
Cac8I GCNNGC 3 cut(s) 194, 209, 237
CciI TCATGA 1 cut(s) 87
Cfr13I GGNCC 1 cut(s) 206
Csp6I GTAC 3 cut(s) 22, 37, 468
CviAII CATG 3 cut(s) 88, 193, 451
CviJI RGCY 8 cut(s) 141, 207, 235, 289, 315, 461, 501, 546
CviKI_1 RGCY 8 cut(s) 141, 207, 235, 289, 315, 461, 501, 546
CviQI GTAC 3 cut(s) 22, 37, 468
DdeI CTNAG 3 cut(s) 231, 413, 542
DpnI GATC 3 cut(s) 48, 157, 434
DpnII GATC 3 cut(s) 46, 155, 432
Eco130I CCWWGG 1 cut(s) 400
EcoT14I CCWWGG 1 cut(s) 400
EcoT22I ATGCAT 1 cut(s) 376
ErhI CCWWGG 1 cut(s) 400
FaeI CATG 3 cut(s) 91, 196, 454
FatI CATG 3 cut(s) 87, 192, 450
FauI CCCGC 2 cut(s) 189, 216
FauNDI CATATG 2 cut(s) 241, 348
FbaI TGATCA 1 cut(s) 46
FblI GTMKAC 1 cut(s) 97
Fnu4HI GCNGC 1 cut(s) 426
Fsp4HI GCNGC 1 cut(s) 426
GluI GCNGC 1 cut(s) 426
GsaI CCCAGC 1 cut(s) 432
GsuI CTGGAG 1 cut(s) 481
HaeIII GGCC 2 cut(s) 141, 207
Hin1II CATG 3 cut(s) 91, 196, 454
HindIII AAGCTT 1 cut(s) 313
HinfI GANTC 1 cut(s) 255
HphI GGTGA 1 cut(s) 474
Hpy166II GTNNAC 2 cut(s) 98, 470
Hpy188III TCNNGA 2 cut(s) 88, 230
Hpy8I GTNNAC 2 cut(s) 98, 470
HpyAV CCTTC 5 cut(s) 12, 67, 145, 456, 543
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4V TGCA 4 cut(s) 13, 65, 278, 374
HpyF3I CTNAG 3 cut(s) 231, 413, 542
Hsp92II CATG 3 cut(s) 91, 196, 454
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 3 cut(s) 46, 155, 432
LpnPI CCDG 9 cut(s) 23, 221, 243, 366, 414, 443, 447, 511, 541
LweI GCATC 2 cut(s) 361, 383
MalI GATC 3 cut(s) 48, 157, 434
MboI GATC 3 cut(s) 46, 155, 432
MboII GAAGA 1 cut(s) 528
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 4 cut(s) 4, 143, 322, 363
MlyI GAGTC 1 cut(s) 264
MnlI CCTC 5 cut(s) 173, 197, 237, 279, 505
Mph1103I ATGCAT 1 cut(s) 376
MseI TTAA 1 cut(s) 488
MslI CAYNNNNRTG 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 428
MvnI CGCG 1 cut(s) 211
NdeI CATATG 2 cut(s) 241, 348
NdeII GATC 3 cut(s) 46, 155, 432
NlaIII CATG 3 cut(s) 91, 196, 454
NsiI ATGCAT 1 cut(s) 376
NspI RCATGY 1 cut(s) 196
PaeI GCATGC 1 cut(s) 196
PagI TCATGA 1 cut(s) 87
PkrI GCNGC 1 cut(s) 427
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
PspFI CCCAGC 1 cut(s) 428
PspPI GGNCC 1 cut(s) 206
RsaI GTAC 3 cut(s) 23, 38, 469
RsaNI GTAC 3 cut(s) 22, 37, 468
RseI CAYNNNNRTG 1 cut(s) 86
SaqAI TTAA 1 cut(s) 488
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 3 cut(s) 46, 155, 432
Sau96I GGNCC 1 cut(s) 206
SchI GAGTC 1 cut(s) 264
SduI GDGCHC 1 cut(s) 400
SetI ASST 7 cut(s) 23, 237, 317, 487, 503, 548, 564
SfaNI GCATC 2 cut(s) 361, 383
SmiMI CAYNNNNRTG 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
SphI GCATGC 1 cut(s) 196
Sse9I AATT 4 cut(s) 4, 143, 322, 363
SsiI CCGC 3 cut(s) 196, 209, 426
StyI CCWWGG 1 cut(s) 400
TaaI ACNGT 1 cut(s) 41
TasI AATT 4 cut(s) 4, 143, 322, 363
TatI WGTACW 1 cut(s) 467
TauI GCSGC 1 cut(s) 428
Tru1I TTAA 1 cut(s) 488
Tru9I TTAA 1 cut(s) 488
TscAI CASTG 2 cut(s) 400, 447
TspDTI ATGAA 3 cut(s) 17, 44, 76
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 2 cut(s) 400, 447
XapI RAATTY 1 cut(s) 4
XceI RCATGY 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 97
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.