Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006582.1

Orthogroup ID

OG0009456

Physical Location & Seq

Genomic Coordinates Forward (+)

44634 .. 48410

Gene Structure 3777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006582.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atggagctcttctttcttccttgccaccatcacaacccaactctgcttcacaagcctttcttctctatacccattacaagcaagaggctccccaagaggaattcacaggtcttaccatgtcaatgctcatcttcttcctcatcagataatgatacaaaaccaacccaccaatcattacactctgagggaaggagggctttgattggctctctcttaacatcagctgctggcatttatgtgtgtgatgtggctgaggctgtcagtacaagtaggagagctctaagaggatcaaaaatacctgaggaagaatttacaacccttcctaatggtctaaagtactatgacttgaaggttgggaatggaactgaggcagtgacaggatcccgggttgcagttcattatgttgcaaagtggaagggtatcactttcatgacaagtagacaaggacttggtgttggtggaggaacgccatacggatttgatgtaggccaatctgagaagggatcagtcctcaaggggttagatattggtgtaaaaggcatgcgggtaggaggccagcgattgcttatagttcctcctgagctggcatatggaagcaaaggagtccaagaaatccctccaaatgcaacaatagagttggacgttgaattactggccatcaaacaaagcccatttgggtctcctgtaaaaattgttgaaggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

234

Amino Acids

25.11

Weight (kDa)

9.16

Isoelectric Point (pI)

50.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10060
fragaria_vesca	FvH4_6g17331
malus_domestica	MD12G1101900.v1.1
pyrus_communis	pycom12g10030
rosa_chinensis	RchiOBHm_Chr1g0340031 RchiOBHm_Chr3g0471471
rosa_laevigata	RLG00000008643 RLG00000024175
rosa_multiflora	Rmu_sc0006582.1_g000007
rosa_roxburghii	Rroxscaffold_6G00409920
rosa_rugosa	Rorug02G0192700 Rorug02G0192700 Rorug02G0192700 Rorug02G0192800 Rorug03G0118000
rosa_samantha	Rh2CG297900 Rh3BG193400 Rh3CG183900 Rh3CG287700 Rh3DG182100
rosa_wichuraiana	Rw1G012870 Rw3G015820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	439
AciI	CCGC	1 cut(s)	544
AclWI	GGATC	4 cut(s)	295, 375, 388, 511
AcoI	YGGCCR	1 cut(s)	654
AcsI	RAATTY	2 cut(s)	100, 308
AfaI	GTAC	2 cut(s)	265, 338
AgsI	TTSAA	3 cut(s)	349, 647, 698
AluBI	AGCT	4 cut(s)	7, 224, 278, 583
AluI	AGCT	4 cut(s)	7, 224, 278, 583
Alw21I	GWGCWC	2 cut(s)	9, 280
Alw26I	GTCTC	1 cut(s)	684
AlwI	GGATC	4 cut(s)	295, 375, 388, 511
AlwNI	CAGNNNCTG	1 cut(s)	227
Ama87I	CYCGRG	1 cut(s)	384
AoxI	GGCC	3 cut(s)	487, 553, 654
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	2 cut(s)	100, 308
AsuC2I	CCSGG	2 cut(s)	385, 386
AvaI	CYCGRG	1 cut(s)	384
AxyI	CCTNAGG	1 cut(s)	300
BalI	TGGCCA	1 cut(s)	656
BamHI	GGATCC	1 cut(s)	380
BanII	GRGCYC	2 cut(s)	9, 280
Bbv12I	GWGCWC	2 cut(s)	9, 280
BbvCI	CCTCAGC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	2 cut(s)	36, 665
BcnI	CCSGG	2 cut(s)	385, 386
BcoDI	GTCTC	1 cut(s)	684
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
BmcAI	AGTACT	1 cut(s)	338
Bme1390I	CCNGG	2 cut(s)	385, 386
BmeT110I	CYCGRG	1 cut(s)	384
BmiI	GGNNCC	2 cut(s)	89, 382
BmrFI	CCNGG	2 cut(s)	385, 386
Bpu10I	CCTNAGC	2 cut(s)	252, 579
BpuEI	CTTGAG	1 cut(s)	497
BpuMI	CCSGG	2 cut(s)	385, 386
BsaI	GGTCTC	1 cut(s)	684
BsaJI	CCNNGG	1 cut(s)	384
Bse1I	ACTGG	1 cut(s)	657
Bse21I	CCTNAGG	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	384
BseMII	CTCAG	6 cut(s)	174, 243, 291, 357, 486, 570
BseNI	ACTGG	1 cut(s)	657
BseXI	GCAGC	1 cut(s)	211
BshFI	GGCC	3 cut(s)	489, 555, 656
BsiHKAI	GWGCWC	2 cut(s)	9, 280
BsiHKCI	CYCGRG	1 cut(s)	384
BsiSI	CCGG	1 cut(s)	385
BsmAI	GTCTC	1 cut(s)	684
BsnI	GGCC	3 cut(s)	489, 555, 656
Bso31I	GGTCTC	1 cut(s)	684
BsoBI	CYCGRG	1 cut(s)	384
Bsp1286I	GDGCHC	2 cut(s)	9, 280
Bsp143I	GATC	3 cut(s)	287, 380, 503
BspACI	CCGC	1 cut(s)	544
BspANI	GGCC	3 cut(s)	489, 555, 656
BspCNI	CTCAG	6 cut(s)	175, 244, 292, 358, 487, 571
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	2 cut(s)	89, 382
BspPI	GGATC	4 cut(s)	295, 375, 388, 511
BspQI	GCTCTTC	1 cut(s)	14
BspTNI	GGTCTC	1 cut(s)	684
BsrI	ACTGG	1 cut(s)	657
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	3 cut(s)	287, 380, 503
Bst6I	CTCTTC	1 cut(s)	14
BstC8I	GCNNGC	4 cut(s)	229, 542, 557, 585
BstDEI	CTNAG	7 cut(s)	183, 252, 281, 300, 366, 495, 579
BstKTI	GATC	3 cut(s)	290, 383, 506
BstMAI	GTCTC	1 cut(s)	684
BstMBI	GATC	3 cut(s)	287, 380, 503
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstNSI	RCATGY	1 cut(s)	544
BstSCI	CCNGG	2 cut(s)	383, 384
BstV1I	GCAGC	1 cut(s)	211
BstX2I	RGATCY	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	380
Bsu36I	CCTNAGG	1 cut(s)	300
BsuRI	GGCC	3 cut(s)	489, 555, 656
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	1 cut(s)	378
Cac8I	GCNNGC	4 cut(s)	229, 542, 557, 585
CaiI	CAGNNNCTG	1 cut(s)	227
CciI	TCATGA	1 cut(s)	429
Cfr9I	CCCGGG	1 cut(s)	384
Csp6I	GTAC	2 cut(s)	264, 337
CviAII	CATG	3 cut(s)	117, 430, 541
CviQI	GTAC	2 cut(s)	264, 337
DdeI	CTNAG	7 cut(s)	183, 252, 281, 300, 366, 495, 579
DpnI	GATC	3 cut(s)	289, 382, 505
DpnII	GATC	3 cut(s)	287, 380, 503
EaeI	YGGCCR	1 cut(s)	654
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Ecl136II	GAGCTC	2 cut(s)	7, 278
Eco24I	GRGCYC	2 cut(s)	9, 280
Eco31I	GGTCTC	1 cut(s)	684
Eco53kI	GAGCTC	2 cut(s)	7, 278
Eco81I	CCTNAGG	1 cut(s)	300
Eco88I	CYCGRG	1 cut(s)	384
EcoICRI	GAGCTC	2 cut(s)	7, 278
EcoRI	GAATTC	1 cut(s)	100
EcoT38I	GRGCYC	2 cut(s)	9, 280
FaeI	CATG	3 cut(s)	120, 433, 544
FalI	AAGNNNNNCTT	4 cut(s)	44, 76, 181, 213
FatI	CATG	3 cut(s)	116, 429, 540
FauI	CCCGC	1 cut(s)	537
FauNDI	CATATG	1 cut(s)	589
FblI	GTMKAC	1 cut(s)	439
Fnu4HI	GCNGC	1 cut(s)	225
FriOI	GRGCYC	2 cut(s)	9, 280
Fsp4HI	GCNGC	1 cut(s)	225
GluI	GCNGC	1 cut(s)	225
HaeIII	GGCC	3 cut(s)	489, 555, 656
HapII	CCGG	1 cut(s)	385
Hin1II	CATG	3 cut(s)	120, 433, 544
HinfI	GANTC	1 cut(s)	603
HpaII	CCGG	1 cut(s)	385
Hpy166II	GTNNAC	1 cut(s)	440
Hpy188I	TCNGA	3 cut(s)	145, 184, 496
Hpy188III	TCNNGA	2 cut(s)	430, 578
Hpy8I	GTNNAC	1 cut(s)	440
HpyAV	CCTTC	6 cut(s)	183, 329, 343, 409, 493, 692
HpyCH4IV	ACGT	1 cut(s)	642
HpyCH4V	TGCA	3 cut(s)	392, 407, 626
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	7 cut(s)	183, 252, 281, 300, 366, 495, 579
HpySE526I	ACGT	1 cut(s)	642
Hsp92II	CATG	3 cut(s)	120, 433, 544
Kzo9I	GATC	3 cut(s)	287, 380, 503
LguI	GCTCTTC	1 cut(s)	14
LmnI	GCTCC	2 cut(s)	4, 93
Lsp1109I	GCAGC	1 cut(s)	211
MaeII	ACGT	1 cut(s)	642
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	3 cut(s)	289, 382, 505
MboI	GATC	3 cut(s)	287, 380, 503
MboII	GAAGA	5 cut(s)	8, 52, 123, 126, 317
MflI	RGATCY	1 cut(s)	380
MhlI	GDGCHC	2 cut(s)	9, 280
MlsI	TGGCCA	1 cut(s)	656
MluCI	AATT	4 cut(s)	100, 308, 647, 690
MluNI	TGGCCA	1 cut(s)	656
MlyI	GAGTC	1 cut(s)	612
MmeI	TCCRAC	1 cut(s)	618
Mox20I	TGGCCA	1 cut(s)	656
MscI	TGGCCA	1 cut(s)	656
MseI	TTAA	2 cut(s)	215, 703
MslI	CAYNNNNRTG	3 cut(s)	121, 236, 428
Msp20I	TGGCCA	1 cut(s)	656
MspA1I	CMGCKG	1 cut(s)	224
MspI	CCGG	1 cut(s)	385
MspR9I	CCNGG	2 cut(s)	385, 386
MwoI	GCNNNNNNNGC	1 cut(s)	52
NciI	CCSGG	2 cut(s)	385, 386
NdeI	CATATG	1 cut(s)	589
NdeII	GATC	3 cut(s)	287, 380, 503
NlaIII	CATG	3 cut(s)	120, 433, 544
NlaIV	GGNNCC	2 cut(s)	89, 382
NmuCI	GTSAC	1 cut(s)	373
NspI	RCATGY	1 cut(s)	544
PaeI	GCATGC	1 cut(s)	544
PagI	TCATGA	1 cut(s)	429
PciSI	GCTCTTC	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	226
PleI	GAGTC	1 cut(s)	611
PpsI	GAGTC	1 cut(s)	611
Psp124BI	GAGCTC	2 cut(s)	9, 280
PspN4I	GGNNCC	2 cut(s)	89, 382
PstNI	CAGNNNCTG	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	380
PvuII	CAGCTG	1 cut(s)	224
RsaI	GTAC	2 cut(s)	265, 338
RsaNI	GTAC	2 cut(s)	264, 337
RseI	CAYNNNNRTG	3 cut(s)	121, 236, 428
SacI	GAGCTC	2 cut(s)	9, 280
SapI	GCTCTTC	1 cut(s)	14
SaqAI	TTAA	2 cut(s)	215, 703
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	3 cut(s)	287, 380, 503
ScaI	AGTACT	1 cut(s)	338
SchI	GAGTC	1 cut(s)	612
ScrFI	CCNGG	2 cut(s)	385, 386
SduI	GDGCHC	2 cut(s)	9, 280
SetI	ASST	9 cut(s)	9, 111, 226, 280, 301, 354, 585, 645, 703
SmaI	CCCGGG	1 cut(s)	386
SmiMI	CAYNNNNRTG	3 cut(s)	121, 236, 428
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
SphI	GCATGC	1 cut(s)	544
Sse9I	AATT	4 cut(s)	100, 308, 647, 690
SsiI	CCGC	1 cut(s)	544
SstI	GAGCTC	2 cut(s)	9, 280
StyD4I	CCNGG	2 cut(s)	383, 384
TaiI	ACGT	1 cut(s)	645
TasI	AATT	4 cut(s)	100, 308, 647, 690
TatI	WGTACW	2 cut(s)	263, 336
Tru1I	TTAA	2 cut(s)	215, 703
Tru9I	TTAA	2 cut(s)	215, 703
TscAI	CASTG	1 cut(s)	378
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	2 cut(s)	386, 418
TspGWI	ACGGA	1 cut(s)	489
TspMI	CCCGGG	1 cut(s)	384
TspRI	CASTG	1 cut(s)	378
XapI	RAATTY	2 cut(s)	100, 308
XceI	RCATGY	1 cut(s)	544
XmaI	CCCGGG	1 cut(s)	384
XmiI	GTMKAC	1 cut(s)	439
ZrmI	AGTACT	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.