Rw3G015820

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0009456
Physical Location & Seq
Reverse (-)
16358954 .. 16362731
3778 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G015820.1

Sequence Viewer

Length: 705 bp
ATGGAGCTCTTCTTTCTTCCTTACCACCATCACAACCCAACTCTGCTTCACAAGCCTTTCTTCTCTATACCCATTACAAGCAAGAGGCTCCCCAAGAGGAATTCACAGGTCTTACCATGTCAATGCTCATCTTCTTCCTCATCAGATGATGATACAAAACCAACCCACCAATCATTACACTCTGAGGGAAGGAGGGCTTTGATTGGCTCTCTCTTAACATCAGCTGCTGGCATTTATGTGTGTGATGTGGCTGAGGCTGTCAGTACAAGTAGGAGAGCTCTAAGAGGATCAAAAATACCTGAGGAAGAATTTACAACCCTTCCTAATGGTCTAAAGTACTATGACTTGAAGGTTGGGAATGGAACTGAGGCAGTGACAGGATCCCGGGTTGCAGTTCATTATGTTGCAAAGTGGAAGGGTATCACTTTCATGACAAGTAGACAAGGACTTGGTGTTGGTGGAGGAACGCCATACGGATTTGATGTAGGCCAATCTGAGAAGGGATCAGTCCTCAAGGGGTTAGATATTGGTGTAAAAGGCATGCGGGTAGGAGGCCAGCGATTGCTTATAGTTCCTCCTGAGCTGGCATATGGAAGCAAAGGAGTCCAAGAAATCCCTCCAAATGCAACAATAGAGTTGGACGTTGAATTACTGGCCATCAAACAAAGCCCATTTGGGTCTCCTGTAAAAATTGTTGAAGGTTAA

Protein Analysis

234

Amino Acids

25.17

Weight (kDa)

9.08

Isoelectric Point (pI)

50.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 123 - 218 2e-22 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 439
AciI CCGC 1 cut(s) 544
AclWI GGATC 4 cut(s) 295, 375, 388, 511
AcoI YGGCCR 1 cut(s) 654
AcsI RAATTY 2 cut(s) 100, 308
AfaI GTAC 2 cut(s) 265, 338
AgsI TTSAA 3 cut(s) 349, 647, 698
AluBI AGCT 4 cut(s) 7, 224, 278, 583
AluI AGCT 4 cut(s) 7, 224, 278, 583
Alw21I GWGCWC 2 cut(s) 9, 280
Alw26I GTCTC 1 cut(s) 684
AlwI GGATC 4 cut(s) 295, 375, 388, 511
AlwNI CAGNNNCTG 1 cut(s) 227
Ama87I CYCGRG 1 cut(s) 384
AoxI GGCC 3 cut(s) 487, 553, 654
ApeKI GCWGC 1 cut(s) 224
ApoI RAATTY 2 cut(s) 100, 308
AsuC2I CCSGG 2 cut(s) 385, 386
AvaI CYCGRG 1 cut(s) 384
AxyI CCTNAGG 1 cut(s) 300
BalI TGGCCA 1 cut(s) 656
BamHI GGATCC 1 cut(s) 380
BanII GRGCYC 2 cut(s) 9, 280
Bbv12I GWGCWC 2 cut(s) 9, 280
BbvCI CCTCAGC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 211
BccI CCATC 2 cut(s) 36, 665
BcnI CCSGG 2 cut(s) 385, 386
BcoDI GTCTC 1 cut(s) 684
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
BmcAI AGTACT 1 cut(s) 338
Bme1390I CCNGG 2 cut(s) 385, 386
BmeT110I CYCGRG 1 cut(s) 384
BmiI GGNNCC 2 cut(s) 89, 382
BmrFI CCNGG 2 cut(s) 385, 386
Bpu10I CCTNAGC 2 cut(s) 252, 579
BpuEI CTTGAG 1 cut(s) 497
BpuMI CCSGG 2 cut(s) 385, 386
BsaI GGTCTC 1 cut(s) 684
BsaJI CCNNGG 1 cut(s) 384
Bse1I ACTGG 1 cut(s) 657
Bse21I CCTNAGG 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 384
BseMII CTCAG 6 cut(s) 174, 243, 291, 357, 486, 570
BseNI ACTGG 1 cut(s) 657
BseXI GCAGC 1 cut(s) 211
BshFI GGCC 3 cut(s) 489, 555, 656
BsiHKAI GWGCWC 2 cut(s) 9, 280
BsiHKCI CYCGRG 1 cut(s) 384
BsiSI CCGG 1 cut(s) 385
BsmAI GTCTC 1 cut(s) 684
BsnI GGCC 3 cut(s) 489, 555, 656
Bso31I GGTCTC 1 cut(s) 684
BsoBI CYCGRG 1 cut(s) 384
Bsp1286I GDGCHC 2 cut(s) 9, 280
Bsp143I GATC 3 cut(s) 287, 380, 503
BspACI CCGC 1 cut(s) 544
BspANI GGCC 3 cut(s) 489, 555, 656
BspCNI CTCAG 6 cut(s) 175, 244, 292, 358, 487, 571
BspHI TCATGA 1 cut(s) 429
BspLI GGNNCC 2 cut(s) 89, 382
BspPI GGATC 4 cut(s) 295, 375, 388, 511
BspQI GCTCTTC 1 cut(s) 14
BspTNI GGTCTC 1 cut(s) 684
BsrI ACTGG 1 cut(s) 657
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 3 cut(s) 287, 380, 503
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 4 cut(s) 229, 542, 557, 585
BstDEI CTNAG 7 cut(s) 183, 252, 281, 300, 366, 495, 579
BstKTI GATC 3 cut(s) 290, 383, 506
BstMAI GTCTC 1 cut(s) 684
BstMBI GATC 3 cut(s) 287, 380, 503
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstNSI RCATGY 1 cut(s) 544
BstSCI CCNGG 2 cut(s) 383, 384
BstV1I GCAGC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 380
BstYI RGATCY 1 cut(s) 380
Bsu36I CCTNAGG 1 cut(s) 300
BsuRI GGCC 3 cut(s) 489, 555, 656
BtsI GCAGTG 1 cut(s) 378
BtsIMutI CAGTG 1 cut(s) 378
Cac8I GCNNGC 4 cut(s) 229, 542, 557, 585
CaiI CAGNNNCTG 1 cut(s) 227
CciI TCATGA 1 cut(s) 429
Cfr9I CCCGGG 1 cut(s) 384
Csp6I GTAC 2 cut(s) 264, 337
CviAII CATG 3 cut(s) 117, 430, 541
CviQI GTAC 2 cut(s) 264, 337
DdeI CTNAG 7 cut(s) 183, 252, 281, 300, 366, 495, 579
DpnI GATC 3 cut(s) 289, 382, 505
DpnII GATC 3 cut(s) 287, 380, 503
EaeI YGGCCR 1 cut(s) 654
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Ecl136II GAGCTC 2 cut(s) 7, 278
Eco24I GRGCYC 2 cut(s) 9, 280
Eco31I GGTCTC 1 cut(s) 684
Eco53kI GAGCTC 2 cut(s) 7, 278
Eco81I CCTNAGG 1 cut(s) 300
Eco88I CYCGRG 1 cut(s) 384
EcoICRI GAGCTC 2 cut(s) 7, 278
EcoRI GAATTC 1 cut(s) 100
EcoT38I GRGCYC 2 cut(s) 9, 280
FaeI CATG 3 cut(s) 120, 433, 544
FalI AAGNNNNNCTT 4 cut(s) 44, 76, 181, 213
FatI CATG 3 cut(s) 116, 429, 540
FauI CCCGC 1 cut(s) 537
FauNDI CATATG 1 cut(s) 589
FblI GTMKAC 1 cut(s) 439
Fnu4HI GCNGC 1 cut(s) 225
FriOI GRGCYC 2 cut(s) 9, 280
Fsp4HI GCNGC 1 cut(s) 225
GluI GCNGC 1 cut(s) 225
HaeIII GGCC 3 cut(s) 489, 555, 656
HapII CCGG 1 cut(s) 385
Hin1II CATG 3 cut(s) 120, 433, 544
HinfI GANTC 1 cut(s) 603
HpaII CCGG 1 cut(s) 385
Hpy166II GTNNAC 1 cut(s) 440
Hpy188I TCNGA 3 cut(s) 145, 184, 496
Hpy188III TCNNGA 2 cut(s) 430, 578
Hpy8I GTNNAC 1 cut(s) 440
HpyAV CCTTC 6 cut(s) 183, 329, 343, 409, 493, 692
HpyCH4IV ACGT 1 cut(s) 642
HpyCH4V TGCA 3 cut(s) 392, 407, 626
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 7 cut(s) 183, 252, 281, 300, 366, 495, 579
HpySE526I ACGT 1 cut(s) 642
Hsp92II CATG 3 cut(s) 120, 433, 544
Kzo9I GATC 3 cut(s) 287, 380, 503
LguI GCTCTTC 1 cut(s) 14
LmnI GCTCC 2 cut(s) 4, 93
Lsp1109I GCAGC 1 cut(s) 211
MaeII ACGT 1 cut(s) 642
MaeIII GTNAC 1 cut(s) 373
MalI GATC 3 cut(s) 289, 382, 505
MboI GATC 3 cut(s) 287, 380, 503
MboII GAAGA 5 cut(s) 8, 52, 123, 126, 317
MflI RGATCY 1 cut(s) 380
MhlI GDGCHC 2 cut(s) 9, 280
MlsI TGGCCA 1 cut(s) 656
MluCI AATT 4 cut(s) 100, 308, 647, 690
MluNI TGGCCA 1 cut(s) 656
MlyI GAGTC 1 cut(s) 612
MmeI TCCRAC 1 cut(s) 618
Mox20I TGGCCA 1 cut(s) 656
MscI TGGCCA 1 cut(s) 656
MseI TTAA 2 cut(s) 215, 703
MslI CAYNNNNRTG 3 cut(s) 121, 236, 428
Msp20I TGGCCA 1 cut(s) 656
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 1 cut(s) 385
MspR9I CCNGG 2 cut(s) 385, 386
MwoI GCNNNNNNNGC 1 cut(s) 52
NciI CCSGG 2 cut(s) 385, 386
NdeI CATATG 1 cut(s) 589
NdeII GATC 3 cut(s) 287, 380, 503
NlaIII CATG 3 cut(s) 120, 433, 544
NlaIV GGNNCC 2 cut(s) 89, 382
NmuCI GTSAC 1 cut(s) 373
NspI RCATGY 1 cut(s) 544
PaeI GCATGC 1 cut(s) 544
PagI TCATGA 1 cut(s) 429
PciSI GCTCTTC 1 cut(s) 14
PkrI GCNGC 1 cut(s) 226
PleI GAGTC 1 cut(s) 611
PpsI GAGTC 1 cut(s) 611
Psp124BI GAGCTC 2 cut(s) 9, 280
PspN4I GGNNCC 2 cut(s) 89, 382
PstNI CAGNNNCTG 1 cut(s) 227
PsuI RGATCY 1 cut(s) 380
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 2 cut(s) 265, 338
RsaNI GTAC 2 cut(s) 264, 337
RseI CAYNNNNRTG 3 cut(s) 121, 236, 428
SacI GAGCTC 2 cut(s) 9, 280
SapI GCTCTTC 1 cut(s) 14
SaqAI TTAA 2 cut(s) 215, 703
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 3 cut(s) 287, 380, 503
ScaI AGTACT 1 cut(s) 338
SchI GAGTC 1 cut(s) 612
ScrFI CCNGG 2 cut(s) 385, 386
SduI GDGCHC 2 cut(s) 9, 280
SetI ASST 9 cut(s) 9, 111, 226, 280, 301, 354, 585, 645, 703
SmaI CCCGGG 1 cut(s) 386
SmiMI CAYNNNNRTG 3 cut(s) 121, 236, 428
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
SphI GCATGC 1 cut(s) 544
Sse9I AATT 4 cut(s) 100, 308, 647, 690
SsiI CCGC 1 cut(s) 544
SstI GAGCTC 2 cut(s) 9, 280
StyD4I CCNGG 2 cut(s) 383, 384
TaiI ACGT 1 cut(s) 645
TasI AATT 4 cut(s) 100, 308, 647, 690
TatI WGTACW 2 cut(s) 263, 336
Tru1I TTAA 2 cut(s) 215, 703
Tru9I TTAA 2 cut(s) 215, 703
TscAI CASTG 1 cut(s) 378
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 2 cut(s) 386, 418
TspGWI ACGGA 1 cut(s) 489
TspMI CCCGGG 1 cut(s) 384
TspRI CASTG 1 cut(s) 378
XapI RAATTY 2 cut(s) 100, 308
XceI RCATGY 1 cut(s) 544
XmaI CCCGGG 1 cut(s) 384
XmiI GTMKAC 1 cut(s) 439
ZrmI AGTACT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.