Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0009456

Physical Location & Seq

Genomic Coordinates Forward (+)

16001511 .. 16004789

Gene Structure 3279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1101900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAGCTTTTCCTTCTTCCTTATCACCATCACAACCCAACTCTGCTCCACAGGCCTCTCTTCCCACAACCCATCACAAGCAACAGCAAGAGATTCCCCAAGAGGAAGTCACATGTGTTGCCATGTCAATGCTCACTGCCTTCCTCAGATGATTCTGCACAACCAACCAACCAAATTACACCATTTGAGGGCAGGAGGGCTTTGATTGGCACTCTCTTAGCCTCAGCTGCTGGCATTTATGTGTGTGATGGGGCTGAAGCTGTTAGCACAAGTAGGAGAGCTCTAAGAGGAGCGAAAATACCCGAGAGTGAATTTACAACCCTTCCCAATGGCCTGAAGTATTATGACTTGAAGGTCGGGGGTGGAGTTGAGGCGGTGACAGGATCCCGGGTTGCAGTTCATTATGTTGCGAAGTGGAAGGGTATCACTTTTATGACAAGTAGACAAGGACTTGGTGTTGGTGGAGGAACGCCATACGGATTTGACGTAGGCCAATCTGAGAGGGGATCAGTCCTTAAAGGATTAGATCTTGGTGTAAAAGGCATGCGGGTAGGAGGCCAGCGATTGCTAATAGTTCCTCCCGAGCTAGCATATGGAAGCAAAGGAGTACAGGAAATTCCTCCAAATGCAACCATAGAGTTGGACGTTGAACTACTCGCCATTAAACAAACCCCATTTGGGTCTCCTGTAAAAATTGTTGAAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

236

Amino Acids

25.19

Weight (kDa)

9.38

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	124 - 219	6.1e-22	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10060
fragaria_vesca	FvH4_6g17331
malus_domestica	MD12G1101900.v1.1
pyrus_communis	pycom12g10030
rosa_chinensis	RchiOBHm_Chr1g0340031 RchiOBHm_Chr3g0471471
rosa_laevigata	RLG00000008643 RLG00000024175
rosa_multiflora	Rmu_sc0006582.1_g000007
rosa_roxburghii	Rroxscaffold_6G00409920
rosa_rugosa	Rorug02G0192700 Rorug02G0192700 Rorug02G0192700 Rorug02G0192800 Rorug03G0118000
rosa_samantha	Rh2CG297900 Rh3BG193400 Rh3CG183900 Rh3CG287700 Rh3DG182100
rosa_wichuraiana	Rw1G012870 Rw3G015820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	353
AccI	GTMKAC	1 cut(s)	442
AciI	CCGC	2 cut(s)	374, 547
AclWI	GGATC	3 cut(s)	378, 391, 514
AcsI	RAATTY	2 cut(s)	311, 615
AcuI	CTGAAG	2 cut(s)	276, 356
AfaI	GTAC	1 cut(s)	609
AfiI	CCNNNNNNNGG	2 cut(s)	188, 678
AflIII	ACRYGT	1 cut(s)	112
AgsI	TTSAA	3 cut(s)	352, 650, 701
AluBI	AGCT	5 cut(s)	7, 227, 260, 281, 586
AluI	AGCT	5 cut(s)	7, 227, 260, 281, 586
Alw21I	GWGCWC	1 cut(s)	283
Alw26I	GTCTC	1 cut(s)	687
AlwI	GGATC	3 cut(s)	378, 391, 514
AlwNI	CAGNNNCTG	1 cut(s)	230
Ama87I	CYCGRG	3 cut(s)	302, 387, 581
AoxI	GGCC	4 cut(s)	53, 331, 490, 556
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	2 cut(s)	311, 615
AsuC2I	CCSGG	2 cut(s)	388, 389
AsuHPI	GGTGA	2 cut(s)	17, 388
AsuNHI	GCTAGC	1 cut(s)	586
AvaI	CYCGRG	3 cut(s)	302, 387, 581
BamHI	GGATCC	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	283
Bbv12I	GWGCWC	1 cut(s)	283
BbvCI	CCTCAGC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	3 cut(s)	36, 80, 242
BcnI	CCSGG	2 cut(s)	388, 389
BcoDI	GTCTC	1 cut(s)	687
BfaI	CTAG	1 cut(s)	587
BglII	AGATCT	1 cut(s)	526
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme1390I	CCNGG	2 cut(s)	388, 389
BmeT110I	CYCGRG	3 cut(s)	302, 387, 581
BmiI	GGNNCC	1 cut(s)	385
BmrFI	CCNGG	2 cut(s)	388, 389
BmtI	GCTAGC	1 cut(s)	590
Bpu10I	CCTNAGC	1 cut(s)	223
BpuMI	CCSGG	2 cut(s)	388, 389
BsaI	GGTCTC	1 cut(s)	687
BsaJI	CCNNGG	1 cut(s)	387
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 678
BseDI	CCNNGG	1 cut(s)	387
BseLI	CCNNNNNNNGG	2 cut(s)	188, 678
BseMII	CTCAG	3 cut(s)	159, 237, 489
BseRI	GAGGAG	1 cut(s)	303
BseXI	GCAGC	1 cut(s)	214
BsgI	GTGCAG	1 cut(s)	141
BshFI	GGCC	4 cut(s)	55, 333, 492, 558
BsiHKAI	GWGCWC	1 cut(s)	283
BsiHKCI	CYCGRG	3 cut(s)	302, 387, 581
BsiSI	CCGG	1 cut(s)	388
BslI	CCNNNNNNNGG	2 cut(s)	188, 678
BsmAI	GTCTC	1 cut(s)	687
BsnI	GGCC	4 cut(s)	55, 333, 492, 558
Bso31I	GGTCTC	1 cut(s)	687
BsoBI	CYCGRG	3 cut(s)	302, 387, 581
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp143I	GATC	3 cut(s)	383, 506, 526
BspACI	CCGC	2 cut(s)	374, 547
BspANI	GGCC	4 cut(s)	55, 333, 492, 558
BspCNI	CTCAG	3 cut(s)	158, 236, 490
BspLI	GGNNCC	1 cut(s)	385
BspOI	GCTAGC	1 cut(s)	590
BspPI	GGATC	3 cut(s)	378, 391, 514
BspTNI	GGTCTC	1 cut(s)	687
BssECI	CCNNGG	1 cut(s)	387
BssMI	GATC	3 cut(s)	383, 506, 526
Bst6I	CTCTTC	1 cut(s)	65
BstC8I	GCNNGC	4 cut(s)	232, 545, 560, 588
BstDEI	CTNAG	5 cut(s)	145, 217, 223, 284, 498
BstKTI	GATC	3 cut(s)	386, 509, 529
BstMAI	GTCTC	1 cut(s)	687
BstMBI	GATC	3 cut(s)	383, 506, 526
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 227
BstNSI	RCATGY	2 cut(s)	116, 547
BstSCI	CCNGG	2 cut(s)	386, 387
BstV1I	GCAGC	1 cut(s)	214
BstX2I	RGATCY	2 cut(s)	383, 526
BstXI	CCANNNNNNTGG	1 cut(s)	640
BstYI	RGATCY	2 cut(s)	383, 526
BsuRI	GGCC	4 cut(s)	55, 333, 492, 558
BtsI	GCAGTG	1 cut(s)	134
BtsIMutI	CAGTG	1 cut(s)	134
Cac8I	GCNNGC	4 cut(s)	232, 545, 560, 588
CaiI	CAGNNNCTG	1 cut(s)	230
Cfr9I	CCCGGG	1 cut(s)	387
Csp6I	GTAC	1 cut(s)	608
CviAII	CATG	3 cut(s)	113, 123, 544
CviQI	GTAC	1 cut(s)	608
DdeI	CTNAG	5 cut(s)	145, 217, 223, 284, 498
DpnI	GATC	3 cut(s)	385, 508, 528
DpnII	GATC	3 cut(s)	383, 506, 526
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Ecl136II	GAGCTC	1 cut(s)	281
Eco147I	AGGCCT	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	283
Eco31I	GGTCTC	1 cut(s)	687
Eco53kI	GAGCTC	1 cut(s)	281
Eco57I	CTGAAG	2 cut(s)	276, 356
Eco88I	CYCGRG	3 cut(s)	302, 387, 581
EcoICRI	GAGCTC	1 cut(s)	281
EcoT38I	GRGCYC	1 cut(s)	283
FaeI	CATG	3 cut(s)	116, 126, 547
FatI	CATG	3 cut(s)	112, 122, 543
FauI	CCCGC	1 cut(s)	540
FauNDI	CATATG	1 cut(s)	592
FblI	GTMKAC	1 cut(s)	442
Fnu4HI	GCNGC	1 cut(s)	228
FriOI	GRGCYC	1 cut(s)	283
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	1 cut(s)	587
GluI	GCNGC	1 cut(s)	228
HaeIII	GGCC	4 cut(s)	55, 333, 492, 558
HapII	CCGG	1 cut(s)	388
Hin1II	CATG	3 cut(s)	116, 126, 547
HinfI	GANTC	2 cut(s)	93, 152
HpaII	CCGG	1 cut(s)	388
HphI	GGTGA	2 cut(s)	17, 388
Hpy166II	GTNNAC	1 cut(s)	443
Hpy188I	TCNGA	2 cut(s)	148, 499
Hpy188III	TCNNGA	1 cut(s)	581
Hpy8I	GTNNAC	1 cut(s)	443
HpyAV	CCTTC	6 cut(s)	23, 150, 332, 346, 412, 695
HpyCH4IV	ACGT	2 cut(s)	486, 645
HpyCH4V	TGCA	3 cut(s)	158, 395, 629
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 227
HpyF3I	CTNAG	5 cut(s)	145, 217, 223, 284, 498
HpySE526I	ACGT	2 cut(s)	486, 645
Hsp92II	CATG	3 cut(s)	116, 126, 547
Kzo9I	GATC	3 cut(s)	383, 506, 526
LmnI	GCTCC	3 cut(s)	4, 51, 290
LpnPI	CCDG	9 cut(s)	37, 178, 216, 347, 366, 401, 572, 596, 699
Lsp1109I	GCAGC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	587
MaeII	ACGT	2 cut(s)	486, 645
MaeIII	GTNAC	2 cut(s)	108, 376
MalI	GATC	3 cut(s)	385, 508, 528
MboI	GATC	3 cut(s)	383, 506, 526
MboII	GAAGA	2 cut(s)	8, 52
MflI	RGATCY	2 cut(s)	383, 526
MhlI	GDGCHC	1 cut(s)	283
MluCI	AATT	4 cut(s)	174, 311, 615, 693
MmeI	TCCRAC	1 cut(s)	621
MseI	TTAA	3 cut(s)	516, 663, 706
MslI	CAYNNNNRTG	3 cut(s)	127, 239, 431
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	1 cut(s)	388
MspR9I	CCNGG	2 cut(s)	388, 389
MwoI	GCNNNNNNNGC	2 cut(s)	52, 227
NciI	CCSGG	2 cut(s)	388, 389
NdeI	CATATG	1 cut(s)	592
NdeII	GATC	3 cut(s)	383, 506, 526
NheI	GCTAGC	1 cut(s)	586
NlaIII	CATG	3 cut(s)	116, 126, 547
NlaIV	GGNNCC	1 cut(s)	385
NmuCI	GTSAC	2 cut(s)	108, 376
NspI	RCATGY	2 cut(s)	116, 547
PaeI	GCATGC	1 cut(s)	547
PceI	AGGCCT	1 cut(s)	55
PciI	ACATGT	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	1 cut(s)	483
PfeI	GAWTC	2 cut(s)	93, 152
PkrI	GCNGC	1 cut(s)	229
PscI	ACATGT	1 cut(s)	112
Psp124BI	GAGCTC	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	385
PstNI	CAGNNNCTG	1 cut(s)	230
PsuI	RGATCY	2 cut(s)	383, 526
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	1 cut(s)	609
RsaNI	GTAC	1 cut(s)	608
RseI	CAYNNNNRTG	3 cut(s)	127, 239, 431
SacI	GAGCTC	1 cut(s)	283
SaqAI	TTAA	3 cut(s)	516, 663, 706
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	3 cut(s)	383, 506, 526
ScrFI	CCNGG	2 cut(s)	388, 389
SduI	GDGCHC	1 cut(s)	283
SetI	ASST	9 cut(s)	9, 229, 262, 283, 357, 489, 588, 648, 706
SmaI	CCCGGG	1 cut(s)	389
SmiMI	CAYNNNNRTG	3 cut(s)	127, 239, 431
SphI	GCATGC	1 cut(s)	547
Sse9I	AATT	4 cut(s)	174, 311, 615, 693
SseBI	AGGCCT	1 cut(s)	55
SsiI	CCGC	2 cut(s)	374, 547
SspMI	CTAG	1 cut(s)	587
SstI	GAGCTC	1 cut(s)	283
StuI	AGGCCT	1 cut(s)	55
StyD4I	CCNGG	2 cut(s)	386, 387
TaiI	ACGT	2 cut(s)	489, 648
TasI	AATT	4 cut(s)	174, 311, 615, 693
TatI	WGTACW	1 cut(s)	607
TfiI	GAWTC	2 cut(s)	93, 152
Tru1I	TTAA	3 cut(s)	516, 663, 706
Tru9I	TTAA	3 cut(s)	516, 663, 706
TscAI	CASTG	1 cut(s)	141
TseFI	GTSAC	2 cut(s)	108, 376
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	2 cut(s)	108, 376
TspDTI	ATGAA	1 cut(s)	389
TspGWI	ACGGA	1 cut(s)	492
TspMI	CCCGGG	1 cut(s)	387
TspRI	CASTG	1 cut(s)	141
XapI	RAATTY	2 cut(s)	311, 615
XceI	RCATGY	2 cut(s)	116, 547
XmaI	CCCGGG	1 cut(s)	387
XmiI	GTMKAC	1 cut(s)	442
XspI	CTAG	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.