RLG00000008643

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0009456
Physical Location & Seq
Forward (+)
33985748 .. 33988141
2394 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008643

Sequence Viewer

Length: 411 bp
ATGGAGTATTCAATCTTGATTGTTTCGATGGATGGTGATATCACCACGACACCACTGACACAAGAGAGTAAAACAATCGGTGCATGTGGAAAAGTTCATTATGTTGCAAAGTGGACGGGTATCACTTTCATGACAAGTAGACAAGGACTTGGTGTTGGTGGAGGAACGGGATTTGTTGTAGGCCAATCTGAGAAGGGATCAGTCCTCAAGGGGTTAGATATTGGTGTAAAAGGCATGCGGGTAGGAGGCCAGCGATTGCTTATAGTTCCTCCTGATCAGCTGGCATATGGAAGCAAAGGAGTCCAAGAAATCCCTCCAAATGCAACAATAGAAGTAACAGAACTTTATGGATGCTTTTCTCTTTTCCTCTTCCAGGCTTTTTATGCGAACTTAAGTGCATTCAATGCTTAA

Protein Analysis

137

Amino Acids

14.42

Weight (kDa)

6.55

Isoelectric Point (pI)

31.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 31 - 110 3.2e-14 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 139
AciI CCGC 1 cut(s) 238
AclWI GGATC 1 cut(s) 205
AfiI CCNNNNNNNGG 1 cut(s) 373
AflII CTTAAG 1 cut(s) 391
AgsI TTSAA 2 cut(s) 12, 403
AjnI CCWGG 1 cut(s) 372
AluBI AGCT 1 cut(s) 280
AluI AGCT 1 cut(s) 280
AlwI GGATC 1 cut(s) 205
AoxI GGCC 2 cut(s) 181, 247
AsuHPI GGTGA 2 cut(s) 34, 47
BccI CCATC 2 cut(s) 22, 26
BciT130I CCWGG 1 cut(s) 374
BclI TGATCA 1 cut(s) 274
BfrI CTTAAG 1 cut(s) 391
Bme1390I CCNGG 1 cut(s) 374
BmrFI CCNGG 1 cut(s) 374
BmsI GCATC 1 cut(s) 341
BpuEI CTTGAG 1 cut(s) 191
Bsc4I CCNNNNNNNGG 1 cut(s) 373
BseBI CCWGG 1 cut(s) 374
BseGI GGATG 2 cut(s) 37, 356
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMII CTCAG 1 cut(s) 180
BshFI GGCC 2 cut(s) 183, 249
BslI CCNNNNNNNGG 1 cut(s) 373
BsmI GAATGC 1 cut(s) 398
BsnI GGCC 2 cut(s) 183, 249
Bsp143I GATC 2 cut(s) 197, 274
BspACI CCGC 1 cut(s) 238
BspANI GGCC 2 cut(s) 183, 249
BspCNI CTCAG 1 cut(s) 181
BspHI TCATGA 1 cut(s) 129
BspPI GGATC 1 cut(s) 205
BspTI CTTAAG 1 cut(s) 391
BssMI GATC 2 cut(s) 197, 274
Bst2UI CCWGG 1 cut(s) 374
Bst6I CTCTTC 1 cut(s) 374
BstAFI CTTAAG 1 cut(s) 391
BstAPI GCANNNNNTGC 1 cut(s) 404
BstC8I GCNNGC 3 cut(s) 236, 251, 282
BstDEI CTNAG 1 cut(s) 189
BstENI CCTNNNNNAGG 1 cut(s) 371
BstF5I GGATG 2 cut(s) 37, 356
BstKTI GATC 2 cut(s) 200, 277
BstMBI GATC 2 cut(s) 197, 274
BstMWI GCNNNNNNNGC 2 cut(s) 383, 404
BstNI CCWGG 1 cut(s) 374
BstNSI RCATGY 2 cut(s) 87, 238
BstSCI CCNGG 1 cut(s) 372
BsuRI GGCC 2 cut(s) 183, 249
BtsCI GGATG 2 cut(s) 37, 356
BtsIMutI CAGTG 1 cut(s) 53
Cac8I GCNNGC 3 cut(s) 236, 251, 282
CciI TCATGA 1 cut(s) 129
CviAII CATG 3 cut(s) 84, 130, 235
CviJI RGCY 4 cut(s) 183, 249, 280, 377
CviKI_1 RGCY 4 cut(s) 183, 249, 280, 377
DdeI CTNAG 1 cut(s) 189
DpnI GATC 2 cut(s) 199, 276
DpnII GATC 2 cut(s) 197, 274
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
Eco32I GATATC 1 cut(s) 40
EcoNI CCTNNNNNAGG 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 372
EcoRV GATATC 1 cut(s) 40
FaeI CATG 3 cut(s) 87, 133, 238
FaiI YATR 9 cut(s) 85, 102, 131, 236, 263, 286, 288, 348, 384
FatI CATG 3 cut(s) 83, 129, 234
FauI CCCGC 1 cut(s) 231
FauNDI CATATG 1 cut(s) 286
FbaI TGATCA 1 cut(s) 274
FblI GTMKAC 1 cut(s) 139
FokI GGATG 2 cut(s) 44, 363
HaeIII GGCC 2 cut(s) 183, 249
Hin1II CATG 3 cut(s) 87, 133, 238
HinfI GANTC 1 cut(s) 300
HphI GGTGA 2 cut(s) 34, 47
Hpy166II GTNNAC 2 cut(s) 114, 140
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 3 cut(s) 16, 130, 272
Hpy8I GTNNAC 2 cut(s) 114, 140
HpyAV CCTTC 1 cut(s) 187
HpyCH4V TGCA 4 cut(s) 83, 107, 323, 398
HpyF10VI GCNNNNNNNGC 2 cut(s) 383, 404
HpyF3I CTNAG 1 cut(s) 189
Hsp92II CATG 3 cut(s) 87, 133, 238
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 2 cut(s) 197, 274
LpnPI CCDG 5 cut(s) 263, 266, 285, 359, 386
LweI GCATC 1 cut(s) 341
MaeIII GTNAC 1 cut(s) 334
MalI GATC 2 cut(s) 199, 276
MboI GATC 2 cut(s) 197, 274
MboII GAAGA 1 cut(s) 361
MlyI GAGTC 1 cut(s) 309
MnlI CCTC 6 cut(s) 155, 215, 239, 279, 324, 377
MseI TTAA 2 cut(s) 392, 409
MslI CAYNNNNRTG 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 280
MspCI CTTAAG 1 cut(s) 391
MspR9I CCNGG 1 cut(s) 374
Mva1269I GAATGC 1 cut(s) 398
MvaI CCWGG 1 cut(s) 374
MwoI GCNNNNNNNGC 2 cut(s) 383, 404
NdeI CATATG 1 cut(s) 286
NdeII GATC 2 cut(s) 197, 274
NlaIII CATG 3 cut(s) 87, 133, 238
NspI RCATGY 2 cut(s) 87, 238
PaeI GCATGC 1 cut(s) 238
PagI TCATGA 1 cut(s) 129
PctI GAATGC 1 cut(s) 398
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
Psp6I CCWGG 1 cut(s) 372
PspGI CCWGG 1 cut(s) 372
PvuII CAGCTG 1 cut(s) 280
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 2 cut(s) 392, 409
Sau3AI GATC 2 cut(s) 197, 274
SchI GAGTC 1 cut(s) 309
ScrFI CCNGG 1 cut(s) 374
SetI ASST 1 cut(s) 282
SfaNI GCATC 1 cut(s) 341
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 2 cut(s) 206, 391
SmoI CTYRAG 2 cut(s) 206, 391
SphI GCATGC 1 cut(s) 238
SsiI CCGC 1 cut(s) 238
StyD4I CCNGG 1 cut(s) 372
TaqI TCGA 1 cut(s) 26
Tru1I TTAA 2 cut(s) 392, 409
Tru9I TTAA 2 cut(s) 392, 409
TscAI CASTG 1 cut(s) 60
TspDTI ATGAA 2 cut(s) 86, 118
TspRI CASTG 1 cut(s) 60
Vha464I CTTAAG 1 cut(s) 391
XagI CCTNNNNNAGG 1 cut(s) 371
XceI RCATGY 2 cut(s) 87, 238
XmiI GTMKAC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.