RLG00000024175

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0009456
Physical Location & Seq
Forward (+)
32770799 .. 32774547
3749 bp
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UTR
Exon/CDS
Intron
RLM00000024175

Sequence Viewer

Length: 693 bp
ATGGAGCTCGTCTTTCTTCCTTACCACCATCACAACCCAACTCTGCTTCACAAGCCTTTCTTCTCTATACCCATTACAAGCAAGAGGCTCCCCAAGTGGAATTCGCAGGTCTTACCATGTCAATGCTCATCAGATGATGATACAAAACCAACCCACCAATCATTACACTTTGAGGGAAGGAGGGCTTTGATTGGCTCTCTCTTAACATCAGCTGCTGGCATTTATGTGTGTGATGTGGCTGAGGCTGTCAGCACAAGTAGGAGAGCTCTAAGAGGAGCAAAAATACCTGAGGAAGAATTTACAACCCTTCCTAATGGTCTAAAGTACTATGACTTGAAGGTTGGGAATGGAACTGAGGCAGTGACAGGATCCCGGGTTGCAGTTCATTATGTTGCAAAGTGGAAGGGTATCACTTTCATGACAAGTAGACAAGGACTTGGTGTTGGTGGAGGAACGCCATACGGATTTGATGTAGGCCAATCTGAGAAGGGATCAGTCCTCAAGGGGTTGGATATTGGTGTAAAAGGCATGCGGGTAGGAGGCCAGCGATTGCTTATAGTTCCTCCTGAGCTGGCATATGGAAGCAAAGGAGTCCAAGAAATCCCTCCAAATGCAACAATAGAGTTGGACGTTGAATTACTGGCCATCAAACAAAGCCCATTTGGGTCTCCTGTAAAAATTGTTGAAGGTTAA

Protein Analysis

231

Amino Acids

24.85

Weight (kDa)

8.91

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 119 - 214 2e-22 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 97
AccI GTMKAC 1 cut(s) 427
AciI CCGC 1 cut(s) 532
AclWI GGATC 3 cut(s) 363, 376, 499
AcoI YGGCCR 1 cut(s) 642
AcsI RAATTY 2 cut(s) 100, 296
AfaI GTAC 1 cut(s) 326
AgsI TTSAA 3 cut(s) 337, 635, 686
AluBI AGCT 4 cut(s) 7, 212, 266, 571
AluI AGCT 4 cut(s) 7, 212, 266, 571
Alw21I GWGCWC 2 cut(s) 9, 268
Alw26I GTCTC 1 cut(s) 672
AlwI GGATC 3 cut(s) 363, 376, 499
AlwNI CAGNNNCTG 1 cut(s) 215
Ama87I CYCGRG 1 cut(s) 372
AoxI GGCC 3 cut(s) 475, 541, 642
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 2 cut(s) 100, 296
AsuC2I CCSGG 2 cut(s) 373, 374
AvaI CYCGRG 1 cut(s) 372
AxyI CCTNAGG 1 cut(s) 288
BalI TGGCCA 1 cut(s) 644
BamHI GGATCC 1 cut(s) 368
BanII GRGCYC 2 cut(s) 9, 268
Bbv12I GWGCWC 2 cut(s) 9, 268
BbvCI CCTCAGC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 199
BccI CCATC 2 cut(s) 36, 653
BcnI CCSGG 2 cut(s) 373, 374
BcoDI GTCTC 1 cut(s) 672
BfuAI ACCTGC 1 cut(s) 97
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
BmcAI AGTACT 1 cut(s) 326
Bme1390I CCNGG 2 cut(s) 373, 374
BmeT110I CYCGRG 1 cut(s) 372
BmiI GGNNCC 2 cut(s) 89, 370
BmrFI CCNGG 2 cut(s) 373, 374
Bpu10I CCTNAGC 2 cut(s) 240, 567
BpuEI CTTGAG 1 cut(s) 485
BpuMI CCSGG 2 cut(s) 373, 374
BsaI GGTCTC 1 cut(s) 672
BsaJI CCNNGG 1 cut(s) 372
Bse1I ACTGG 1 cut(s) 645
Bse21I CCTNAGG 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 372
BseMII CTCAG 5 cut(s) 231, 279, 345, 474, 558
BseNI ACTGG 1 cut(s) 645
BseRI GAGGAG 1 cut(s) 288
BseXI GCAGC 1 cut(s) 199
BshFI GGCC 3 cut(s) 477, 543, 644
BsiHKAI GWGCWC 2 cut(s) 9, 268
BsiHKCI CYCGRG 1 cut(s) 372
BsiSI CCGG 1 cut(s) 373
BsmAI GTCTC 1 cut(s) 672
BsnI GGCC 3 cut(s) 477, 543, 644
Bso31I GGTCTC 1 cut(s) 672
BsoBI CYCGRG 1 cut(s) 372
Bsp1286I GDGCHC 2 cut(s) 9, 268
Bsp143I GATC 2 cut(s) 368, 491
BspACI CCGC 1 cut(s) 532
BspANI GGCC 3 cut(s) 477, 543, 644
BspCNI CTCAG 5 cut(s) 232, 280, 346, 475, 559
BspHI TCATGA 1 cut(s) 417
BspLI GGNNCC 2 cut(s) 89, 370
BspMI ACCTGC 1 cut(s) 97
BspPI GGATC 3 cut(s) 363, 376, 499
BspTNI GGTCTC 1 cut(s) 672
BsrI ACTGG 1 cut(s) 645
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 2 cut(s) 368, 491
BstC8I GCNNGC 4 cut(s) 217, 530, 545, 573
BstDEI CTNAG 6 cut(s) 240, 269, 288, 354, 483, 567
BstKTI GATC 2 cut(s) 371, 494
BstMAI GTCTC 1 cut(s) 672
BstMBI GATC 2 cut(s) 368, 491
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstNSI RCATGY 1 cut(s) 532
BstSCI CCNGG 2 cut(s) 371, 372
BstV1I GCAGC 1 cut(s) 199
BstX2I RGATCY 1 cut(s) 368
BstYI RGATCY 1 cut(s) 368
Bsu36I CCTNAGG 1 cut(s) 288
BsuRI GGCC 3 cut(s) 477, 543, 644
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 1 cut(s) 366
BveI ACCTGC 1 cut(s) 97
Cac8I GCNNGC 4 cut(s) 217, 530, 545, 573
CaiI CAGNNNCTG 1 cut(s) 215
CciI TCATGA 1 cut(s) 417
Cfr9I CCCGGG 1 cut(s) 372
Csp6I GTAC 1 cut(s) 325
CviAII CATG 3 cut(s) 117, 418, 529
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 6 cut(s) 240, 269, 288, 354, 483, 567
DpnI GATC 2 cut(s) 370, 493
DpnII GATC 2 cut(s) 368, 491
EaeI YGGCCR 1 cut(s) 642
Ecl136II GAGCTC 2 cut(s) 7, 266
Eco24I GRGCYC 2 cut(s) 9, 268
Eco31I GGTCTC 1 cut(s) 672
Eco53kI GAGCTC 2 cut(s) 7, 266
Eco81I CCTNAGG 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 372
EcoICRI GAGCTC 2 cut(s) 7, 266
EcoRI GAATTC 1 cut(s) 100
EcoT38I GRGCYC 2 cut(s) 9, 268
FaeI CATG 3 cut(s) 120, 421, 532
FalI AAGNNNNNCTT 4 cut(s) 44, 76, 169, 201
FatI CATG 3 cut(s) 116, 417, 528
FauI CCCGC 1 cut(s) 525
FauNDI CATATG 1 cut(s) 577
FblI GTMKAC 1 cut(s) 427
Fnu4HI GCNGC 1 cut(s) 213
FriOI GRGCYC 2 cut(s) 9, 268
Fsp4HI GCNGC 1 cut(s) 213
GluI GCNGC 1 cut(s) 213
HaeIII GGCC 3 cut(s) 477, 543, 644
HapII CCGG 1 cut(s) 373
Hin1II CATG 3 cut(s) 120, 421, 532
HinfI GANTC 1 cut(s) 591
HpaII CCGG 1 cut(s) 373
Hpy166II GTNNAC 1 cut(s) 428
Hpy188I TCNGA 2 cut(s) 133, 484
Hpy188III TCNNGA 2 cut(s) 418, 566
Hpy8I GTNNAC 1 cut(s) 428
HpyAV CCTTC 6 cut(s) 171, 317, 331, 397, 481, 680
HpyCH4IV ACGT 1 cut(s) 630
HpyCH4V TGCA 3 cut(s) 380, 395, 614
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 6 cut(s) 240, 269, 288, 354, 483, 567
HpySE526I ACGT 1 cut(s) 630
Hsp92II CATG 3 cut(s) 120, 421, 532
Kzo9I GATC 2 cut(s) 368, 491
LmnI GCTCC 3 cut(s) 4, 93, 275
Lsp1109I GCAGC 1 cut(s) 199
MaeII ACGT 1 cut(s) 630
MaeIII GTNAC 1 cut(s) 361
MalI GATC 2 cut(s) 370, 493
MboI GATC 2 cut(s) 368, 491
MboII GAAGA 3 cut(s) 8, 52, 305
MflI RGATCY 1 cut(s) 368
MhlI GDGCHC 2 cut(s) 9, 268
MlsI TGGCCA 1 cut(s) 644
MluCI AATT 4 cut(s) 100, 296, 635, 678
MluNI TGGCCA 1 cut(s) 644
MlyI GAGTC 1 cut(s) 600
MmeI TCCRAC 2 cut(s) 489, 606
Mox20I TGGCCA 1 cut(s) 644
MscI TGGCCA 1 cut(s) 644
MseI TTAA 2 cut(s) 203, 691
MslI CAYNNNNRTG 3 cut(s) 121, 224, 416
Msp20I TGGCCA 1 cut(s) 644
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 1 cut(s) 373
MspR9I CCNGG 2 cut(s) 373, 374
MwoI GCNNNNNNNGC 1 cut(s) 52
NciI CCSGG 2 cut(s) 373, 374
NdeI CATATG 1 cut(s) 577
NdeII GATC 2 cut(s) 368, 491
NlaIII CATG 3 cut(s) 120, 421, 532
NlaIV GGNNCC 2 cut(s) 89, 370
NmuCI GTSAC 1 cut(s) 361
NspI RCATGY 1 cut(s) 532
PaeI GCATGC 1 cut(s) 532
PagI TCATGA 1 cut(s) 417
PkrI GCNGC 1 cut(s) 214
PleI GAGTC 1 cut(s) 599
PpsI GAGTC 1 cut(s) 599
Psp124BI GAGCTC 2 cut(s) 9, 268
PspN4I GGNNCC 2 cut(s) 89, 370
PstNI CAGNNNCTG 1 cut(s) 215
PsuI RGATCY 1 cut(s) 368
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 3 cut(s) 121, 224, 416
SacI GAGCTC 2 cut(s) 9, 268
SaqAI TTAA 2 cut(s) 203, 691
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 2 cut(s) 368, 491
ScaI AGTACT 1 cut(s) 326
SchI GAGTC 1 cut(s) 600
ScrFI CCNGG 2 cut(s) 373, 374
SduI GDGCHC 2 cut(s) 9, 268
SetI ASST 9 cut(s) 9, 111, 214, 268, 289, 342, 573, 633, 691
SmaI CCCGGG 1 cut(s) 374
SmiMI CAYNNNNRTG 3 cut(s) 121, 224, 416
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
SphI GCATGC 1 cut(s) 532
Sse9I AATT 4 cut(s) 100, 296, 635, 678
SsiI CCGC 1 cut(s) 532
SstI GAGCTC 2 cut(s) 9, 268
StyD4I CCNGG 2 cut(s) 371, 372
TaiI ACGT 1 cut(s) 633
TasI AATT 4 cut(s) 100, 296, 635, 678
TatI WGTACW 1 cut(s) 324
Tru1I TTAA 2 cut(s) 203, 691
Tru9I TTAA 2 cut(s) 203, 691
TscAI CASTG 1 cut(s) 366
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 2 cut(s) 374, 406
TspGWI ACGGA 1 cut(s) 477
TspMI CCCGGG 1 cut(s) 372
TspRI CASTG 1 cut(s) 366
XapI RAATTY 2 cut(s) 100, 296
XceI RCATGY 1 cut(s) 532
XmaI CCCGGG 1 cut(s) 372
XmiI GTMKAC 1 cut(s) 427
ZrmI AGTACT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.