Rw1G012870

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0009456
Physical Location & Seq
Reverse (-)
28596153 .. 28604210
8058 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G012870.1

Sequence Viewer

Length: 633 bp
ATGGAGTTGAAGACCTTTTTGGCTTCTGAGAGGTTTGGAGAGCTCTGTTGGTTAAGTGTTCATGAACACTCAATCTTCCTTTTCCCTTTTTTTCGCCTGCCTCGACGAGCATCGCTTCGTCTCTGCTGCCAGAATCGCTGCCGACGACTCCTCCTCCGACGCCGAAGCAACATTCAAATCCATAGGCACGCCTTCGTCTCCCTCAAGCCCTTCAATTCCAGGCAGAAAATCCAAATAAATTCTTTATCAGTAATCTCTTATTTAGATTCCATGCCTTTGTTGTTTAAGTTTACAACTCTGCCATTAATGTACTATGACTTGAAGGTTGGGAATGGAACTGAGGCAGTGACAGGATCCCGGGTTGCAGTTCATTTTGTTGCAAAGTGGAAGGGTATCACTTTCATGACAAGTAGACAAGGACTTGGTGTTGGTGGAGGAATGGTAAGGATAGATTGCCAATCTGAGAAGGGATCAGTCCTCAAGGGGTTAGATATTGGTGTAAAAGGCATGCGGGTAGGAGTCCAGGTATTCTTTGTTCCTCAACGATTGCTTATAGTTCCTCCTGAGCTGGCATATGGAAGCAAAGGAGTCCAAGAAATCCCTCCAAATGCAACAATAGAGTTTTTATTGTAG

Protein Analysis

210

Amino Acids

23.83

Weight (kDa)

10.29

Isoelectric Point (pI)

47.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 114 - 208 3.4e-14 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 412
AciI CCGC 1 cut(s) 511
AclWI GGATC 3 cut(s) 348, 361, 478
AcsI RAATTY 1 cut(s) 238
AcyI GRCGYC 1 cut(s) 160
AfaI GTAC 1 cut(s) 311
AgsI TTSAA 4 cut(s) 10, 176, 214, 322
AjnI CCWGG 2 cut(s) 218, 522
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AluBI AGCT 2 cut(s) 43, 568
AluI AGCT 2 cut(s) 43, 568
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 2 cut(s) 125, 202
AlwI GGATC 3 cut(s) 348, 361, 478
Ama87I CYCGRG 1 cut(s) 357
ApeKI GCWGC 2 cut(s) 126, 138
ApoI RAATTY 1 cut(s) 238
AseI ATTAAT 1 cut(s) 305
AsuC2I CCSGG 2 cut(s) 358, 359
AvaI CYCGRG 1 cut(s) 357
BamHI GGATCC 1 cut(s) 353
BanII GRGCYC 1 cut(s) 45
BbsI GAAGAC 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 2 cut(s) 113, 125
BciT130I CCWGG 2 cut(s) 220, 524
BcnI CCSGG 2 cut(s) 358, 359
BcoDI GTCTC 2 cut(s) 125, 202
BisI GCNGC 2 cut(s) 127, 139
BlsI GCNGC 2 cut(s) 128, 140
Bme1390I CCNGG 4 cut(s) 220, 358, 359, 524
BmeT110I CYCGRG 1 cut(s) 357
BmiI GGNNCC 1 cut(s) 355
BmrFI CCNGG 4 cut(s) 220, 358, 359, 524
BmsI GCATC 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 17
Bpu10I CCTNAGC 1 cut(s) 564
BpuEI CTTGAG 2 cut(s) 188, 464
BpuMI CCSGG 2 cut(s) 358, 359
BsaHI GRCGYC 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 357
BsaXI ACNNNNNCTCC 8 cut(s) 135, 138, 165, 168, 426, 456, 510, 540
BseBI CCWGG 2 cut(s) 220, 524
BseDI CCNNGG 1 cut(s) 357
BseMII CTCAG 4 cut(s) 18, 330, 453, 555
BseRI GAGGAG 2 cut(s) 140, 143
BseXI GCAGC 2 cut(s) 113, 125
BsiHKAI GWGCWC 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 357
BsiSI CCGG 1 cut(s) 358
BsmAI GTCTC 2 cut(s) 125, 202
BsmBI CGTCTC 2 cut(s) 125, 202
BsoBI CYCGRG 1 cut(s) 357
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 2 cut(s) 353, 470
BspACI CCGC 1 cut(s) 511
BspCNI CTCAG 4 cut(s) 19, 331, 454, 556
BspHI TCATGA 2 cut(s) 61, 402
BspLI GGNNCC 1 cut(s) 355
BspPI GGATC 3 cut(s) 348, 361, 478
BssECI CCNNGG 1 cut(s) 357
BssMI GATC 2 cut(s) 353, 470
BssNI GRCGYC 1 cut(s) 160
Bst2UI CCWGG 2 cut(s) 220, 524
BstACI GRCGYC 1 cut(s) 160
BstC8I GCNNGC 4 cut(s) 98, 189, 509, 570
BstDEI CTNAG 4 cut(s) 27, 339, 462, 564
BstKTI GATC 2 cut(s) 356, 473
BstMAI GTCTC 2 cut(s) 125, 202
BstMBI GATC 2 cut(s) 353, 470
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstNI CCWGG 2 cut(s) 220, 524
BstNSI RCATGY 1 cut(s) 511
BstSCI CCNGG 4 cut(s) 218, 356, 357, 522
BstV1I GCAGC 2 cut(s) 113, 125
BstV2I GAAGAC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
BtgZI GCGATG 1 cut(s) 96
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 351
Cac8I GCNNGC 4 cut(s) 98, 189, 509, 570
CciI TCATGA 2 cut(s) 61, 402
Cfr9I CCCGGG 1 cut(s) 357
CseI GACGC 1 cut(s) 168
Csp6I GTAC 1 cut(s) 310
CviAII CATG 4 cut(s) 62, 271, 403, 508
CviJI RGCY 4 cut(s) 23, 43, 208, 568
CviKI_1 RGCY 4 cut(s) 23, 43, 208, 568
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 4 cut(s) 27, 339, 462, 564
DpnI GATC 2 cut(s) 355, 472
DpnII GATC 2 cut(s) 353, 470
Ecl136II GAGCTC 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 45
Eco53kI GAGCTC 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 357
EcoICRI GAGCTC 1 cut(s) 43
EcoRII CCWGG 2 cut(s) 218, 522
EcoT38I GRGCYC 1 cut(s) 45
Esp3I CGTCTC 2 cut(s) 125, 202
FaeI CATG 4 cut(s) 65, 274, 406, 511
FaiI YATR 9 cut(s) 63, 183, 272, 315, 404, 509, 554, 574, 576
FatI CATG 4 cut(s) 61, 270, 402, 507
FauI CCCGC 1 cut(s) 504
FauNDI CATATG 1 cut(s) 574
FblI GTMKAC 1 cut(s) 412
Fnu4HI GCNGC 2 cut(s) 127, 139
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 2 cut(s) 127, 139
GluI GCNGC 2 cut(s) 127, 139
HapII CCGG 1 cut(s) 358
HgaI GACGC 1 cut(s) 168
Hin1I GRCGYC 1 cut(s) 160
Hin1II CATG 4 cut(s) 65, 274, 406, 511
HinfI GANTC 5 cut(s) 133, 147, 266, 519, 588
HpaII CCGG 1 cut(s) 358
Hpy166II GTNNAC 2 cut(s) 291, 413
Hpy188I TCNGA 3 cut(s) 28, 158, 463
Hpy188III TCNNGA 3 cut(s) 62, 403, 563
Hpy8I GTNNAC 2 cut(s) 291, 413
Hpy99I CGWCG 3 cut(s) 108, 147, 162
HpyAV CCTTC 5 cut(s) 202, 220, 316, 382, 460
HpyCH4V TGCA 3 cut(s) 365, 380, 611
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
HpyF3I CTNAG 4 cut(s) 27, 339, 462, 564
Hsp92I GRCGYC 1 cut(s) 160
Hsp92II CATG 4 cut(s) 65, 274, 406, 511
Kzo9I GATC 2 cut(s) 353, 470
Lsp1109I GCAGC 2 cut(s) 113, 125
LweI GCATC 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 346
MalI GATC 2 cut(s) 355, 472
MboI GATC 2 cut(s) 353, 470
MboII GAAGA 2 cut(s) 22, 67
MflI RGATCY 1 cut(s) 353
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 2 cut(s) 214, 238
MlyI GAGTC 3 cut(s) 141, 528, 597
MmeI TCCRAC 1 cut(s) 181
MseI TTAA 3 cut(s) 53, 285, 305
MslI CAYNNNNRTG 1 cut(s) 401
MspI CCGG 1 cut(s) 358
MspR9I CCNGG 4 cut(s) 220, 358, 359, 524
MvaI CCWGG 2 cut(s) 220, 524
MwoI GCNNNNNNNGC 1 cut(s) 135
NciI CCSGG 2 cut(s) 358, 359
NdeI CATATG 1 cut(s) 574
NdeII GATC 2 cut(s) 353, 470
NlaIII CATG 4 cut(s) 65, 274, 406, 511
NlaIV GGNNCC 1 cut(s) 355
NmuCI GTSAC 1 cut(s) 346
NspI RCATGY 1 cut(s) 511
PaeI GCATGC 1 cut(s) 511
PagI TCATGA 2 cut(s) 61, 402
PcsI WCGNNNNNNNCGW 2 cut(s) 100, 142
PfeI GAWTC 2 cut(s) 133, 266
PkrI GCNGC 2 cut(s) 128, 140
PleI GAGTC 3 cut(s) 141, 527, 596
PpsI GAGTC 3 cut(s) 141, 527, 596
PshBI ATTAAT 1 cut(s) 305
Psp124BI GAGCTC 1 cut(s) 45
Psp6I CCWGG 2 cut(s) 218, 522
PspGI CCWGG 2 cut(s) 218, 522
PspN4I GGNNCC 1 cut(s) 355
PsrI GAACNNNNNNTAC 2 cut(s) 519, 551
PsuI RGATCY 1 cut(s) 353
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
RseI CAYNNNNRTG 1 cut(s) 401
SacI GAGCTC 1 cut(s) 45
SaqAI TTAA 3 cut(s) 53, 285, 305
SatI GCNGC 2 cut(s) 127, 139
Sau3AI GATC 2 cut(s) 353, 470
SchI GAGTC 3 cut(s) 141, 528, 597
ScrFI CCNGG 4 cut(s) 220, 358, 359, 524
SduI GDGCHC 1 cut(s) 45
SetI ASST 6 cut(s) 17, 35, 45, 327, 528, 570
SfaNI GCATC 1 cut(s) 119
SmaI CCCGGG 1 cut(s) 359
SmiMI CAYNNNNRTG 1 cut(s) 401
SmlI CTYRAG 2 cut(s) 203, 479
SmoI CTYRAG 2 cut(s) 203, 479
SphI GCATGC 1 cut(s) 511
Sse9I AATT 2 cut(s) 214, 238
SsiI CCGC 1 cut(s) 511
SstI GAGCTC 1 cut(s) 45
StyD4I CCNGG 4 cut(s) 218, 356, 357, 522
TaqI TCGA 1 cut(s) 103
TasI AATT 2 cut(s) 214, 238
TatI WGTACW 1 cut(s) 309
TfiI GAWTC 2 cut(s) 133, 266
Tru1I TTAA 3 cut(s) 53, 285, 305
Tru9I TTAA 3 cut(s) 53, 285, 305
TscAI CASTG 1 cut(s) 351
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 2 cut(s) 126, 138
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 4 cut(s) 50, 78, 359, 391
TspMI CCCGGG 1 cut(s) 357
TspRI CASTG 1 cut(s) 351
VspI ATTAAT 1 cut(s) 305
XapI RAATTY 1 cut(s) 238
XceI RCATGY 1 cut(s) 511
XmaI CCCGGG 1 cut(s) 357
XmiI GTMKAC 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.