AT3G10060

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009456
Physical Location & Seq
Forward (+)
3102074 .. 3104014
1941 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G10060.1

Sequence Viewer

Length: 693 bp
ATGATCTTAACAATGAAACTTGTTCACCCTCTCCATCACTCTTTGTCTTCCTCCATTCCCTTTCCCTCAAGAAAAAGGCAATCCAAACCGTACCGGTGCTCGTTACCTTCTCCCGGCTGCGAAAAGGTCATCAGAACAGAGACTGTCCTGCCTCCGGCGCCGGTGAGTTGTGAAGGGAGAAGGGTCTTACTTGGATGTCTTCTCGCTACAGCTTCTGGGATTTTGTCAACTGGTTCAGCCGAGGCAGTAAGCACCAGTAGAAGAGCTCTACGTGCATCCAAGTTACCGGAAAGCGATTTCACGACTCTCCCCAATGGTCTCAAGTACTATGATATAAAGGTTGGCAATGGAGCAGAGGCTGTGAAAGGATCTCGGGTCGCAGTTCACTATGTTGCAAAATGGAAAGGGATAACGTTCATGACAAGTCGACAAGGACTTGGTGTTGGAGGTGGAACGCCTTATGGGTTTGACGTTGGTCAATCAGAGAGAGGCAATGTTCTGAAAGGACTTGATCTTGGTGTTGAAGGGATGCGTGTAGGCGGTCAGAGATTGGTGATTGTTCCTCCCGAGCTGGCTTACGGGAAGAAAGGAGTGCAAGAGATTCCTCCAAACGCTACGATAGAGCTTGACATTGAGCTGTTATCAATCAAGCAGAGTCCTTTCGGGACGCCAGTGAAGATAGTTGAAGGCTAA

Protein Analysis

230

Amino Acids

24.5

Weight (kDa)

9.67

Isoelectric Point (pI)

53.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 119 - 214 1.6e-22 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 157
AccI GTMKAC 1 cut(s) 427
AciI CCGC 1 cut(s) 540
AclI AACGTT 1 cut(s) 413
AclWI GGATC 1 cut(s) 376
AcyI GRCGYC 2 cut(s) 158, 668
AfaI GTAC 2 cut(s) 92, 326
AfiI CCNNNNNNNGG 2 cut(s) 113, 154
AgeI ACCGGT 1 cut(s) 93
AgsI TTSAA 2 cut(s) 524, 686
AluBI AGCT 5 cut(s) 212, 266, 571, 625, 637
AluI AGCT 5 cut(s) 212, 266, 571, 625, 637
Alw21I GWGCWC 2 cut(s) 101, 268
Alw26I GTCTC 2 cut(s) 134, 323
AlwI GGATC 1 cut(s) 376
AlwNI CAGNNNCTG 3 cut(s) 143, 215, 359
Ama87I CYCGRG 2 cut(s) 372, 566
ApeKI GCWGC 1 cut(s) 117
AsiGI ACCGGT 1 cut(s) 93
AspLEI GCGC 1 cut(s) 160
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 3 cut(s) 17, 175, 565
AvaI CYCGRG 2 cut(s) 372, 566
BanI GGYRCC 1 cut(s) 157
BanII GRGCYC 1 cut(s) 268
BbsI GAAGAC 2 cut(s) 39, 191
Bbv12I GWGCWC 2 cut(s) 101, 268
BbvI GCAGC 1 cut(s) 104
BccI CCATC 1 cut(s) 42
BcnI CCSGG 1 cut(s) 114
BcoDI GTCTC 2 cut(s) 134, 323
BfmI CTRYAG 1 cut(s) 207
BfoI RGCGCY 1 cut(s) 161
BisI GCNGC 1 cut(s) 118
BlsI GCNGC 1 cut(s) 119
BmcAI AGTACT 1 cut(s) 326
Bme1390I CCNGG 1 cut(s) 114
BmeT110I CYCGRG 2 cut(s) 372, 566
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 2 cut(s) 284, 519
BoxI GACNNNNGTC 1 cut(s) 474
BpiI GAAGAC 2 cut(s) 39, 191
BpuEI CTTGAG 2 cut(s) 52, 305
BpuMI CCSGG 1 cut(s) 114
BsaAI YACGTR 1 cut(s) 272
BsaHI GRCGYC 2 cut(s) 158, 668
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 240
BsaWI WCCGGW 2 cut(s) 93, 286
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 154
Bse118I RCCGGY 2 cut(s) 93, 160
Bse1I ACTGG 3 cut(s) 235, 255, 671
Bse3DI GCAATG 2 cut(s) 352, 499
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 3 cut(s) 200, 275, 534
BseLI CCNNNNNNNGG 2 cut(s) 113, 154
BseMI GCAATG 2 cut(s) 352, 499
BseNI ACTGG 3 cut(s) 235, 255, 671
BseXI GCAGC 1 cut(s) 104
BshNI GGYRCC 1 cut(s) 157
BshTI ACCGGT 1 cut(s) 93
BsiHKAI GWGCWC 2 cut(s) 101, 268
BsiHKCI CYCGRG 2 cut(s) 372, 566
BsiSI CCGG 5 cut(s) 94, 114, 155, 161, 287
BslFI GGGAC 1 cut(s) 679
BslI CCNNNNNNNGG 2 cut(s) 113, 154
BsmAI GTCTC 2 cut(s) 134, 323
BsmFI GGGAC 1 cut(s) 679
Bso31I GGTCTC 1 cut(s) 323
BsoBI CYCGRG 2 cut(s) 372, 566
Bsp1286I GDGCHC 2 cut(s) 101, 268
Bsp143I GATC 3 cut(s) 3, 368, 511
BspACI CCGC 1 cut(s) 540
BspHI TCATGA 1 cut(s) 417
BspLI GGNNCC 1 cut(s) 159
BspPI GGATC 1 cut(s) 376
BspQI GCTCTTC 1 cut(s) 256
BspT107I GGYRCC 1 cut(s) 157
BspTNI GGTCTC 1 cut(s) 323
BsrDI GCAATG 2 cut(s) 352, 499
BsrFI RCCGGY 2 cut(s) 93, 160
BsrI ACTGG 3 cut(s) 235, 255, 671
BssAI RCCGGY 2 cut(s) 93, 160
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 3 cut(s) 3, 368, 511
BssNI GRCGYC 2 cut(s) 158, 668
Bst4CI ACNGT 2 cut(s) 90, 145
Bst6I CTCTTC 1 cut(s) 256
BstACI GRCGYC 2 cut(s) 158, 668
BstBAI YACGTR 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 573
BstF5I GGATG 3 cut(s) 200, 275, 534
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 3 cut(s) 6, 371, 514
BstMAI GTCTC 2 cut(s) 134, 323
BstMBI GATC 3 cut(s) 3, 368, 511
BstMWI GCNNNNNNNGC 2 cut(s) 157, 272
BstPAI GACNNNNGTC 1 cut(s) 474
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 1 cut(s) 207
BstV1I GCAGC 1 cut(s) 104
BstV2I GAAGAC 2 cut(s) 39, 191
BstX2I RGATCY 1 cut(s) 368
BstYI RGATCY 1 cut(s) 368
BtsCI GGATG 3 cut(s) 200, 275, 534
BtsIMutI CAGTG 1 cut(s) 678
Cac8I GCNNGC 1 cut(s) 573
CaiI CAGNNNCTG 3 cut(s) 143, 215, 359
CciI TCATGA 1 cut(s) 417
CfoI GCGC 1 cut(s) 160
Cfr10I RCCGGY 2 cut(s) 93, 160
CseI GACGC 1 cut(s) 676
Csp6I GTAC 2 cut(s) 91, 325
CspAI ACCGGT 1 cut(s) 93
CviAII CATG 1 cut(s) 418
CviQI GTAC 2 cut(s) 91, 325
DinI GGCGCC 1 cut(s) 159
DpnI GATC 3 cut(s) 5, 370, 513
DpnII GATC 3 cut(s) 3, 368, 511
Eam1104I CTCTTC 1 cut(s) 256
EarI CTCTTC 1 cut(s) 256
Ecl136II GAGCTC 1 cut(s) 266
Eco24I GRGCYC 1 cut(s) 268
Eco31I GGTCTC 1 cut(s) 323
Eco53kI GAGCTC 1 cut(s) 266
Eco88I CYCGRG 2 cut(s) 372, 566
EcoICRI GAGCTC 1 cut(s) 266
EcoT38I GRGCYC 1 cut(s) 268
EgeI GGCGCC 1 cut(s) 159
EheI GGCGCC 1 cut(s) 159
FaeI CATG 1 cut(s) 421
FaiI YATR 5 cut(s) 330, 335, 390, 419, 462
FaqI GGGAC 1 cut(s) 679
FatI CATG 1 cut(s) 417
FblI GTMKAC 1 cut(s) 427
Fnu4HI GCNGC 1 cut(s) 118
FokI GGATG 3 cut(s) 207, 262, 541
FriOI GRGCYC 1 cut(s) 268
Fsp4HI GCNGC 1 cut(s) 118
GlaI GCGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 118
HaeII RGCGCY 1 cut(s) 161
HapII CCGG 5 cut(s) 94, 114, 155, 161, 287
HgaI GACGC 1 cut(s) 676
HhaI GCGC 1 cut(s) 160
Hin1I GRCGYC 2 cut(s) 158, 668
Hin1II CATG 1 cut(s) 421
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HincII GTYRAC 2 cut(s) 228, 428
HindII GTYRAC 2 cut(s) 228, 428
HinfI GANTC 3 cut(s) 304, 601, 655
HpaII CCGG 5 cut(s) 94, 114, 155, 161, 287
HphI GGTGA 3 cut(s) 17, 175, 565
Hpy166II GTNNAC 4 cut(s) 25, 228, 385, 428
Hpy188I TCNGA 4 cut(s) 134, 484, 501, 546
Hpy188III TCNNGA 5 cut(s) 69, 301, 418, 566, 664
Hpy8I GTNNAC 4 cut(s) 25, 228, 385, 428
HpyAV CCTTC 5 cut(s) 117, 167, 174, 518, 680
HpyCH4III ACNGT 2 cut(s) 90, 145
HpyCH4IV ACGT 3 cut(s) 271, 413, 471
HpyCH4V TGCA 3 cut(s) 275, 395, 595
HpyF10VI GCNNNNNNNGC 2 cut(s) 157, 272
HpySE526I ACGT 3 cut(s) 271, 413, 471
Hsp92I GRCGYC 2 cut(s) 158, 668
Hsp92II CATG 1 cut(s) 421
HspAI GCGC 1 cut(s) 158
KasI GGCGCC 1 cut(s) 157
Kzo9I GATC 3 cut(s) 3, 368, 511
LguI GCTCTTC 1 cut(s) 256
LmnI GCTCC 1 cut(s) 350
Lsp1109I GCAGC 1 cut(s) 104
LweI GCATC 2 cut(s) 284, 519
MaeII ACGT 3 cut(s) 271, 413, 471
MaeIII GTNAC 2 cut(s) 102, 282
MalI GATC 3 cut(s) 5, 370, 513
MboI GATC 3 cut(s) 3, 368, 511
MboII GAAGA 5 cut(s) 39, 191, 273, 595, 688
MflI RGATCY 1 cut(s) 368
MhlI GDGCHC 2 cut(s) 101, 268
Mly113I GGCGCC 1 cut(s) 158
MlyI GAGTC 2 cut(s) 298, 664
MmeI TCCRAC 1 cut(s) 424
MseI TTAA 1 cut(s) 8
MspI CCGG 5 cut(s) 94, 114, 155, 161, 287
MspR9I CCNGG 1 cut(s) 114
MwoI GCNNNNNNNGC 2 cut(s) 157, 272
NarI GGCGCC 1 cut(s) 158
NciI CCSGG 1 cut(s) 114
NdeII GATC 3 cut(s) 3, 368, 511
NlaIII CATG 1 cut(s) 421
NlaIV GGNNCC 1 cut(s) 159
NmeAIII GCCGAG 1 cut(s) 265
PagI TCATGA 1 cut(s) 417
PciSI GCTCTTC 1 cut(s) 256
PfeI GAWTC 1 cut(s) 601
PinAI ACCGGT 1 cut(s) 93
PkrI GCNGC 1 cut(s) 119
PleI GAGTC 2 cut(s) 298, 663
PluTI GGCGCC 1 cut(s) 161
PpsI GAGTC 2 cut(s) 298, 663
Ppu21I YACGTR 1 cut(s) 272
PshAI GACNNNNGTC 1 cut(s) 474
Psp124BI GAGCTC 1 cut(s) 268
Psp1406I AACGTT 1 cut(s) 413
PspN4I GGNNCC 1 cut(s) 159
PstNI CAGNNNCTG 3 cut(s) 143, 215, 359
PsuI RGATCY 1 cut(s) 368
RsaI GTAC 2 cut(s) 92, 326
RsaNI GTAC 2 cut(s) 91, 325
SacI GAGCTC 1 cut(s) 268
SalI GTCGAC 1 cut(s) 426
SapI GCTCTTC 1 cut(s) 256
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 1 cut(s) 118
Sau3AI GATC 3 cut(s) 3, 368, 511
ScaI AGTACT 1 cut(s) 326
SchI GAGTC 2 cut(s) 298, 664
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 2 cut(s) 101, 268
SfaNI GCATC 2 cut(s) 284, 519
SfcI CTRYAG 1 cut(s) 207
SfoI GGCGCC 1 cut(s) 159
SgrAI CRCCGGYG 1 cut(s) 160
SmlI CTYRAG 2 cut(s) 67, 320
SmoI CTYRAG 2 cut(s) 67, 320
SsiI CCGC 1 cut(s) 540
SspDI GGCGCC 1 cut(s) 157
SstI GAGCTC 1 cut(s) 268
StyD4I CCNGG 1 cut(s) 112
TaaI ACNGT 2 cut(s) 90, 145
TaiI ACGT 3 cut(s) 274, 416, 474
TaqI TCGA 1 cut(s) 427
TatI WGTACW 1 cut(s) 324
TfiI GAWTC 1 cut(s) 601
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TscAI CASTG 1 cut(s) 678
TseI GCWGC 1 cut(s) 117
TspDTI ATGAA 2 cut(s) 29, 406
TspRI CASTG 1 cut(s) 678
XmiI GTMKAC 1 cut(s) 427
ZrmI AGTACT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.