FvH4_6g17331

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0009456
Physical Location & Seq
Reverse (-)
11258926 .. 11263197
4272 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g17331.t1

Sequence Viewer

Length: 693 bp
ATGGAGCTCTTCTTTCTTCACAACCCTACTGTGCTGCACAAGCCTCTCTTCTCTGTGCCCATCACAGTCAAGACGCTCCCCAAGAGGAATTCACAGGTCTTACCATGTCAATGCTCATCTTCTTCCTCATCAGATGATGATACAAAACCAACCAGCCAATCATTACACTCTGAGGGAAGGAGGGCTTTGATTGGCTCTCTCTTAACATCAGCTGCTGGTATTTATGTGTGTGATGTGGCTGAGGCTGTCAGCACAAGTAGGAGAGCTCTAAGAGGATCAAAAATACCTCTGGAGGAATTTACAACCCTTCCCAATGGTTTAAAGTACTATGACTTGAAGGTTGGGAATGGAGCTGAGGCAGTGAAGGGATCGCGGGTTGCAGTTCATTATGTCGCAAAGTGGAAGGGTATCACTTTCATGACAAGTAGACAAGGACTTGGTGTTGGTGGAGGAACGCCATACGGATTTGATGTAGGCCAATCTGAGAGGGGATCAGTCCTCAAGGGGTTAGATATTGGTGTAAAAGGCATGCGGGTAGGAGGCCAGCGATTGCTTATAGTTCCTCCAGAGCTGGCATATGGAAGCAAAGGAGTCCAGGAAATCCCTCCAAATGCAACAATAGAGTTGGACGTTGAGTTACTGGCCATCAAACAAAGCCCATTTGGGTCTCCTGTTAAAATAGTTGAAGGTTAA

Protein Analysis

231

Amino Acids

24.49

Weight (kDa)

9.24

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 119 - 214 1.2e-22 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 427
AccII CGCG 1 cut(s) 373
AciI CCGC 2 cut(s) 373, 532
AclWI GGATC 3 cut(s) 283, 376, 499
AcoI YGGCCR 1 cut(s) 642
AcsI RAATTY 2 cut(s) 88, 296
AfaI GTAC 1 cut(s) 326
AgsI TTSAA 2 cut(s) 337, 686
AjnI CCWGG 1 cut(s) 594
AluBI AGCT 5 cut(s) 7, 212, 266, 353, 571
AluI AGCT 5 cut(s) 7, 212, 266, 353, 571
Alw21I GWGCWC 2 cut(s) 9, 268
Alw26I GTCTC 1 cut(s) 672
AlwI GGATC 3 cut(s) 283, 376, 499
AlwNI CAGNNNCTG 1 cut(s) 215
AoxI GGCC 3 cut(s) 475, 541, 642
ApeKI GCWGC 2 cut(s) 34, 212
ApoI RAATTY 2 cut(s) 88, 296
BaeGI GKGCMC 1 cut(s) 60
BalI TGGCCA 1 cut(s) 644
BanII GRGCYC 2 cut(s) 9, 268
Bbv12I GWGCWC 2 cut(s) 9, 268
BbvCI CCTCAGC 2 cut(s) 240, 354
BbvI GCAGC 2 cut(s) 21, 199
BccI CCATC 2 cut(s) 68, 653
BciT130I CCWGG 1 cut(s) 596
BcoDI GTCTC 1 cut(s) 672
BisI GCNGC 2 cut(s) 35, 213
BlsI GCNGC 2 cut(s) 36, 214
BmcAI AGTACT 1 cut(s) 326
Bme1390I CCNGG 1 cut(s) 596
BmrFI CCNGG 1 cut(s) 596
BpmI CTGGAG 2 cut(s) 311, 549
Bpu10I CCTNAGC 2 cut(s) 240, 354
BpuEI CTTGAG 1 cut(s) 485
BsaI GGTCTC 1 cut(s) 672
Bse1I ACTGG 1 cut(s) 645
BseBI CCWGG 1 cut(s) 596
BseMII CTCAG 4 cut(s) 162, 231, 345, 474
BseNI ACTGG 1 cut(s) 645
BseSI GKGCMC 1 cut(s) 60
BseXI GCAGC 2 cut(s) 21, 199
BsgI GTGCAG 1 cut(s) 20
Bsh1236I CGCG 1 cut(s) 373
BshFI GGCC 3 cut(s) 477, 543, 644
BsiHKAI GWGCWC 2 cut(s) 9, 268
BsmAI GTCTC 1 cut(s) 672
BsnI GGCC 3 cut(s) 477, 543, 644
Bso31I GGTCTC 1 cut(s) 672
Bsp1286I GDGCHC 3 cut(s) 9, 60, 268
Bsp143I GATC 3 cut(s) 275, 368, 491
BspACI CCGC 2 cut(s) 373, 532
BspANI GGCC 3 cut(s) 477, 543, 644
BspCNI CTCAG 4 cut(s) 163, 232, 346, 475
BspFNI CGCG 1 cut(s) 373
BspHI TCATGA 1 cut(s) 417
BspPI GGATC 3 cut(s) 283, 376, 499
BspQI GCTCTTC 1 cut(s) 14
BspTNI GGTCTC 1 cut(s) 672
BsrI ACTGG 1 cut(s) 645
BssMI GATC 3 cut(s) 275, 368, 491
Bst2UI CCWGG 1 cut(s) 596
Bst4CI ACNGT 2 cut(s) 31, 67
Bst6I CTCTTC 2 cut(s) 14, 53
BstC8I GCNNGC 3 cut(s) 530, 545, 573
BstDEI CTNAG 5 cut(s) 171, 240, 269, 354, 483
BstFNI CGCG 1 cut(s) 373
BstKTI GATC 3 cut(s) 278, 371, 494
BstMAI GTCTC 1 cut(s) 672
BstMBI GATC 3 cut(s) 275, 368, 491
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNI CCWGG 1 cut(s) 596
BstNSI RCATGY 1 cut(s) 532
BstSCI CCNGG 1 cut(s) 594
BstSLI GKGCMC 1 cut(s) 60
BstUI CGCG 1 cut(s) 373
BstV1I GCAGC 2 cut(s) 21, 199
BsuRI GGCC 3 cut(s) 477, 543, 644
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 1 cut(s) 366
Cac8I GCNNGC 3 cut(s) 530, 545, 573
CaiI CAGNNNCTG 1 cut(s) 215
CciI TCATGA 1 cut(s) 417
CseI GACGC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 325
CviAII CATG 3 cut(s) 105, 418, 529
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 5 cut(s) 171, 240, 269, 354, 483
DpnI GATC 3 cut(s) 277, 370, 493
DpnII GATC 3 cut(s) 275, 368, 491
DraI TTTAAA 1 cut(s) 321
EaeI YGGCCR 1 cut(s) 642
Eam1104I CTCTTC 2 cut(s) 14, 53
EarI CTCTTC 2 cut(s) 14, 53
Ecl136II GAGCTC 2 cut(s) 7, 266
Eco24I GRGCYC 2 cut(s) 9, 268
Eco31I GGTCTC 1 cut(s) 672
Eco53kI GAGCTC 2 cut(s) 7, 266
EcoICRI GAGCTC 2 cut(s) 7, 266
EcoRI GAATTC 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 594
EcoT38I GRGCYC 2 cut(s) 9, 268
FaeI CATG 3 cut(s) 108, 421, 532
FalI AAGNNNNNCTT 4 cut(s) 32, 64, 169, 201
FatI CATG 3 cut(s) 104, 417, 528
FauI CCCGC 2 cut(s) 366, 525
FauNDI CATATG 1 cut(s) 577
FblI GTMKAC 1 cut(s) 427
Fnu4HI GCNGC 2 cut(s) 35, 213
FriOI GRGCYC 2 cut(s) 9, 268
Fsp4HI GCNGC 2 cut(s) 35, 213
GluI GCNGC 2 cut(s) 35, 213
GsuI CTGGAG 2 cut(s) 311, 549
HaeIII GGCC 3 cut(s) 477, 543, 644
HgaI GACGC 1 cut(s) 82
Hin1II CATG 3 cut(s) 108, 421, 532
HinfI GANTC 1 cut(s) 591
Hpy166II GTNNAC 1 cut(s) 428
Hpy188I TCNGA 3 cut(s) 133, 172, 484
Hpy188III TCNNGA 4 cut(s) 70, 290, 418, 566
Hpy8I GTNNAC 1 cut(s) 428
HpyAV CCTTC 6 cut(s) 171, 317, 331, 358, 397, 680
HpyCH4III ACNGT 2 cut(s) 31, 67
HpyCH4IV ACGT 1 cut(s) 630
HpyCH4V TGCA 3 cut(s) 37, 380, 614
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 5 cut(s) 171, 240, 269, 354, 483
HpySE526I ACGT 1 cut(s) 630
Hsp92II CATG 3 cut(s) 108, 421, 532
Kzo9I GATC 3 cut(s) 275, 368, 491
LguI GCTCTTC 1 cut(s) 14
LmnI GCTCC 3 cut(s) 4, 81, 350
Lsp1109I GCAGC 2 cut(s) 21, 199
MaeII ACGT 1 cut(s) 630
MaeIII GTNAC 1 cut(s) 636
MalI GATC 3 cut(s) 277, 370, 493
MboI GATC 3 cut(s) 275, 368, 491
MboII GAAGA 4 cut(s) 8, 40, 111, 114
MhlI GDGCHC 3 cut(s) 9, 60, 268
MlsI TGGCCA 1 cut(s) 644
MluCI AATT 2 cut(s) 88, 296
MluNI TGGCCA 1 cut(s) 644
MlyI GAGTC 1 cut(s) 600
MmeI TCCRAC 1 cut(s) 606
Mox20I TGGCCA 1 cut(s) 644
MscI TGGCCA 1 cut(s) 644
MseI TTAA 4 cut(s) 203, 320, 675, 691
MslI CAYNNNNRTG 2 cut(s) 109, 416
Msp20I TGGCCA 1 cut(s) 644
MspA1I CMGCKG 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 596
MvaI CCWGG 1 cut(s) 596
MvnI CGCG 1 cut(s) 373
MwoI GCNNNNNNNGC 1 cut(s) 40
NdeI CATATG 1 cut(s) 577
NdeII GATC 3 cut(s) 275, 368, 491
NlaIII CATG 3 cut(s) 108, 421, 532
NspI RCATGY 1 cut(s) 532
PaeI GCATGC 1 cut(s) 532
PagI TCATGA 1 cut(s) 417
PciSI GCTCTTC 1 cut(s) 14
PfoI TCCNGGA 1 cut(s) 594
PkrI GCNGC 2 cut(s) 36, 214
PleI GAGTC 1 cut(s) 599
PpsI GAGTC 1 cut(s) 599
Psp124BI GAGCTC 2 cut(s) 9, 268
Psp6I CCWGG 1 cut(s) 594
PspGI CCWGG 1 cut(s) 594
PstNI CAGNNNCTG 1 cut(s) 215
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 2 cut(s) 109, 416
SacI GAGCTC 2 cut(s) 9, 268
SapI GCTCTTC 1 cut(s) 14
SaqAI TTAA 4 cut(s) 203, 320, 675, 691
SatI GCNGC 2 cut(s) 35, 213
Sau3AI GATC 3 cut(s) 275, 368, 491
ScaI AGTACT 1 cut(s) 326
SchI GAGTC 1 cut(s) 600
ScrFI CCNGG 1 cut(s) 596
SduI GDGCHC 3 cut(s) 9, 60, 268
SmiMI CAYNNNNRTG 2 cut(s) 109, 416
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
SphI GCATGC 1 cut(s) 532
Sse9I AATT 2 cut(s) 88, 296
SsiI CCGC 2 cut(s) 373, 532
SstI GAGCTC 2 cut(s) 9, 268
StyD4I CCNGG 1 cut(s) 594
TaaI ACNGT 2 cut(s) 31, 67
TaiI ACGT 1 cut(s) 633
TasI AATT 2 cut(s) 88, 296
TatI WGTACW 1 cut(s) 324
Tru1I TTAA 4 cut(s) 203, 320, 675, 691
Tru9I TTAA 4 cut(s) 203, 320, 675, 691
TscAI CASTG 1 cut(s) 366
TseI GCWGC 2 cut(s) 34, 212
TspDTI ATGAA 2 cut(s) 374, 406
TspGWI ACGGA 1 cut(s) 477
TspRI CASTG 1 cut(s) 366
XapI RAATTY 2 cut(s) 88, 296
XceI RCATGY 1 cut(s) 532
XmiI GTMKAC 1 cut(s) 427
ZrmI AGTACT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.