RchiOBHm_Chr3g0471481

Protein CHUP1, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0014566
Physical Location & Seq
Reverse (-)
17317578 .. 17319161
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43722

Sequence Viewer

Length: 1284 bp
ATGGAGAGCTCAACATCAAAGGTAGAGATGTTGAAGCCAGTCCTGCTTAAAGCTGCGATTCCTTTAGCTTTGTCTGTGGCTGGTTTCATCTATGCCAGGATTCTGGCTCAAAGAAGTACTCATTCGAAAGAGTCTTTATTCGAAAGTGATCAGGTAAGCTCCTTGGAGACTAATTCTCAAGAGTCTAGAGATGAGGATAACTTTAATAGCTTTAGCTGTACATGCACACTTTCTATGGAAGAAAGTCTGGAGATTAATGATTATAAACCCAAATTGGAAGAAGAGATTTCACGCCTAAGAAGCCGTCTCGAAGATCACAGCTACTGTGACATGAAAGAGAGAGAATCAGCACTTATGGAGCTAAGGAACACGTTGTTATTGGAGATGGCTCGTGTTGAGTTCATGGATAGAGAGGTTTCGTTCATGGAGGCTGAGAGCCACAGGCTTGAGGAGTTGGTAGGAGAATATTTGAAGGTTTTGGAGCAATTTGAAGAGTGGAAATCAGAAAATCAATTGCTTCAGAGGCAGGTTAAGATGCTTATGACACAAGCAAGTGTGCAAGCAAGCACAATTCGAGAACAGGATTTGAAGCTTGAAGCCAGAGAAGCAGAAGTTGGGAGGGTTCATGATGAACTAGAAACAAGGAAAACAGTCGCCAAGACATTGGAGGATGAAATTGGGGAGCTAAGAATGATTTTGGACCAATTGCAGGATGAGAAAAAGGGGCTTTTGGAAAAACTTGAGTTGAAAGAAAATTCAGCTTCCTCAATCTCCGAGATTGAAGGAGAAAGGATCAAAATTGAGGACCGCACTCGGCTTTCAGAGGAATTAGAGCAGCTACAGAAGGATCGTGCAGCCGAGCATATGGAACTGATTAACCTGAGGTGGAGCAATGCTTGCTTAAGGCACGAGTTGATGAAGAACAATGCACAACAAGAACATGGTAATGAGCAGAAGAATAGTCATTTGGAAACAGATTCTGAAGTAAGCATAGAGATTGGAAATTATGGGCTTGAGCAAGAATTAGCTGCTGGCACGGCTTCGGAGCAAAATGTCAATGAGCCTTGCTTGGGAAATGTAAGCACTGATCAGGCTCGTTCGAAAAGGCGCAAGTTATTTGGAAGGCTTAAAAGATGGGTGGACGGCAGTGATCAGAAGGGCAGAGGAAGAGTAATGGATGAGAAAGAAAGGCGTGAAGAAGCAGTCAAGTGTTTTGGGAGGCATTCTGTTTCAGATGATGCAGAGGAACATCATCATACAAGGAGGTCTTGCTCTAGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

427

Amino Acids

49.28

Weight (kDa)

5.05

Isoelectric Point (pI)

55.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014566)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36650
fragaria_vesca FvH4_6g17340
malus_domestica MD12G1101400.v1.1
prunus_persica Prupe.7G122100_v2.0.a1
pyrus_communis pycom12g10010 pycom14g09380
rosa_chinensis RchiOBHm_Chr3g0471481
rosa_laevigata RLG00000024174
rosa_multiflora Rmu_sc0006582.1_g000006 Rmu_sc0030679.1_g000001
rosa_roxburghii Rroxscaffold_6G00409910
rosa_rugosa Rorug03G0118000
rosa_samantha Rh3AG168000 Rh3BG193500 Rh3CG184000 Rh3DG182000
rosa_wichuraiana Rw3G015830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 264
Acc36I ACCTGC 1 cut(s) 517
AciI CCGC 1 cut(s) 808
AclWI GGATC 2 cut(s) 800, 855
AcsI RAATTY 1 cut(s) 754
AcuI CTGAAG 2 cut(s) 503, 1002
AfaI GTAC 2 cut(s) 118, 220
AfiI CCNNNNNNNGG 2 cut(s) 709, 1070
AflII CTTAAG 1 cut(s) 901
AflIII ACRYGT 1 cut(s) 369
AgsI TTSAA 7 cut(s) 34, 472, 491, 589, 596, 748, 782
AjnI CCWGG 1 cut(s) 95
AjuI GAANNNNNNNTTGG 4 cut(s) 597, 629, 950, 982
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 2 cut(s) 161, 311
AlwI GGATC 2 cut(s) 800, 855
AlwNI CAGNNNCTG 2 cut(s) 324, 980
ApeKI GCWGC 4 cut(s) 53, 835, 854, 1028
ApoI RAATTY 1 cut(s) 754
AseI ATTAAT 1 cut(s) 255
AspLEI GCGC 1 cut(s) 1110
AspS9I GGNCC 2 cut(s) 700, 805
AsuII TTCGAA 3 cut(s) 125, 141, 1100
AvaII GGWCC 2 cut(s) 700, 805
AxyI CCTNAGG 1 cut(s) 881
BanII GRGCYC 1 cut(s) 11
BauI CACGAG 2 cut(s) 390, 908
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 4 cut(s) 40, 847, 866, 1015
BccI CCATC 2 cut(s) 379, 1128
BceAI ACGGC 3 cut(s) 288, 1053, 1159
BciT130I CCWGG 1 cut(s) 97
BclI TGATCA 3 cut(s) 148, 1087, 1150
BcoDI GTCTC 2 cut(s) 161, 311
BfaI CTAG 3 cut(s) 186, 635, 1275
BfmI CTRYAG 1 cut(s) 839
BfrI CTTAAG 1 cut(s) 901
BfuAI ACCTGC 1 cut(s) 517
BisI GCNGC 4 cut(s) 54, 836, 855, 1029
BlsI GCNGC 4 cut(s) 55, 837, 856, 1030
BmcAI AGTACT 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 2 cut(s) 700, 805
BmgT120I GGNCC 2 cut(s) 700, 805
BmrFI CCNGG 1 cut(s) 97
BmsI GCATC 2 cut(s) 525, 1228
BpmI CTGGAG 1 cut(s) 269
Bpu10I CCTNAGC 1 cut(s) 362
Bpu14I TTCGAA 3 cut(s) 125, 141, 1100
BpuEI CTTGAG 4 cut(s) 162, 467, 761, 1034
BsaJI CCNNGG 1 cut(s) 162
Bsc4I CCNNNNNNNGG 2 cut(s) 709, 1070
Bse1I ACTGG 1 cut(s) 38
Bse21I CCTNAGG 1 cut(s) 881
Bse3DI GCAATG 1 cut(s) 898
BseBI CCWGG 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 3 cut(s) 676, 718, 1183
BseLI CCNNNNNNNGG 2 cut(s) 709, 1070
BseMI GCAATG 1 cut(s) 898
BseMII CTCAG 2 cut(s) 423, 872
BseNI ACTGG 1 cut(s) 38
BseRI GAGGAG 1 cut(s) 464
BseXI GCAGC 4 cut(s) 40, 847, 866, 1015
BsgI GTGCAG 1 cut(s) 873
BsiHKAI GWGCWC 1 cut(s) 11
BslI CCNNNNNNNGG 2 cut(s) 709, 1070
BsmAI GTCTC 2 cut(s) 161, 311
BsmBI CGTCTC 1 cut(s) 311
BsmI GAATGC 1 cut(s) 1222
Bsp119I TTCGAA 3 cut(s) 125, 141, 1100
Bsp1286I GDGCHC 1 cut(s) 11
Bsp1407I TGTACA 1 cut(s) 218
Bsp143I GATC 6 cut(s) 148, 313, 792, 847, 1087, 1150
BspACI CCGC 1 cut(s) 808
BspCNI CTCAG 2 cut(s) 424, 873
BspHI TCATGA 1 cut(s) 625
BspMI ACCTGC 1 cut(s) 517
BspPI GGATC 2 cut(s) 800, 855
BspT104I TTCGAA 3 cut(s) 125, 141, 1100
BspTI CTTAAG 1 cut(s) 901
BsrDI GCAATG 1 cut(s) 898
BsrGI TGTACA 1 cut(s) 218
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 6 cut(s) 148, 313, 792, 847, 1087, 1150
BssSI CACGAG 2 cut(s) 390, 908
BssT1I CCWWGG 1 cut(s) 162
Bst2BI CACGAG 2 cut(s) 390, 908
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 2 cut(s) 326, 652
Bst6I CTCTTC 3 cut(s) 276, 486, 1162
BstAFI CTTAAG 1 cut(s) 901
BstAPI GCANNNNNTGC 1 cut(s) 897
BstAUI TGTACA 1 cut(s) 218
BstBI TTCGAA 3 cut(s) 125, 141, 1100
BstC8I GCNNGC 4 cut(s) 561, 565, 898, 1033
BstDEI CTNAG 5 cut(s) 296, 362, 432, 686, 881
BstF5I GGATG 3 cut(s) 676, 718, 1183
BstHHI GCGC 1 cut(s) 1110
BstKTI GATC 6 cut(s) 151, 316, 795, 850, 1090, 1153
BstMAI GTCTC 2 cut(s) 161, 311
BstMBI GATC 6 cut(s) 148, 313, 792, 847, 1087, 1150
BstMWI GCNNNNNNNGC 7 cut(s) 43, 222, 300, 523, 605, 897, 1037
BstNI CCWGG 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 225
BstSCI CCNGG 1 cut(s) 95
BstSFI CTRYAG 1 cut(s) 839
BstV1I GCAGC 4 cut(s) 40, 847, 866, 1015
BstXI CCANNNNNNTGG 2 cut(s) 103, 664
Bsu36I CCTNAGG 1 cut(s) 881
BtsCI GGATG 3 cut(s) 676, 718, 1183
BtsI GCAGTG 1 cut(s) 1153
BtsIMutI CAGTG 2 cut(s) 1083, 1153
BveI ACCTGC 1 cut(s) 517
Cac8I GCNNGC 4 cut(s) 561, 565, 898, 1033
CaiI CAGNNNCTG 2 cut(s) 324, 980
CciI TCATGA 1 cut(s) 625
CfoI GCGC 1 cut(s) 1110
Cfr13I GGNCC 2 cut(s) 700, 805
Csp6I GTAC 2 cut(s) 117, 219
CviAII CATG 7 cut(s) 222, 331, 403, 424, 626, 941, 1281
CviQI GTAC 2 cut(s) 117, 219
DdeI CTNAG 5 cut(s) 296, 362, 432, 686, 881
DpnI GATC 6 cut(s) 150, 315, 794, 849, 1089, 1152
DpnII GATC 6 cut(s) 148, 313, 792, 847, 1087, 1150
Eam1104I CTCTTC 3 cut(s) 276, 486, 1162
EarI CTCTTC 3 cut(s) 276, 486, 1162
Ecl136II GAGCTC 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 11
Eco47I GGWCC 2 cut(s) 700, 805
Eco53kI GAGCTC 1 cut(s) 9
Eco57I CTGAAG 2 cut(s) 503, 1002
Eco81I CCTNAGG 1 cut(s) 881
EcoICRI GAGCTC 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 162
EcoT38I GRGCYC 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 162
Esp3I CGTCTC 1 cut(s) 311
FaeI CATG 7 cut(s) 225, 334, 406, 427, 629, 944, 1284
FalI AAGNNNNNCTT 2 cut(s) 1252, 1284
FatI CATG 7 cut(s) 221, 330, 402, 423, 625, 940, 1280
FauNDI CATATG 1 cut(s) 864
FbaI TGATCA 3 cut(s) 148, 1087, 1150
Fnu4HI GCNGC 4 cut(s) 54, 836, 855, 1029
FokI GGATG 3 cut(s) 683, 725, 1190
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 4 cut(s) 54, 836, 855, 1029
FspBI CTAG 3 cut(s) 186, 635, 1275
GlaI GCGC 1 cut(s) 1109
GluI GCNGC 4 cut(s) 54, 836, 855, 1029
GsuI CTGGAG 1 cut(s) 269
HhaI GCGC 1 cut(s) 1110
Hin1II CATG 7 cut(s) 225, 334, 406, 427, 629, 944, 1284
Hin6I GCGC 1 cut(s) 1108
HinP1I GCGC 1 cut(s) 1108
HindIII AAGCTT 1 cut(s) 590
HinfI GANTC 6 cut(s) 58, 100, 131, 182, 344, 977
Hpy166II GTNNAC 1 cut(s) 1141
Hpy188I TCNGA 8 cut(s) 505, 522, 775, 823, 982, 1045, 1155, 1234
Hpy188III TCNNGA 6 cut(s) 179, 186, 248, 308, 575, 626
Hpy8I GTNNAC 1 cut(s) 1141
HpyAV CCTTC 5 cut(s) 466, 776, 838, 1116, 1150
HpyCH4III ACNGT 2 cut(s) 326, 652
HpyCH4IV ACGT 1 cut(s) 371
HpyCH4V TGCA 7 cut(s) 225, 559, 709, 854, 929, 1241, 1280
HpyF10VI GCNNNNNNNGC 7 cut(s) 43, 222, 300, 523, 605, 897, 1037
HpyF3I CTNAG 5 cut(s) 296, 362, 432, 686, 881
HpySE526I ACGT 1 cut(s) 371
Hsp92II CATG 7 cut(s) 225, 334, 406, 427, 629, 944, 1284
HspAI GCGC 1 cut(s) 1108
Ksp22I TGATCA 3 cut(s) 148, 1087, 1150
Kzo9I GATC 6 cut(s) 148, 313, 792, 847, 1087, 1150
LmnI GCTCC 6 cut(s) 164, 358, 481, 682, 888, 1045
Lsp1109I GCAGC 4 cut(s) 40, 847, 866, 1015
LweI GCATC 2 cut(s) 525, 1228
MaeI CTAG 3 cut(s) 186, 635, 1275
MaeII ACGT 1 cut(s) 371
MaeIII GTNAC 1 cut(s) 326
MalI GATC 6 cut(s) 150, 315, 794, 849, 1089, 1152
MboI GATC 6 cut(s) 148, 313, 792, 847, 1087, 1150
MboII GAAGA 9 cut(s) 251, 290, 293, 323, 503, 931, 967, 1179, 1208
MfeI CAATTG 2 cut(s) 512, 704
MhlI GDGCHC 1 cut(s) 11
MlyI GAGTC 2 cut(s) 140, 191
MseI TTAA 7 cut(s) 48, 204, 255, 531, 876, 902, 1128
MslI CAYNNNNRTG 1 cut(s) 945
MspCI CTTAAG 1 cut(s) 901
MspR9I CCNGG 1 cut(s) 97
MunI CAATTG 2 cut(s) 512, 704
Mva1269I GAATGC 1 cut(s) 1222
MvaI CCWGG 1 cut(s) 97
MwoI GCNNNNNNNGC 7 cut(s) 43, 222, 300, 523, 605, 897, 1037
NdeI CATATG 1 cut(s) 864
NdeII GATC 6 cut(s) 148, 313, 792, 847, 1087, 1150
NlaIII CATG 7 cut(s) 225, 334, 406, 427, 629, 944, 1284
NmeAIII GCCGAG 2 cut(s) 793, 883
NmuCI GTSAC 1 cut(s) 326
NspI RCATGY 1 cut(s) 225
NspV TTCGAA 3 cut(s) 125, 141, 1100
PagI TCATGA 1 cut(s) 625
PctI GAATGC 1 cut(s) 1222
PfeI GAWTC 4 cut(s) 58, 100, 344, 977
PkrI GCNGC 4 cut(s) 55, 837, 856, 1030
PleI GAGTC 2 cut(s) 139, 190
PpsI GAGTC 2 cut(s) 139, 190
PshBI ATTAAT 1 cut(s) 255
PsiI TTATAA 1 cut(s) 264
Psp124BI GAGCTC 1 cut(s) 11
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PspPI GGNCC 2 cut(s) 700, 805
PstNI CAGNNNCTG 2 cut(s) 324, 980
RsaI GTAC 2 cut(s) 118, 220
RsaNI GTAC 2 cut(s) 117, 219
RseI CAYNNNNRTG 1 cut(s) 945
SacI GAGCTC 1 cut(s) 11
SaqAI TTAA 7 cut(s) 48, 204, 255, 531, 876, 902, 1128
SatI GCNGC 4 cut(s) 54, 836, 855, 1029
Sau3AI GATC 6 cut(s) 148, 313, 792, 847, 1087, 1150
Sau96I GGNCC 2 cut(s) 700, 805
ScaI AGTACT 1 cut(s) 118
SchI GAGTC 2 cut(s) 140, 191
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 1 cut(s) 11
SfaNI GCATC 2 cut(s) 525, 1228
SfcI CTRYAG 1 cut(s) 839
SfuI TTCGAA 3 cut(s) 125, 141, 1100
SinI GGWCC 2 cut(s) 700, 805
SmiMI CAYNNNNRTG 1 cut(s) 945
SmlI CTYRAG 5 cut(s) 177, 446, 740, 901, 1013
SmoI CTYRAG 5 cut(s) 177, 446, 740, 901, 1013
SsiI CCGC 1 cut(s) 808
SspI AATATT 1 cut(s) 467
SspMI CTAG 3 cut(s) 186, 635, 1275
SstI GAGCTC 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 2 cut(s) 326, 652
TaiI ACGT 1 cut(s) 374
TaqI TCGA 5 cut(s) 125, 141, 309, 574, 1100
TatI WGTACW 2 cut(s) 116, 218
TfiI GAWTC 4 cut(s) 58, 100, 344, 977
Tru1I TTAA 7 cut(s) 48, 204, 255, 531, 876, 902, 1128
Tru9I TTAA 7 cut(s) 48, 204, 255, 531, 876, 902, 1128
TscAI CASTG 2 cut(s) 1090, 1153
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 4 cut(s) 53, 835, 854, 1028
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 8 cut(s) 76, 347, 391, 412, 614, 645, 687, 932
TspRI CASTG 2 cut(s) 1090, 1153
Vha464I CTTAAG 1 cut(s) 901
VpaK11BI GGWCC 2 cut(s) 700, 805
VspI ATTAAT 1 cut(s) 255
XapI RAATTY 1 cut(s) 754
XbaI TCTAGA 1 cut(s) 185
XceI RCATGY 1 cut(s) 225
XspI CTAG 3 cut(s) 186, 635, 1275
ZrmI AGTACT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.