Rh3DG182000

Protein CHUP1, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0014566
Physical Location & Seq
Forward (+)
16156125 .. 16158092
1968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG182000.1

Sequence Viewer

Length: 1320 bp
ATGGAGAGCTCAACATCAAAGGTAGAGATGTTGAAGCCAGTCCTGCTTAAAGCTGCGATTCCTTTAGCTTTGTCTGTGGCTGGTTTCATCTTTGCCAGGATTCTGGCTCAAAGAAGTACTCATTCGAAAGAGTCTTTATTCGAAAGTGATCAGGTAAGCTCCTTGGAGACTAATTCTCAAGAGTCTAGAGATGAGGATAACTTTAATAGCTTTAGCTGTACATGCACACTTTCTATGGAAGAAAGTCTGGAGATTAATGATTATAAACCCAAATTGGAAGAAGAGATTTCACGCCTAAGAAGCCGTCTCGAAGATCTTCAAAAGAGAGAATCTGAGTTGGAGATGGAGTTTATCAGCTACTGTGACATGAAAGAGAGAGAATCAGCACTTATGGAGCTAAGGAACACGTTGTTATTGGAGATGGCTCGTGTTGAGTTCATGGATAGAGAGGTTTCGTTCATGGAGGCTGAGAGCCACAGGCTTGAGGAGTTGGTAGGAGAATATTTGAAGGTTTTGGAGCAATTTGAAGAGTGGAAATCAGAAAATCAATTGCTTCAGAGGCAGGTTAAGATGCTTATGACACAAGCAAGTGTGCAAGCAAGCACAATTCGAGAACAGGATTTGAAGCTTGAAGCCAGAGAAGCAGAAGTTGGGAGGGTTCATGATGAACTAGAAACAAGGAAAACAGTCGCCAAGACATTGGAGGATGAAATTGGGGAGCTAAGAATGATTTTGGACCAATTGCAGGATGAGAAAAAGGGGCTTTTGGAAAAACTTGAGTTGAAAGAAAATTCAGCTTCCTCAATCTCCGAGATTGAAGGAGAAAGGATCAAAATTGAGGACCGCACTCGGCTTTCAGAGGAATTAGAGCAGCTACAGAAGGATCGTGCAGCCGAGCATATGGAACTGATTAACCTGAGGTGGAGCAATGCTTGCTTAAGGCACGAGTTGATGAAGAACAATGCACAACAAGAACATGGTAATGAGCAGAAGAATAGTCATTTGGAAACAGATTCTGAAGTAAGCATAGAGATTGGAAATTATGGGCTTGAGCAAGAATTAGCTGCCGGCACGGCTTCGGAGCAAAATGTCAATGAGCCTTGCTTGGGAAATGTAAGCACTGATCAGGCTCGTTCGAAAAGGCGCAAGTTATTTGGAAGGCTTAAAAGATGGGTGGACGGCAGTGATCAGAAGGGAAGAGGAAGAGTAATGGATGAGAAAGAAAGGCGTGAAGAAGCAGTCAAGTGTTTTGGGAGGCATTCTGTTTCAGATGATGCAGAGGAACATCATCATACAAGGAGGTCTTGCTCTAGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

439

Amino Acids

50.76

Weight (kDa)

4.99

Isoelectric Point (pI)

55.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014566)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36650
fragaria_vesca FvH4_6g17340
malus_domestica MD12G1101400.v1.1
prunus_persica Prupe.7G122100_v2.0.a1
pyrus_communis pycom12g10010 pycom14g09380
rosa_chinensis RchiOBHm_Chr3g0471481
rosa_laevigata RLG00000024174
rosa_multiflora Rmu_sc0006582.1_g000006 Rmu_sc0030679.1_g000001
rosa_roxburghii Rroxscaffold_6G00409910
rosa_rugosa Rorug03G0118000
rosa_samantha Rh3AG168000 Rh3BG193500 Rh3CG184000 Rh3DG182000
rosa_wichuraiana Rw3G015830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 264
Acc36I ACCTGC 1 cut(s) 553
AciI CCGC 1 cut(s) 844
AclWI GGATC 2 cut(s) 836, 891
AcsI RAATTY 1 cut(s) 790
AcuI CTGAAG 2 cut(s) 539, 1038
AfaI GTAC 2 cut(s) 118, 220
AfiI CCNNNNNNNGG 2 cut(s) 745, 1106
AflII CTTAAG 1 cut(s) 937
AflIII ACRYGT 1 cut(s) 405
AgsI TTSAA 8 cut(s) 34, 320, 508, 527, 625, 632, 784, 818
AjnI CCWGG 1 cut(s) 95
AjuI GAANNNNNNNTTGG 4 cut(s) 633, 665, 986, 1018
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 2 cut(s) 161, 311
AlwI GGATC 2 cut(s) 836, 891
AlwNI CAGNNNCTG 2 cut(s) 360, 1016
ApeKI GCWGC 4 cut(s) 53, 871, 890, 1064
ApoI RAATTY 1 cut(s) 790
AseI ATTAAT 1 cut(s) 255
Asp700I GAANNNNTTC 1 cut(s) 315
AspLEI GCGC 1 cut(s) 1146
AspS9I GGNCC 2 cut(s) 736, 841
AsuII TTCGAA 3 cut(s) 125, 141, 1136
AvaII GGWCC 2 cut(s) 736, 841
AxyI CCTNAGG 1 cut(s) 917
BanII GRGCYC 1 cut(s) 11
BauI CACGAG 2 cut(s) 426, 944
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 4 cut(s) 40, 883, 902, 1051
BccI CCATC 3 cut(s) 337, 415, 1164
BceAI ACGGC 3 cut(s) 288, 1089, 1195
BciT130I CCWGG 1 cut(s) 97
BclI TGATCA 3 cut(s) 148, 1123, 1186
BcoDI GTCTC 2 cut(s) 161, 311
BfaI CTAG 3 cut(s) 186, 671, 1311
BfmI CTRYAG 1 cut(s) 875
BfrI CTTAAG 1 cut(s) 937
BfuAI ACCTGC 1 cut(s) 553
BglI GCCNNNNNGGC 1 cut(s) 1073
BglII AGATCT 1 cut(s) 313
BisI GCNGC 4 cut(s) 54, 872, 891, 1065
BlsI GCNGC 4 cut(s) 55, 873, 892, 1066
BmcAI AGTACT 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 2 cut(s) 736, 841
BmgT120I GGNCC 2 cut(s) 736, 841
BmrFI CCNGG 1 cut(s) 97
BmsI GCATC 2 cut(s) 561, 1264
BpmI CTGGAG 1 cut(s) 269
Bpu10I CCTNAGC 1 cut(s) 398
Bpu14I TTCGAA 3 cut(s) 125, 141, 1136
BpuEI CTTGAG 4 cut(s) 162, 503, 797, 1070
BsaJI CCNNGG 1 cut(s) 162
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bsc4I CCNNNNNNNGG 2 cut(s) 745, 1106
Bse118I RCCGGY 1 cut(s) 1067
Bse1I ACTGG 1 cut(s) 38
Bse21I CCTNAGG 1 cut(s) 917
Bse3DI GCAATG 1 cut(s) 934
BseBI CCWGG 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 3 cut(s) 712, 754, 1219
BseLI CCNNNNNNNGG 2 cut(s) 745, 1106
BseMI GCAATG 1 cut(s) 934
BseMII CTCAG 3 cut(s) 324, 459, 908
BseNI ACTGG 1 cut(s) 38
BseRI GAGGAG 1 cut(s) 500
BseXI GCAGC 4 cut(s) 40, 883, 902, 1051
BsgI GTGCAG 1 cut(s) 909
BsiHKAI GWGCWC 1 cut(s) 11
BsiSI CCGG 1 cut(s) 1068
BslI CCNNNNNNNGG 2 cut(s) 745, 1106
BsmAI GTCTC 2 cut(s) 161, 311
BsmBI CGTCTC 1 cut(s) 311
BsmI GAATGC 1 cut(s) 1258
Bsp119I TTCGAA 3 cut(s) 125, 141, 1136
Bsp1286I GDGCHC 1 cut(s) 11
Bsp1407I TGTACA 1 cut(s) 218
Bsp143I GATC 6 cut(s) 148, 313, 828, 883, 1123, 1186
BspACI CCGC 1 cut(s) 844
BspCNI CTCAG 3 cut(s) 325, 460, 909
BspHI TCATGA 1 cut(s) 661
BspMI ACCTGC 1 cut(s) 553
BspPI GGATC 2 cut(s) 836, 891
BspT104I TTCGAA 3 cut(s) 125, 141, 1136
BspTI CTTAAG 1 cut(s) 937
BsrDI GCAATG 1 cut(s) 934
BsrFI RCCGGY 1 cut(s) 1067
BsrGI TGTACA 1 cut(s) 218
BsrI ACTGG 1 cut(s) 38
BssAI RCCGGY 1 cut(s) 1067
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 6 cut(s) 148, 313, 828, 883, 1123, 1186
BssSI CACGAG 2 cut(s) 426, 944
BssT1I CCWWGG 1 cut(s) 162
Bst2BI CACGAG 2 cut(s) 426, 944
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 2 cut(s) 362, 688
Bst6I CTCTTC 4 cut(s) 276, 522, 1192, 1198
BstAFI CTTAAG 1 cut(s) 937
BstAPI GCANNNNNTGC 1 cut(s) 933
BstAUI TGTACA 1 cut(s) 218
BstBI TTCGAA 3 cut(s) 125, 141, 1136
BstC8I GCNNGC 4 cut(s) 597, 601, 934, 1069
BstDEI CTNAG 6 cut(s) 296, 333, 398, 468, 722, 917
BstF5I GGATG 3 cut(s) 712, 754, 1219
BstHHI GCGC 1 cut(s) 1146
BstKTI GATC 6 cut(s) 151, 316, 831, 886, 1126, 1189
BstMAI GTCTC 2 cut(s) 161, 311
BstMBI GATC 6 cut(s) 148, 313, 828, 883, 1123, 1186
BstMWI GCNNNNNNNGC 7 cut(s) 43, 222, 300, 559, 641, 933, 1073
BstNI CCWGG 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 225
BstSCI CCNGG 1 cut(s) 95
BstSFI CTRYAG 1 cut(s) 875
BstV1I GCAGC 4 cut(s) 40, 883, 902, 1051
BstX2I RGATCY 1 cut(s) 313
BstXI CCANNNNNNTGG 2 cut(s) 103, 700
BstYI RGATCY 1 cut(s) 313
Bsu36I CCTNAGG 1 cut(s) 917
BtsCI GGATG 3 cut(s) 712, 754, 1219
BtsI GCAGTG 1 cut(s) 1189
BtsIMutI CAGTG 2 cut(s) 1119, 1189
BveI ACCTGC 1 cut(s) 553
Cac8I GCNNGC 4 cut(s) 597, 601, 934, 1069
CaiI CAGNNNCTG 2 cut(s) 360, 1016
CciI TCATGA 1 cut(s) 661
CfoI GCGC 1 cut(s) 1146
Cfr10I RCCGGY 1 cut(s) 1067
Cfr13I GGNCC 2 cut(s) 736, 841
Csp6I GTAC 2 cut(s) 117, 219
CviAII CATG 7 cut(s) 222, 367, 439, 460, 662, 977, 1317
CviQI GTAC 2 cut(s) 117, 219
DdeI CTNAG 6 cut(s) 296, 333, 398, 468, 722, 917
DpnI GATC 6 cut(s) 150, 315, 830, 885, 1125, 1188
DpnII GATC 6 cut(s) 148, 313, 828, 883, 1123, 1186
Eam1104I CTCTTC 4 cut(s) 276, 522, 1192, 1198
EarI CTCTTC 4 cut(s) 276, 522, 1192, 1198
Ecl136II GAGCTC 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 11
Eco47I GGWCC 2 cut(s) 736, 841
Eco53kI GAGCTC 1 cut(s) 9
Eco57I CTGAAG 2 cut(s) 539, 1038
Eco81I CCTNAGG 1 cut(s) 917
EcoICRI GAGCTC 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 162
EcoT38I GRGCYC 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 162
Esp3I CGTCTC 1 cut(s) 311
FaeI CATG 7 cut(s) 225, 370, 442, 463, 665, 980, 1320
FalI AAGNNNNNCTT 2 cut(s) 1288, 1320
FatI CATG 7 cut(s) 221, 366, 438, 459, 661, 976, 1316
FauNDI CATATG 1 cut(s) 900
FbaI TGATCA 3 cut(s) 148, 1123, 1186
Fnu4HI GCNGC 4 cut(s) 54, 872, 891, 1065
FokI GGATG 3 cut(s) 719, 761, 1226
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 4 cut(s) 54, 872, 891, 1065
FspBI CTAG 3 cut(s) 186, 671, 1311
GlaI GCGC 1 cut(s) 1145
GluI GCNGC 4 cut(s) 54, 872, 891, 1065
GsuI CTGGAG 1 cut(s) 269
HapII CCGG 1 cut(s) 1068
HhaI GCGC 1 cut(s) 1146
Hin1II CATG 7 cut(s) 225, 370, 442, 463, 665, 980, 1320
Hin6I GCGC 1 cut(s) 1144
HinP1I GCGC 1 cut(s) 1144
HindIII AAGCTT 1 cut(s) 626
HinfI GANTC 7 cut(s) 58, 100, 131, 182, 329, 380, 1013
HpaII CCGG 1 cut(s) 1068
Hpy166II GTNNAC 1 cut(s) 1177
Hpy188I TCNGA 9 cut(s) 334, 541, 558, 811, 859, 1018, 1081, 1191, 1270
Hpy188III TCNNGA 6 cut(s) 179, 186, 248, 308, 611, 662
Hpy8I GTNNAC 1 cut(s) 1177
HpyAV CCTTC 5 cut(s) 502, 812, 874, 1152, 1186
HpyCH4III ACNGT 2 cut(s) 362, 688
HpyCH4IV ACGT 1 cut(s) 407
HpyCH4V TGCA 7 cut(s) 225, 595, 745, 890, 965, 1277, 1316
HpyF10VI GCNNNNNNNGC 7 cut(s) 43, 222, 300, 559, 641, 933, 1073
HpyF3I CTNAG 6 cut(s) 296, 333, 398, 468, 722, 917
HpySE526I ACGT 1 cut(s) 407
Hsp92II CATG 7 cut(s) 225, 370, 442, 463, 665, 980, 1320
HspAI GCGC 1 cut(s) 1144
KroI GCCGGC 1 cut(s) 1067
KroNI GCCGGC 1 cut(s) 1069
Ksp22I TGATCA 3 cut(s) 148, 1123, 1186
Kzo9I GATC 6 cut(s) 148, 313, 828, 883, 1123, 1186
LmnI GCTCC 6 cut(s) 164, 394, 517, 718, 924, 1081
Lsp1109I GCAGC 4 cut(s) 40, 883, 902, 1051
LweI GCATC 2 cut(s) 561, 1264
MaeI CTAG 3 cut(s) 186, 671, 1311
MaeII ACGT 1 cut(s) 407
MaeIII GTNAC 1 cut(s) 362
MalI GATC 6 cut(s) 150, 315, 830, 885, 1125, 1188
MboI GATC 6 cut(s) 148, 313, 828, 883, 1123, 1186
MfeI CAATTG 2 cut(s) 548, 740
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 1 cut(s) 11
MlyI GAGTC 2 cut(s) 140, 191
MmeI TCCRAC 1 cut(s) 318
MroNI GCCGGC 1 cut(s) 1067
MroXI GAANNNNTTC 1 cut(s) 315
MseI TTAA 7 cut(s) 48, 204, 255, 567, 912, 938, 1164
MslI CAYNNNNRTG 1 cut(s) 981
MspCI CTTAAG 1 cut(s) 937
MspI CCGG 1 cut(s) 1068
MspR9I CCNGG 1 cut(s) 97
MunI CAATTG 2 cut(s) 548, 740
Mva1269I GAATGC 1 cut(s) 1258
MvaI CCWGG 1 cut(s) 97
MwoI GCNNNNNNNGC 7 cut(s) 43, 222, 300, 559, 641, 933, 1073
NaeI GCCGGC 1 cut(s) 1069
NdeI CATATG 1 cut(s) 900
NdeII GATC 6 cut(s) 148, 313, 828, 883, 1123, 1186
NgoMIV GCCGGC 1 cut(s) 1067
NlaIII CATG 7 cut(s) 225, 370, 442, 463, 665, 980, 1320
NmeAIII GCCGAG 2 cut(s) 829, 919
NmuCI GTSAC 1 cut(s) 362
NspI RCATGY 1 cut(s) 225
NspV TTCGAA 3 cut(s) 125, 141, 1136
PagI TCATGA 1 cut(s) 661
PctI GAATGC 1 cut(s) 1258
PdiI GCCGGC 1 cut(s) 1069
PdmI GAANNNNTTC 1 cut(s) 315
PfeI GAWTC 5 cut(s) 58, 100, 329, 380, 1013
PkrI GCNGC 4 cut(s) 55, 873, 892, 1066
PleI GAGTC 2 cut(s) 139, 190
PpsI GAGTC 2 cut(s) 139, 190
PshBI ATTAAT 1 cut(s) 255
PsiI TTATAA 1 cut(s) 264
Psp124BI GAGCTC 1 cut(s) 11
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PspPI GGNCC 2 cut(s) 736, 841
PstNI CAGNNNCTG 2 cut(s) 360, 1016
PsuI RGATCY 1 cut(s) 313
RsaI GTAC 2 cut(s) 118, 220
RsaNI GTAC 2 cut(s) 117, 219
RseI CAYNNNNRTG 1 cut(s) 981
SacI GAGCTC 1 cut(s) 11
SaqAI TTAA 7 cut(s) 48, 204, 255, 567, 912, 938, 1164
SatI GCNGC 4 cut(s) 54, 872, 891, 1065
Sau3AI GATC 6 cut(s) 148, 313, 828, 883, 1123, 1186
Sau96I GGNCC 2 cut(s) 736, 841
ScaI AGTACT 1 cut(s) 118
SchI GAGTC 2 cut(s) 140, 191
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 1 cut(s) 11
SfaNI GCATC 2 cut(s) 561, 1264
SfcI CTRYAG 1 cut(s) 875
SfuI TTCGAA 3 cut(s) 125, 141, 1136
SinI GGWCC 2 cut(s) 736, 841
SmiMI CAYNNNNRTG 1 cut(s) 981
SmlI CTYRAG 5 cut(s) 177, 482, 776, 937, 1049
SmoI CTYRAG 5 cut(s) 177, 482, 776, 937, 1049
SsiI CCGC 1 cut(s) 844
SspI AATATT 1 cut(s) 503
SspMI CTAG 3 cut(s) 186, 671, 1311
SstI GAGCTC 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 2 cut(s) 362, 688
TaiI ACGT 1 cut(s) 410
TaqI TCGA 5 cut(s) 125, 141, 309, 610, 1136
TatI WGTACW 2 cut(s) 116, 218
TfiI GAWTC 5 cut(s) 58, 100, 329, 380, 1013
Tru1I TTAA 7 cut(s) 48, 204, 255, 567, 912, 938, 1164
Tru9I TTAA 7 cut(s) 48, 204, 255, 567, 912, 938, 1164
TscAI CASTG 2 cut(s) 1126, 1189
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 4 cut(s) 53, 871, 890, 1064
Tsp45I GTSAC 1 cut(s) 362
TspDTI ATGAA 8 cut(s) 76, 383, 427, 448, 650, 681, 723, 968
TspRI CASTG 2 cut(s) 1126, 1189
Vha464I CTTAAG 1 cut(s) 937
VpaK11BI GGWCC 2 cut(s) 736, 841
VspI ATTAAT 1 cut(s) 255
XapI RAATTY 1 cut(s) 790
XbaI TCTAGA 1 cut(s) 185
XceI RCATGY 1 cut(s) 225
XmnI GAANNNNTTC 1 cut(s) 315
XspI CTAG 3 cut(s) 186, 671, 1311
ZrmI AGTACT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.