Rmu_sc0030679.1_g000001

Protein CHUP1, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030679.1
OG0014566
Physical Location & Seq
Reverse (-)
2 .. 500
499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030679.1_g000001.1.cds

Sequence Viewer

Length: 499 bp
atgttgaagccagtcctgcttaaagctgggattcctttagctttgtctgtggctggtttcatctatgccaggattctggctcaaagaagtactcattcgaaagagtctttattcgaaagtgatcaggtaagctccttggagactaattctcaagagtctagagatgaggataactttcatagctttagctgtacatgcacactttctatggaagaaagtctggagattaatgattataaacccaaagtggaagaagagatttcacgcctaagaagccgtctcgaagatcttcaaaagagagaatctgagttggagatggagtttatcagctactgtgacatgaaagagagagaatcagcactaatggagctaaggaacacgttgttattggagatggctcgtgttgagttcatggatagagaggtttcgttcatggaggctgagagccacaggcttgaggagttggtaggagaatatttgaaggttttggagcaatttg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

19.39

Weight (kDa)

4.66

Isoelectric Point (pI)

54.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014566)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36650
fragaria_vesca FvH4_6g17340
malus_domestica MD12G1101400.v1.1
prunus_persica Prupe.7G122100_v2.0.a1
pyrus_communis pycom12g10010 pycom14g09380
rosa_chinensis RchiOBHm_Chr3g0471481
rosa_laevigata RLG00000024174
rosa_multiflora Rmu_sc0006582.1_g000006 Rmu_sc0030679.1_g000001
rosa_roxburghii Rroxscaffold_6G00409910
rosa_rugosa Rorug03G0118000
rosa_samantha Rh3AG168000 Rh3BG193500 Rh3CG184000 Rh3DG182000
rosa_wichuraiana Rw3G015830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 237
AfaI GTAC 2 cut(s) 91, 193
AflIII ACRYGT 1 cut(s) 378
AgsI TTSAA 3 cut(s) 7, 293, 481
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 7 cut(s) 26, 41, 132, 183, 189, 330, 370
AluI AGCT 7 cut(s) 26, 41, 132, 183, 189, 330, 370
Alw26I GTCTC 2 cut(s) 134, 284
AlwNI CAGNNNCTG 1 cut(s) 333
AseI ATTAAT 1 cut(s) 228
Asp700I GAANNNNTTC 1 cut(s) 288
AsuII TTCGAA 2 cut(s) 98, 114
BauI CACGAG 1 cut(s) 399
BccI CCATC 2 cut(s) 310, 388
BceAI ACGGC 1 cut(s) 261
BciT130I CCWGG 1 cut(s) 70
BclI TGATCA 1 cut(s) 121
BcoDI GTCTC 2 cut(s) 134, 284
BfaI CTAG 1 cut(s) 159
BglII AGATCT 1 cut(s) 286
BmcAI AGTACT 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 242
Bpu10I CCTNAGC 1 cut(s) 371
Bpu14I TTCGAA 2 cut(s) 98, 114
BpuEI CTTGAG 2 cut(s) 135, 476
BsaJI CCNNGG 1 cut(s) 135
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bse1I ACTGG 1 cut(s) 11
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 135
BseMII CTCAG 2 cut(s) 297, 432
BseNI ACTGG 1 cut(s) 11
BseRI GAGGAG 1 cut(s) 473
BseYI CCCAGC 1 cut(s) 26
BsmAI GTCTC 2 cut(s) 134, 284
BsmBI CGTCTC 1 cut(s) 284
Bsp119I TTCGAA 2 cut(s) 98, 114
Bsp1407I TGTACA 1 cut(s) 191
Bsp143I GATC 2 cut(s) 121, 286
BspCNI CTCAG 2 cut(s) 298, 433
BspT104I TTCGAA 2 cut(s) 98, 114
BsrGI TGTACA 1 cut(s) 191
BsrI ACTGG 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 2 cut(s) 121, 286
BssSI CACGAG 1 cut(s) 399
BssT1I CCWWGG 1 cut(s) 135
Bst2BI CACGAG 1 cut(s) 399
Bst2UI CCWGG 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 335
Bst6I CTCTTC 1 cut(s) 249
BstAUI TGTACA 1 cut(s) 191
BstBI TTCGAA 2 cut(s) 98, 114
BstDEI CTNAG 4 cut(s) 269, 306, 371, 441
BstKTI GATC 2 cut(s) 124, 289
BstMAI GTCTC 2 cut(s) 134, 284
BstMBI GATC 2 cut(s) 121, 286
BstMWI GCNNNNNNNGC 3 cut(s) 16, 195, 273
BstNI CCWGG 1 cut(s) 70
BstNSI RCATGY 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 286
BstXI CCANNNNNNTGG 1 cut(s) 76
BstYI RGATCY 1 cut(s) 286
CaiI CAGNNNCTG 1 cut(s) 333
Csp6I GTAC 2 cut(s) 90, 192
CviAII CATG 4 cut(s) 195, 340, 412, 433
CviQI GTAC 2 cut(s) 90, 192
DdeI CTNAG 4 cut(s) 269, 306, 371, 441
DpnI GATC 2 cut(s) 123, 288
DpnII GATC 2 cut(s) 121, 286
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 135
EcoRII CCWGG 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
Esp3I CGTCTC 1 cut(s) 284
FaeI CATG 4 cut(s) 198, 343, 415, 436
FaiI YATR 8 cut(s) 66, 180, 196, 209, 237, 341, 413, 434
FatI CATG 4 cut(s) 194, 339, 411, 432
FbaI TGATCA 1 cut(s) 121
FspBI CTAG 1 cut(s) 159
GsaI CCCAGC 1 cut(s) 30
GsuI CTGGAG 1 cut(s) 242
Hin1II CATG 4 cut(s) 198, 343, 415, 436
HinfI GANTC 6 cut(s) 31, 73, 104, 155, 302, 353
Hpy188I TCNGA 1 cut(s) 307
Hpy188III TCNNGA 4 cut(s) 152, 159, 221, 281
HpyAV CCTTC 1 cut(s) 475
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4IV ACGT 1 cut(s) 380
HpyCH4V TGCA 1 cut(s) 198
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 195, 273
HpyF3I CTNAG 4 cut(s) 269, 306, 371, 441
HpySE526I ACGT 1 cut(s) 380
Hsp92II CATG 4 cut(s) 198, 343, 415, 436
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 2 cut(s) 121, 286
LmnI GCTCC 3 cut(s) 137, 367, 490
MaeI CTAG 1 cut(s) 159
MaeII ACGT 1 cut(s) 380
MaeIII GTNAC 1 cut(s) 335
MalI GATC 2 cut(s) 123, 288
MboI GATC 2 cut(s) 121, 286
MboII GAAGA 5 cut(s) 224, 263, 266, 281, 296
MflI RGATCY 1 cut(s) 286
MluCI AATT 2 cut(s) 145, 494
MlyI GAGTC 2 cut(s) 113, 164
MmeI TCCRAC 1 cut(s) 291
MnlI CCTC 4 cut(s) 160, 415, 430, 451
MroXI GAANNNNTTC 1 cut(s) 288
MseI TTAA 2 cut(s) 21, 228
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 3 cut(s) 16, 195, 273
NdeII GATC 2 cut(s) 121, 286
NlaIII CATG 4 cut(s) 198, 343, 415, 436
NmuCI GTSAC 1 cut(s) 335
NspI RCATGY 1 cut(s) 198
NspV TTCGAA 2 cut(s) 98, 114
PdmI GAANNNNTTC 1 cut(s) 288
PfeI GAWTC 4 cut(s) 31, 73, 302, 353
PleI GAGTC 2 cut(s) 112, 163
PpsI GAGTC 2 cut(s) 112, 163
PshBI ATTAAT 1 cut(s) 228
PsiI TTATAA 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 68
PspFI CCCAGC 1 cut(s) 26
PspGI CCWGG 1 cut(s) 68
PstNI CAGNNNCTG 1 cut(s) 333
PsuI RGATCY 1 cut(s) 286
RsaI GTAC 2 cut(s) 91, 193
RsaNI GTAC 2 cut(s) 90, 192
SaqAI TTAA 2 cut(s) 21, 228
Sau3AI GATC 2 cut(s) 121, 286
ScaI AGTACT 1 cut(s) 91
SchI GAGTC 2 cut(s) 113, 164
ScrFI CCNGG 1 cut(s) 70
SfuI TTCGAA 2 cut(s) 98, 114
SmlI CTYRAG 2 cut(s) 150, 455
SmoI CTYRAG 2 cut(s) 150, 455
Sse9I AATT 2 cut(s) 145, 494
SspI AATATT 1 cut(s) 476
SspMI CTAG 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 68
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 1 cut(s) 335
TaiI ACGT 1 cut(s) 383
TaqI TCGA 3 cut(s) 98, 114, 282
TasI AATT 2 cut(s) 145, 494
TatI WGTACW 2 cut(s) 89, 191
TfiI GAWTC 4 cut(s) 31, 73, 302, 353
Tru1I TTAA 2 cut(s) 21, 228
Tru9I TTAA 2 cut(s) 21, 228
TseFI GTSAC 1 cut(s) 335
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 5 cut(s) 49, 167, 356, 400, 421
VspI ATTAAT 1 cut(s) 228
XbaI TCTAGA 1 cut(s) 158
XceI RCATGY 1 cut(s) 198
XmnI GAANNNNTTC 1 cut(s) 288
XspI CTAG 1 cut(s) 159
ZrmI AGTACT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.