FvH4_6g17340

Protein CHUP1, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014566
Physical Location & Seq
Reverse (-)
11263394 .. 11265302
1909 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g17340.t1

Sequence Viewer

Length: 1320 bp
ATGGAGAGCTCAACATCAAAGGTAGAGATGTTTAAGCCAGTGCTGCTTAAAGCTGGGATTCCTTTAGCTTTGTCTGTGGCTGGTTTCATCTATGCCAGGATTATGGCTCAAAGAAGTACTCATTCGAAAGAGTCTTTATTCGAAAAGGATAAGGTAAGCTCCTTGGAGAATTCTCAAGACTCTAGAGATAAGGATAGCTTTCAAAGTTTAAGCTGTACATGCTTACTTTCTGTGGAAGAAAGTCTGAAGATTTATGATTATAAACTCCAATTGGAAGAAGATATTTCACGCTTAAGATGTCGTCTTGAAGATCTTCAAAGGAGAGAATCTGAGTTGGGGATGGAGTTTATCAGCTACTGTGACATGAAAGAGAAAGAATCAGCTCTTATGGAGCTAAGGAACATGTTGTTATTGGAGATGACTCGTGTTGAGTTCATGGATAGAGAGGTTTCGTTCATGGAGGCTGAGAGCCAAAGGCTTGAGGAGTTGGTGAGAGAATATTTGAAGGTTTTGGAGCAACTAGAAGATTGGAAATCAGAAAATGAATTGCTTCAGAGGCAGGTTAAGATGCTTATGACACAAGCAAGTGTGCAATCACGCATAATTCGAGAGCAGGATTTGAAGCTTGACGCCAGAGAAGCAGAACTTATGAGAATCCATGATGAACTAGAAACAAGGACAGAAGTTACTAAGAGATTGGAGGATGAAATTGGGGAGCTGAGAATGGCTTTGGACCAGTTGCAGGATGAGAAAAATGGGCTCTGGGAAAATCTTGAGTTGAAAGAAAACTCACCTTCCTCAATCTCCAAGATTGAAGGAGAAAGGATCAAAATTGAGGACTACACTCAACTTTCAGAGGAATTAGAGCAGCTGCAGAAGGATCGTGCAGCCAACCATACGGAGCTGATTTACCTGCGGTGGAGCAATGCATGCTTAAGGCACGAGTTGATGAAGAACAATGCACAACAAGAACATGGTACTGAGCAGAAGAATAGTCATTTGGAAACAGATTCTGAAGGAAGCATAGAGATAGGGAATTATGGGCTAGAGCATGAATTAGCTTCTGGCAGTGGCATGGCTTTGGAGGACAATGTAAATGAGCCTTGCTTTGGAAATGTAAGTACAGATCAAGCTTGTTCGAAAAGGCGCAAACTTTTTAGACGGCTTAAAAGATGGGTCGAAGGCAATGATCAGAAGGGAAGAGGAAGATTGGAGGGGAAAGAAAGACATGAAGAAGCAGCCAAGTGTTTTGGGAGGCATTCTCTTTCAGATGATGCAGAGGAACATCATCATGCAAGGAGGTCTTGCTCTAGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

440

Amino Acids

51.09

Weight (kDa)

5.12

Isoelectric Point (pI)

59.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014566)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36650
fragaria_vesca FvH4_6g17340
malus_domestica MD12G1101400.v1.1
prunus_persica Prupe.7G122100_v2.0.a1
pyrus_communis pycom12g10010 pycom14g09380
rosa_chinensis RchiOBHm_Chr3g0471481
rosa_laevigata RLG00000024174
rosa_multiflora Rmu_sc0006582.1_g000006 Rmu_sc0030679.1_g000001
rosa_roxburghii Rroxscaffold_6G00409910
rosa_rugosa Rorug03G0118000
rosa_samantha Rh3AG168000 Rh3BG193500 Rh3CG184000 Rh3DG182000
rosa_wichuraiana Rw3G015830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 261
Acc36I ACCTGC 2 cut(s) 550, 921
AciI CCGC 1 cut(s) 916
AclWI GGATC 2 cut(s) 833, 888
AcsI RAATTY 1 cut(s) 169
AcuI CTGAAG 3 cut(s) 266, 536, 1035
AcyI GRCGYC 1 cut(s) 630
AfaI GTAC 4 cut(s) 118, 217, 979, 1123
AfiI CCNNNNNNNGG 2 cut(s) 742, 1109
AflII CTTAAG 2 cut(s) 292, 934
AflIII ACRYGT 1 cut(s) 402
AgsI TTSAA 7 cut(s) 203, 308, 317, 505, 622, 781, 815
AjnI CCWGG 1 cut(s) 95
AjuI GAANNNNNNNTTGG 2 cut(s) 983, 1015
Alw21I GWGCWC 1 cut(s) 11
AlwI GGATC 2 cut(s) 833, 888
AlwNI CAGNNNCTG 2 cut(s) 357, 1013
ApeKI GCWGC 5 cut(s) 43, 868, 871, 887, 1238
ApoI RAATTY 1 cut(s) 169
Asp700I GAANNNNTTC 2 cut(s) 312, 549
AspLEI GCGC 1 cut(s) 1149
AspS9I GGNCC 1 cut(s) 733
AsuHPI GGTGA 2 cut(s) 502, 783
AsuII TTCGAA 3 cut(s) 125, 141, 1139
AvaII GGWCC 1 cut(s) 733
BanII GRGCYC 2 cut(s) 11, 762
BauI CACGAG 2 cut(s) 423, 941
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 5 cut(s) 30, 858, 880, 899, 1250
BccI CCATC 2 cut(s) 334, 1167
BceAI ACGGC 1 cut(s) 1178
BcgI CGANNNNNNTGC 2 cut(s) 863, 897
BciT130I CCWGG 1 cut(s) 97
BclI TGATCA 1 cut(s) 1189
BfaI CTAG 5 cut(s) 183, 521, 668, 1046, 1311
BfmI CTRYAG 1 cut(s) 872
BfrI CTTAAG 2 cut(s) 292, 934
BfuAI ACCTGC 2 cut(s) 550, 921
BglII AGATCT 1 cut(s) 310
BisI GCNGC 5 cut(s) 44, 869, 872, 888, 1239
BlsI GCNGC 5 cut(s) 45, 870, 873, 889, 1240
BmcAI AGTACT 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 733
BmgT120I GGNCC 1 cut(s) 733
BmrFI CCNGG 1 cut(s) 97
BmsI GCATC 2 cut(s) 558, 1264
BplI GAGNNNNNCTC 2 cut(s) 1246, 1278
Bpu10I CCTNAGC 1 cut(s) 395
Bpu14I TTCGAA 3 cut(s) 125, 141, 1139
BpuEI CTTGAG 3 cut(s) 159, 500, 794
BsaHI GRCGYC 1 cut(s) 630
BsaJI CCNNGG 1 cut(s) 162
Bsc4I CCNNNNNNNGG 2 cut(s) 742, 1109
Bse1I ACTGG 2 cut(s) 38, 736
Bse3DI GCAATG 2 cut(s) 931, 1192
BseBI CCWGG 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 3 cut(s) 345, 709, 751
BseLI CCNNNNNNNGG 2 cut(s) 742, 1109
BseMI GCAATG 2 cut(s) 931, 1192
BseMII CTCAG 4 cut(s) 321, 456, 710, 972
BseNI ACTGG 2 cut(s) 38, 736
BseRI GAGGAG 1 cut(s) 497
BseXI GCAGC 5 cut(s) 30, 858, 880, 899, 1250
BseYI CCCAGC 1 cut(s) 53
BsgI GTGCAG 1 cut(s) 906
BsiHKAI GWGCWC 1 cut(s) 11
BslI CCNNNNNNNGG 2 cut(s) 742, 1109
BsmI GAATGC 1 cut(s) 1258
Bsp119I TTCGAA 3 cut(s) 125, 141, 1139
Bsp1286I GDGCHC 2 cut(s) 11, 762
Bsp1407I TGTACA 1 cut(s) 215
Bsp143I GATC 5 cut(s) 310, 825, 880, 1126, 1189
BspACI CCGC 1 cut(s) 916
BspCNI CTCAG 4 cut(s) 322, 457, 711, 973
BspMAI CTGCAG 1 cut(s) 876
BspMI ACCTGC 2 cut(s) 550, 921
BspPI GGATC 2 cut(s) 833, 888
BspT104I TTCGAA 3 cut(s) 125, 141, 1139
BspTI CTTAAG 2 cut(s) 292, 934
BsrDI GCAATG 2 cut(s) 931, 1192
BsrGI TGTACA 1 cut(s) 215
BsrI ACTGG 2 cut(s) 38, 736
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 5 cut(s) 310, 825, 880, 1126, 1189
BssNI GRCGYC 1 cut(s) 630
BssSI CACGAG 2 cut(s) 423, 941
BssT1I CCWWGG 1 cut(s) 162
Bst2BI CACGAG 2 cut(s) 423, 941
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 359
Bst6I CTCTTC 1 cut(s) 1195
BstACI GRCGYC 1 cut(s) 630
BstAFI CTTAAG 2 cut(s) 292, 934
BstAPI GCANNNNNTGC 1 cut(s) 930
BstAUI TGTACA 1 cut(s) 215
BstBI TTCGAA 3 cut(s) 125, 141, 1139
BstC8I GCNNGC 1 cut(s) 931
BstDEI CTNAG 6 cut(s) 330, 395, 465, 690, 719, 981
BstF5I GGATG 3 cut(s) 345, 709, 751
BstHHI GCGC 1 cut(s) 1149
BstKTI GATC 5 cut(s) 313, 828, 883, 1129, 1192
BstMBI GATC 5 cut(s) 310, 825, 880, 1126, 1189
BstMWI GCNNNNNNNGC 5 cut(s) 43, 219, 556, 638, 930
BstNI CCWGG 1 cut(s) 97
BstNSI RCATGY 3 cut(s) 222, 406, 933
BstSCI CCNGG 1 cut(s) 95
BstSFI CTRYAG 1 cut(s) 872
BstV1I GCAGC 5 cut(s) 30, 858, 880, 899, 1250
BstX2I RGATCY 1 cut(s) 310
BstXI CCANNNNNNTGG 1 cut(s) 103
BstYI RGATCY 1 cut(s) 310
BtsCI GGATG 3 cut(s) 345, 709, 751
BtsI GCAGTG 1 cut(s) 1075
BtsIMutI CAGTG 2 cut(s) 45, 1075
BveI ACCTGC 2 cut(s) 550, 921
Cac8I GCNNGC 1 cut(s) 931
CaiI CAGNNNCTG 2 cut(s) 357, 1013
CfoI GCGC 1 cut(s) 1149
Cfr13I GGNCC 1 cut(s) 733
CseI GACGC 1 cut(s) 638
Csp6I GTAC 4 cut(s) 117, 216, 978, 1122
CviQI GTAC 4 cut(s) 117, 216, 978, 1122
DdeI CTNAG 6 cut(s) 330, 395, 465, 690, 719, 981
DpnI GATC 5 cut(s) 312, 827, 882, 1128, 1191
DpnII GATC 5 cut(s) 310, 825, 880, 1126, 1189
Eam1104I CTCTTC 1 cut(s) 1195
EarI CTCTTC 1 cut(s) 1195
Ecl136II GAGCTC 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 162
Eco24I GRGCYC 2 cut(s) 11, 762
Eco47I GGWCC 1 cut(s) 733
Eco53kI GAGCTC 1 cut(s) 9
Eco57I CTGAAG 3 cut(s) 266, 536, 1035
EcoICRI GAGCTC 1 cut(s) 9
EcoRI GAATTC 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 162
EcoT22I ATGCAT 1 cut(s) 931
EcoT38I GRGCYC 2 cut(s) 11, 762
ErhI CCWWGG 1 cut(s) 162
FalI AAGNNNNNCTT 6 cut(s) 182, 214, 630, 662, 1288, 1320
FbaI TGATCA 1 cut(s) 1189
Fnu4HI GCNGC 5 cut(s) 44, 869, 872, 888, 1239
FokI GGATG 3 cut(s) 352, 716, 758
FriOI GRGCYC 2 cut(s) 11, 762
Fsp4HI GCNGC 5 cut(s) 44, 869, 872, 888, 1239
FspBI CTAG 5 cut(s) 183, 521, 668, 1046, 1311
GlaI GCGC 1 cut(s) 1148
GluI GCNGC 5 cut(s) 44, 869, 872, 888, 1239
GsaI CCCAGC 1 cut(s) 57
HgaI GACGC 1 cut(s) 638
HhaI GCGC 1 cut(s) 1149
Hin1I GRCGYC 1 cut(s) 630
Hin6I GCGC 1 cut(s) 1147
HinP1I GCGC 1 cut(s) 1147
HindIII AAGCTT 2 cut(s) 623, 1131
HinfI GANTC 8 cut(s) 58, 131, 179, 326, 377, 421, 654, 1010
HphI GGTGA 2 cut(s) 502, 783
Hpy188I TCNGA 8 cut(s) 246, 331, 538, 555, 856, 1015, 1194, 1270
Hpy188III TCNNGA 5 cut(s) 176, 183, 305, 608, 773
HpyAV CCTTC 7 cut(s) 499, 804, 809, 871, 1010, 1175, 1189
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4V TGCA 9 cut(s) 592, 742, 874, 887, 929, 962, 1277, 1295, 1316
HpyF10VI GCNNNNNNNGC 5 cut(s) 43, 219, 556, 638, 930
HpyF3I CTNAG 6 cut(s) 330, 395, 465, 690, 719, 981
Hsp92I GRCGYC 1 cut(s) 630
HspAI GCGC 1 cut(s) 1147
Ksp22I TGATCA 1 cut(s) 1189
Kzo9I GATC 5 cut(s) 310, 825, 880, 1126, 1189
LmnI GCTCC 6 cut(s) 164, 391, 514, 715, 901, 921
Lsp1109I GCAGC 5 cut(s) 30, 858, 880, 899, 1250
LweI GCATC 2 cut(s) 558, 1264
MaeI CTAG 5 cut(s) 183, 521, 668, 1046, 1311
MaeIII GTNAC 2 cut(s) 359, 685
MalI GATC 5 cut(s) 312, 827, 882, 1128, 1191
MboI GATC 5 cut(s) 310, 825, 880, 1126, 1189
MfeI CAATTG 1 cut(s) 269
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 2 cut(s) 11, 762
MluCI AATT 9 cut(s) 169, 269, 545, 603, 708, 831, 860, 1036, 1055
MlyI GAGTC 3 cut(s) 140, 173, 415
Mph1103I ATGCAT 1 cut(s) 931
MroXI GAANNNNTTC 2 cut(s) 312, 549
MseI TTAA 7 cut(s) 33, 48, 209, 293, 564, 935, 1167
MslI CAYNNNNRTG 1 cut(s) 1290
MspA1I CMGCKG 1 cut(s) 871
MspCI CTTAAG 2 cut(s) 292, 934
MspR9I CCNGG 1 cut(s) 97
MunI CAATTG 1 cut(s) 269
Mva1269I GAATGC 1 cut(s) 1258
MvaI CCWGG 1 cut(s) 97
MwoI GCNNNNNNNGC 5 cut(s) 43, 219, 556, 638, 930
NdeII GATC 5 cut(s) 310, 825, 880, 1126, 1189
NmuCI GTSAC 1 cut(s) 359
NsiI ATGCAT 1 cut(s) 931
NspI RCATGY 3 cut(s) 222, 406, 933
NspV TTCGAA 3 cut(s) 125, 141, 1139
PaeI GCATGC 1 cut(s) 933
PciI ACATGT 1 cut(s) 402
PcsI WCGNNNNNNNCGW 1 cut(s) 604
PctI GAATGC 1 cut(s) 1258
PdmI GAANNNNTTC 2 cut(s) 312, 549
PfeI GAWTC 5 cut(s) 58, 326, 377, 654, 1010
PkrI GCNGC 5 cut(s) 45, 870, 873, 889, 1240
PleI GAGTC 3 cut(s) 139, 173, 415
PpsI GAGTC 3 cut(s) 139, 173, 415
PscI ACATGT 1 cut(s) 402
PsiI TTATAA 1 cut(s) 261
Psp124BI GAGCTC 1 cut(s) 11
Psp6I CCWGG 1 cut(s) 95
PspFI CCCAGC 1 cut(s) 53
PspGI CCWGG 1 cut(s) 95
PspPI GGNCC 1 cut(s) 733
PstI CTGCAG 1 cut(s) 876
PstNI CAGNNNCTG 2 cut(s) 357, 1013
PsuI RGATCY 1 cut(s) 310
PvuII CAGCTG 1 cut(s) 871
RsaI GTAC 4 cut(s) 118, 217, 979, 1123
RsaNI GTAC 4 cut(s) 117, 216, 978, 1122
RseI CAYNNNNRTG 1 cut(s) 1290
SacI GAGCTC 1 cut(s) 11
SaqAI TTAA 7 cut(s) 33, 48, 209, 293, 564, 935, 1167
SatI GCNGC 5 cut(s) 44, 869, 872, 888, 1239
Sau3AI GATC 5 cut(s) 310, 825, 880, 1126, 1189
Sau96I GGNCC 1 cut(s) 733
ScaI AGTACT 1 cut(s) 118
SchI GAGTC 3 cut(s) 140, 173, 415
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 2 cut(s) 11, 762
SfaNI GCATC 2 cut(s) 558, 1264
SfcI CTRYAG 1 cut(s) 872
SfuI TTCGAA 3 cut(s) 125, 141, 1139
SinI GGWCC 1 cut(s) 733
SmiMI CAYNNNNRTG 1 cut(s) 1290
SmlI CTYRAG 5 cut(s) 174, 292, 479, 773, 934
SmoI CTYRAG 5 cut(s) 174, 292, 479, 773, 934
SphI GCATGC 1 cut(s) 933
Sse9I AATT 9 cut(s) 169, 269, 545, 603, 708, 831, 860, 1036, 1055
SsiI CCGC 1 cut(s) 916
SspI AATATT 1 cut(s) 500
SspMI CTAG 5 cut(s) 183, 521, 668, 1046, 1311
SstI GAGCTC 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 359
TaqI TCGA 5 cut(s) 125, 141, 607, 1139, 1179
TasI AATT 9 cut(s) 169, 269, 545, 603, 708, 831, 860, 1036, 1055
TatI WGTACW 3 cut(s) 116, 215, 1121
TfiI GAWTC 5 cut(s) 58, 326, 377, 654, 1010
Tru1I TTAA 7 cut(s) 33, 48, 209, 293, 564, 935, 1167
Tru9I TTAA 7 cut(s) 33, 48, 209, 293, 564, 935, 1167
TscAI CASTG 2 cut(s) 45, 1075
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 5 cut(s) 43, 868, 871, 887, 1238
Tsp45I GTSAC 1 cut(s) 359
TspGWI ACGGA 1 cut(s) 914
TspRI CASTG 2 cut(s) 45, 1075
Vha464I CTTAAG 2 cut(s) 292, 934
VpaK11BI GGWCC 1 cut(s) 733
XapI RAATTY 1 cut(s) 169
XbaI TCTAGA 1 cut(s) 182
XceI RCATGY 3 cut(s) 222, 406, 933
XmnI GAANNNNTTC 2 cut(s) 312, 549
XspI CTAG 5 cut(s) 183, 521, 668, 1046, 1311
ZrmI AGTACT 1 cut(s) 118
Zsp2I ATGCAT 1 cut(s) 931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.