Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0014566

Physical Location & Seq

Genomic Coordinates Reverse (-)

15900104 .. 15901848

Gene Structure 1745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1101400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGAGAGCTCAACATCAAAGGCAGATATCATCATAAAGCCAGTGCTGAAAGCAGCTGTGATTCCTTTAGCTTTGTCAGTGGCTGGTTTCATCTGTGCCAAGATTATGGCTAACCGAAGCGTTAATCTGAAAGGGTCGTCAACAGGAACTGATGATCAGGTGAGTTACCTCAAGGCCAATTCTCCGAAGTTTAGAGATGAGGATGTTTTTCATAGTTTCAGCTCTGCATGTATGCTTTCAACGGAATGTTTGGAGATTCAAGATAATAAACACGTATTGGAAGAAGAGATTTCGTGCCTAAGACTCCGACTTGATGAGCTTCAGAAAAGAGAATCTGATTTGGAGATGCAGTTTATACGCTACTGCAACTTGAAAGAGCAAGAATCTGTTCTTATGGAGCTTTCGAATATGTTGTTATTGGAAGTGGCTCGTGTTGAGTTATTGGAGAGAGAAGCTTCATCCATGGAGGCTGAGAGCCAAGGGCTTGAGAAATTGGTTGGAGAATGTTTGAGAGCTTCGGAGCAAATGGAGTATTGGAAATCAGAAAATGGATTGCTTCAGAGGAAGGTAAAGAAGCTTTTGAGGAAAGCAAGAAGGCAATATCGTGTAATACGCGAACAAGACTCGAAACTTGAAGCTAGGGAAGCAGAAGCTTTGGGAATCCATGATGCACAAGAAACAAGGGCAAAGGTTATCAAGAAATTGGAGTATGAAACTGGGGAATTGAGAGCGGTTTTGGAGCGAGTGCAAGATGAGAAAAAGGGGCTCTTGGCAAGGCTTGCGTTGGCAGAAAAATCGGCGGCTTCAATCTCCAAGACTGAAGGAGAAGGGGTTAAAATCGAGGACTATACAGGCCTCGAAAAGGAGTTGGAGAATCTGAAAAAGGATCGTGCAGCTGAAATTAAGGAACTGATTTACTTGAGGTGGAGCAATGCTTGCTTAAGGCAGGAGTTGATGAGAAATCAAGCGCAACTAGAGCAGCAGGCTCAAGAGAAGGATAATAATCTGGAAATAAATTTGGAAGGAAGAGCAGAAATTGGAAATTGTGAGCAGTGCTTTGGAAATATGAGCAGCGATCAAGAGCATCCGAAAAGAAAAAAGTTATTCCGAAGGCTTAAGAGATGGGTGGAAGGGAATGAGAAGGGACGAGGAAGATTGGATGAGAAAGAAAGGCATGGACAAGTTAAGTGTTTTGGAAGACATTCTGTTTCGGATTATGCAGAGGAGCATCAGGTTGCAAGGAAGTCTTGCTTTAGTGCATCAACACATAATATTCGACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

428

Amino Acids

48.98

Weight (kDa)

6.76

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36650
fragaria_vesca	FvH4_6g17340
malus_domestica	MD12G1101400.v1.1
prunus_persica	Prupe.7G122100_v2.0.a1
pyrus_communis	pycom12g10010 pycom14g09380
rosa_chinensis	RchiOBHm_Chr3g0471481
rosa_laevigata	RLG00000024174
rosa_multiflora	Rmu_sc0006582.1_g000006 Rmu_sc0030679.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409910
rosa_rugosa	Rorug03G0118000
rosa_samantha	Rh3AG168000 Rh3BG193500 Rh3CG184000 Rh3DG182000
rosa_wichuraiana	Rw3G015830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	731
AccII	CGCG	1 cut(s)	615
AciI	CCGC	2 cut(s)	731, 800
AclWI	GGATC	1 cut(s)	894
AcsI	RAATTY	1 cut(s)	1015
AcuI	CTGAAG	3 cut(s)	305, 542, 840
AfiI	CCNNNNNNNGG	1 cut(s)	862
AflII	CTTAAG	2 cut(s)	940, 1115
AflIII	ACRYGT	1 cut(s)	271
AgsI	TTSAA	5 cut(s)	240, 260, 373, 635, 807
Alw21I	GWGCWC	1 cut(s)	11
AlwI	GGATC	1 cut(s)	894
AlwNI	CAGNNNCTG	2 cut(s)	83, 149
AoxI	GGCC	2 cut(s)	174, 853
ApeKI	GCWGC	4 cut(s)	53, 893, 979, 1071
ApoI	RAATTY	1 cut(s)	1015
Asp700I	GAANNNNTTC	2 cut(s)	387, 1201
AspLEI	GCGC	1 cut(s)	970
AsuHPI	GGTGA	1 cut(s)	172
AsuII	TTCGAA	1 cut(s)	404
BanII	GRGCYC	2 cut(s)	11, 768
BauI	CACGAG	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	1204
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	4 cut(s)	65, 905, 991, 1083
BccI	CCATC	1 cut(s)	1116
BcgI	CGANNNNNNTGC	2 cut(s)	777, 811
BclI	TGATCA	1 cut(s)	154
BfaI	CTAG	2 cut(s)	639, 974
BfrI	CTTAAG	2 cut(s)	940, 1115
BisI	GCNGC	5 cut(s)	54, 801, 894, 980, 1072
BlsI	GCNGC	5 cut(s)	55, 802, 895, 981, 1073
BmrI	ACTGGG	1 cut(s)	726
BmsI	GCATC	5 cut(s)	336, 658, 1093, 1237, 1268
BmuI	ACTGGG	1 cut(s)	726
BpiI	GAAGAC	1 cut(s)	1204
Bpu14I	TTCGAA	1 cut(s)	404
BpuEI	CTTGAG	4 cut(s)	155, 506, 940, 972
BsaAI	YACGTR	1 cut(s)	274
BsaBI	GATNNNNATC	1 cut(s)	1002
BsaJI	CCNNGG	2 cut(s)	462, 478
BsaXI	ACNNNNNCTCC	4 cut(s)	335, 365, 816, 846
Bsc4I	CCNNNNNNNGG	1 cut(s)	862
Bse1I	ACTGG	2 cut(s)	41, 721
Bse3DI	GCAATG	1 cut(s)	937
Bse8I	GATNNNNATC	1 cut(s)	1002
BseDI	CCNNGG	2 cut(s)	462, 478
BseGI	GGATG	4 cut(s)	208, 458, 1084, 1165
BseJI	GATNNNNATC	1 cut(s)	1002
BseLI	CCNNNNNNNGG	1 cut(s)	862
BseMI	GCAATG	1 cut(s)	937
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	2 cut(s)	41, 721
BseRI	GAGGAG	1 cut(s)	1238
BseXI	GCAGC	4 cut(s)	65, 905, 991, 1083
BsgI	GTGCAG	1 cut(s)	912
Bsh1236I	CGCG	1 cut(s)	615
BshFI	GGCC	2 cut(s)	176, 855
BsiHKAI	GWGCWC	1 cut(s)	11
BslFI	GGGAC	1 cut(s)	1158
BslI	CCNNNNNNNGG	1 cut(s)	862
BsmFI	GGGAC	1 cut(s)	1158
BsnI	GGCC	2 cut(s)	176, 855
Bsp119I	TTCGAA	1 cut(s)	404
Bsp1286I	GDGCHC	2 cut(s)	11, 768
Bsp143I	GATC	3 cut(s)	154, 886, 1075
Bsp19I	CCATGG	1 cut(s)	462
BspACI	CCGC	2 cut(s)	731, 800
BspANI	GGCC	2 cut(s)	176, 855
BspCNI	CTCAG	1 cut(s)	463
BspFNI	CGCG	1 cut(s)	615
BspPI	GGATC	1 cut(s)	894
BspQI	GCTCTTC	1 cut(s)	1021
BspT104I	TTCGAA	1 cut(s)	404
BspTI	CTTAAG	2 cut(s)	940, 1115
BsrBI	CCGCTC	1 cut(s)	731
BsrDI	GCAATG	1 cut(s)	937
BsrI	ACTGG	2 cut(s)	41, 721
BssECI	CCNNGG	2 cut(s)	462, 478
BssMI	GATC	3 cut(s)	154, 886, 1075
BssSI	CACGAG	1 cut(s)	429
BssT1I	CCWWGG	2 cut(s)	462, 478
Bst2BI	CACGAG	1 cut(s)	429
Bst6I	CTCTTC	2 cut(s)	279, 1021
BstAFI	CTTAAG	2 cut(s)	940, 1115
BstAPI	GCANNNNNTGC	2 cut(s)	779, 936
BstBAI	YACGTR	1 cut(s)	274
BstBI	TTCGAA	1 cut(s)	404
BstC8I	GCNNGC	3 cut(s)	780, 937, 984
BstDEI	CTNAG	2 cut(s)	299, 471
BstDSI	CCRYGG	1 cut(s)	462
BstENI	CCTNNNNNAGG	1 cut(s)	860
BstF5I	GGATG	4 cut(s)	208, 458, 1084, 1165
BstFNI	CGCG	1 cut(s)	615
BstHHI	GCGC	1 cut(s)	970
BstKTI	GATC	3 cut(s)	157, 889, 1078
BstMBI	GATC	3 cut(s)	154, 886, 1075
BstMWI	GCNNNNNNNGC	4 cut(s)	644, 779, 936, 976
BstNSI	RCATGY	1 cut(s)	231
BstUI	CGCG	1 cut(s)	615
BstV1I	GCAGC	4 cut(s)	65, 905, 991, 1083
BstV2I	GAAGAC	1 cut(s)	1204
BstXI	CCANNNNNNTGG	1 cut(s)	106
BsuRI	GGCC	2 cut(s)	176, 855
BtgI	CCRYGG	1 cut(s)	462
BtsCI	GGATG	4 cut(s)	208, 458, 1084, 1165
BtsI	GCAGTG	1 cut(s)	1058
BtsIMutI	CAGTG	3 cut(s)	48, 84, 1058
Cac8I	GCNNGC	3 cut(s)	780, 937, 984
CaiI	CAGNNNCTG	2 cut(s)	83, 149
CfoI	GCGC	1 cut(s)	970
CviAII	CATG	4 cut(s)	228, 463, 665, 1175
DdeI	CTNAG	2 cut(s)	299, 471
DpnI	GATC	3 cut(s)	156, 888, 1077
DpnII	GATC	3 cut(s)	154, 886, 1075
Eam1104I	CTCTTC	2 cut(s)	279, 1021
EarI	CTCTTC	2 cut(s)	279, 1021
Ecl136II	GAGCTC	1 cut(s)	9
Eco130I	CCWWGG	2 cut(s)	462, 478
Eco147I	AGGCCT	1 cut(s)	855
Eco24I	GRGCYC	2 cut(s)	11, 768
Eco32I	GATATC	1 cut(s)	28
Eco53kI	GAGCTC	1 cut(s)	9
Eco57I	CTGAAG	3 cut(s)	305, 542, 840
EcoICRI	GAGCTC	1 cut(s)	9
EcoNI	CCTNNNNNAGG	1 cut(s)	860
EcoRV	GATATC	1 cut(s)	28
EcoT14I	CCWWGG	2 cut(s)	462, 478
EcoT38I	GRGCYC	2 cut(s)	11, 768
ErhI	CCWWGG	2 cut(s)	462, 478
FaeI	CATG	4 cut(s)	231, 466, 668, 1178
FalI	AAGNNNNNCTT	6 cut(s)	752, 784, 1231, 1263, 1235, 1267
FaqI	GGGAC	1 cut(s)	1158
FatI	CATG	4 cut(s)	227, 462, 664, 1174
FbaI	TGATCA	1 cut(s)	154
Fnu4HI	GCNGC	5 cut(s)	54, 801, 894, 980, 1072
FokI	GGATG	4 cut(s)	215, 445, 1071, 1172
FriOI	GRGCYC	2 cut(s)	11, 768
Fsp4HI	GCNGC	5 cut(s)	54, 801, 894, 980, 1072
FspBI	CTAG	2 cut(s)	639, 974
GlaI	GCGC	1 cut(s)	969
GluI	GCNGC	5 cut(s)	54, 801, 894, 980, 1072
HaeIII	GGCC	2 cut(s)	176, 855
HhaI	GCGC	1 cut(s)	970
Hin1II	CATG	4 cut(s)	231, 466, 668, 1178
Hin6I	GCGC	1 cut(s)	968
HinP1I	GCGC	1 cut(s)	968
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HindIII	AAGCTT	3 cut(s)	453, 575, 651
HinfI	GANTC	8 cut(s)	61, 256, 303, 332, 383, 623, 660, 874
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188III	TCNNGA	5 cut(s)	260, 697, 989, 1007, 1079
Hpy8I	GTNNAC	1 cut(s)	141
HpyAV	CCTTC	9 cut(s)	559, 588, 815, 821, 988, 1016, 1104, 1124, 1135
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	9 cut(s)	227, 349, 366, 671, 748, 893, 1220, 1238, 1259
HpyF10VI	GCNNNNNNNGC	4 cut(s)	644, 779, 936, 976
HpyF3I	CTNAG	2 cut(s)	299, 471
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	4 cut(s)	231, 466, 668, 1178
HspAI	GCGC	1 cut(s)	968
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	3 cut(s)	154, 886, 1075
LguI	GCTCTTC	1 cut(s)	1021
LmnI	GCTCC	5 cut(s)	397, 520, 739, 927, 1225
Lsp1109I	GCAGC	4 cut(s)	65, 905, 991, 1083
LweI	GCATC	5 cut(s)	336, 658, 1093, 1237, 1268
MaeI	CTAG	2 cut(s)	639, 974
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	3 cut(s)	156, 888, 1077
MbiI	CCGCTC	1 cut(s)	731
MboI	GATC	3 cut(s)	154, 886, 1075
MboII	GAAGA	5 cut(s)	293, 296, 1038, 1164, 1209
MhlI	GDGCHC	2 cut(s)	11, 768
MluCI	AATT	8 cut(s)	178, 491, 701, 722, 900, 1015, 1035, 1042
MlyI	GAGTC	2 cut(s)	297, 617
MmeI	TCCRAC	3 cut(s)	331, 478, 849
MroXI	GAANNNNTTC	2 cut(s)	387, 1201
MseI	TTAA	6 cut(s)	123, 834, 903, 941, 1116, 1185
MspA1I	CMGCKG	2 cut(s)	56, 896
MspCI	CTTAAG	2 cut(s)	940, 1115
MvnI	CGCG	1 cut(s)	615
MwoI	GCNNNNNNNGC	4 cut(s)	644, 779, 936, 976
NcoI	CCATGG	1 cut(s)	462
NdeII	GATC	3 cut(s)	154, 886, 1075
NlaIII	CATG	4 cut(s)	231, 466, 668, 1178
NspI	RCATGY	1 cut(s)	231
NspV	TTCGAA	1 cut(s)	404
PceI	AGGCCT	1 cut(s)	855
PciSI	GCTCTTC	1 cut(s)	1021
PdmI	GAANNNNTTC	2 cut(s)	387, 1201
PfeI	GAWTC	6 cut(s)	61, 256, 332, 383, 660, 874
PkrI	GCNGC	5 cut(s)	55, 802, 895, 981, 1073
PleI	GAGTC	2 cut(s)	297, 617
PpsI	GAGTC	2 cut(s)	297, 617
Ppu21I	YACGTR	1 cut(s)	274
Psp124BI	GAGCTC	1 cut(s)	11
PstNI	CAGNNNCTG	2 cut(s)	83, 149
PvuII	CAGCTG	2 cut(s)	56, 896
SacI	GAGCTC	1 cut(s)	11
SapI	GCTCTTC	1 cut(s)	1021
SaqAI	TTAA	6 cut(s)	123, 834, 903, 941, 1116, 1185
SatI	GCNGC	5 cut(s)	54, 801, 894, 980, 1072
Sau3AI	GATC	3 cut(s)	154, 886, 1075
SchI	GAGTC	2 cut(s)	297, 617
SduI	GDGCHC	2 cut(s)	11, 768
SfaNI	GCATC	5 cut(s)	336, 658, 1093, 1237, 1268
SfuI	TTCGAA	1 cut(s)	404
SmlI	CTYRAG	6 cut(s)	170, 485, 919, 940, 987, 1115
SmoI	CTYRAG	6 cut(s)	170, 485, 919, 940, 987, 1115
Sse9I	AATT	8 cut(s)	178, 491, 701, 722, 900, 1015, 1035, 1042
SseBI	AGGCCT	1 cut(s)	855
SsiI	CCGC	2 cut(s)	731, 800
SspI	AATATT	1 cut(s)	1273
SspMI	CTAG	2 cut(s)	639, 974
SstI	GAGCTC	1 cut(s)	11
StuI	AGGCCT	1 cut(s)	855
StyI	CCWWGG	2 cut(s)	462, 478
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	5 cut(s)	404, 626, 840, 858, 1276
TasI	AATT	8 cut(s)	178, 491, 701, 722, 900, 1015, 1035, 1042
TauI	GCSGC	1 cut(s)	803
TfiI	GAWTC	6 cut(s)	61, 256, 332, 383, 660, 874
Tru1I	TTAA	6 cut(s)	123, 834, 903, 941, 1116, 1185
Tru9I	TTAA	6 cut(s)	123, 834, 903, 941, 1116, 1185
TscAI	CASTG	3 cut(s)	48, 84, 1058
TseI	GCWGC	4 cut(s)	53, 893, 979, 1071
TspDTI	ATGAA	4 cut(s)	79, 200, 447, 726
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	3 cut(s)	48, 84, 1058
Vha464I	CTTAAG	2 cut(s)	940, 1115
XagI	CCTNNNNNAGG	1 cut(s)	860
XapI	RAATTY	1 cut(s)	1015
XceI	RCATGY	1 cut(s)	231
XmnI	GAANNNNTTC	2 cut(s)	387, 1201
XspI	CTAG	2 cut(s)	639, 974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.