Protein CHUP1, chloroplastic
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G36650 |
| fragaria_vesca | FvH4_6g17340 |
| malus_domestica | MD12G1101400.v1.1 |
| prunus_persica | Prupe.7G122100_v2.0.a1 |
| pyrus_communis | pycom12g10010 pycom14g09380 |
| rosa_chinensis | RchiOBHm_Chr3g0471481 |
| rosa_laevigata | RLG00000024174 |
| rosa_multiflora | Rmu_sc0006582.1_g000006 Rmu_sc0030679.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00409910 |
| rosa_rugosa | Rorug03G0118000 |
| rosa_samantha | Rh3AG168000 Rh3BG193500 Rh3CG184000 Rh3DG182000 |
| rosa_wichuraiana | Rw3G015830 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 638 |
| AccII | CGCG | 1 cut(s) | 522 |
| AciI | CCGC | 1 cut(s) | 638 |
| AcsI | RAATTY | 2 cut(s) | 381, 944 |
| AcuI | CTGAAG | 3 cut(s) | 305, 449, 768 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 790 |
| AflIII | ACRYGT | 2 cut(s) | 227, 271 |
| AgsI | TTSAA | 8 cut(s) | 220, 240, 260, 371, 542, 714, 742, 950 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 83, 149 |
| AoxI | GGCC | 2 cut(s) | 174, 781 |
| ApeKI | GCWGC | 3 cut(s) | 53, 821, 979 |
| ApoI | RAATTY | 2 cut(s) | 381, 944 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 122, 154 |
| AseI | ATTAAT | 1 cut(s) | 123 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 385 |
| AspLEI | GCGC | 1 cut(s) | 898 |
| AsuHPI | GGTGA | 2 cut(s) | 172, 736 |
| AxyI | CCTNAGG | 1 cut(s) | 869 |
| BbvI | GCAGC | 3 cut(s) | 65, 833, 991 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 684, 718 |
| BciVI | GTATCC | 1 cut(s) | 1003 |
| BfaI | CTAG | 3 cut(s) | 546, 650, 902 |
| BfuI | GTATCC | 1 cut(s) | 1003 |
| BisI | GCNGC | 3 cut(s) | 54, 822, 980 |
| BlsI | GCNGC | 3 cut(s) | 55, 823, 981 |
| BmrI | ACTGGG | 1 cut(s) | 633 |
| BmsI | GCATC | 2 cut(s) | 336, 565 |
| BmuI | ACTGGG | 1 cut(s) | 633 |
| BpuEI | CTTGAG | 3 cut(s) | 155, 868, 900 |
| BsaAI | YACGTR | 1 cut(s) | 274 |
| BsaJI | CCNNGG | 1 cut(s) | 720 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 335, 365, 744, 774 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 790 |
| Bse1I | ACTGG | 2 cut(s) | 628, 939 |
| Bse21I | CCTNAGG | 1 cut(s) | 869 |
| Bse3DI | GCAATG | 1 cut(s) | 865 |
| BseDI | CCNNGG | 1 cut(s) | 720 |
| BseGI | GGATG | 1 cut(s) | 664 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 790 |
| BseMI | GCAATG | 1 cut(s) | 865 |
| BseMII | CTCAG | 1 cut(s) | 327 |
| BseNI | ACTGG | 2 cut(s) | 628, 939 |
| BseXI | GCAGC | 3 cut(s) | 65, 833, 991 |
| BsgI | GTGCAG | 2 cut(s) | 674, 840 |
| Bsh1236I | CGCG | 1 cut(s) | 522 |
| BshFI | GGCC | 2 cut(s) | 176, 783 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 790 |
| BsnI | GGCC | 2 cut(s) | 176, 783 |
| Bsp143I | GATC | 1 cut(s) | 983 |
| BspACI | CCGC | 1 cut(s) | 638 |
| BspANI | GGCC | 2 cut(s) | 176, 783 |
| BspCNI | CTCAG | 1 cut(s) | 328 |
| BspFNI | CGCG | 1 cut(s) | 522 |
| BsrBI | CCGCTC | 1 cut(s) | 638 |
| BsrDI | GCAATG | 1 cut(s) | 865 |
| BsrI | ACTGG | 2 cut(s) | 628, 939 |
| BssECI | CCNNGG | 1 cut(s) | 720 |
| BssMI | GATC | 1 cut(s) | 983 |
| BssT1I | CCWWGG | 1 cut(s) | 720 |
| Bst6I | CTCTTC | 1 cut(s) | 740 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 686, 864 |
| BstBAI | YACGTR | 1 cut(s) | 274 |
| BstC8I | GCNNGC | 3 cut(s) | 687, 865, 912 |
| BstDEI | CTNAG | 3 cut(s) | 299, 336, 869 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 788 |
| BstF5I | GGATG | 1 cut(s) | 664 |
| BstFNI | CGCG | 1 cut(s) | 522 |
| BstHHI | GCGC | 1 cut(s) | 898 |
| BstKTI | GATC | 1 cut(s) | 986 |
| BstMBI | GATC | 1 cut(s) | 983 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 551, 686, 864 |
| BstNSI | RCATGY | 1 cut(s) | 231 |
| BstUI | CGCG | 1 cut(s) | 522 |
| BstV1I | GCAGC | 3 cut(s) | 65, 833, 991 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 106 |
| Bsu36I | CCTNAGG | 1 cut(s) | 869 |
| BsuI | GTATCC | 1 cut(s) | 1003 |
| BsuRI | GGCC | 2 cut(s) | 176, 783 |
| BtsCI | GGATG | 1 cut(s) | 664 |
| BtsIMutI | CAGTG | 1 cut(s) | 84 |
| Cac8I | GCNNGC | 3 cut(s) | 687, 865, 912 |
| CaiI | CAGNNNCTG | 2 cut(s) | 83, 149 |
| CfoI | GCGC | 1 cut(s) | 898 |
| CviAII | CATG | 2 cut(s) | 228, 572 |
| DdeI | CTNAG | 3 cut(s) | 299, 336, 869 |
| DpnI | GATC | 1 cut(s) | 985 |
| DpnII | GATC | 1 cut(s) | 983 |
| Eam1104I | CTCTTC | 1 cut(s) | 740 |
| EarI | CTCTTC | 1 cut(s) | 740 |
| Eco130I | CCWWGG | 1 cut(s) | 720 |
| Eco147I | AGGCCT | 1 cut(s) | 783 |
| Eco57I | CTGAAG | 3 cut(s) | 305, 449, 768 |
| Eco81I | CCTNAGG | 1 cut(s) | 869 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 788 |
| EcoT14I | CCWWGG | 1 cut(s) | 720 |
| ErhI | CCWWGG | 1 cut(s) | 720 |
| FaeI | CATG | 2 cut(s) | 231, 575 |
| FatI | CATG | 2 cut(s) | 227, 571 |
| Fnu4HI | GCNGC | 3 cut(s) | 54, 822, 980 |
| FokI | GGATG | 1 cut(s) | 671 |
| Fsp4HI | GCNGC | 3 cut(s) | 54, 822, 980 |
| FspBI | CTAG | 3 cut(s) | 546, 650, 902 |
| GlaI | GCGC | 1 cut(s) | 897 |
| GluI | GCNGC | 3 cut(s) | 54, 822, 980 |
| HaeIII | GGCC | 2 cut(s) | 176, 783 |
| HhaI | GCGC | 1 cut(s) | 898 |
| Hin1II | CATG | 2 cut(s) | 231, 575 |
| Hin6I | GCGC | 1 cut(s) | 896 |
| HinP1I | GCGC | 1 cut(s) | 896 |
| HincII | GTYRAC | 1 cut(s) | 141 |
| HindII | GTYRAC | 1 cut(s) | 141 |
| HindIII | AAGCTT | 3 cut(s) | 482, 558, 683 |
| HinfI | GANTC | 6 cut(s) | 61, 256, 332, 530, 567, 802 |
| HphI | GGTGA | 2 cut(s) | 172, 736 |
| Hpy166II | GTNNAC | 1 cut(s) | 141 |
| Hpy188I | TCNGA | 7 cut(s) | 186, 324, 337, 451, 468, 997, 1017 |
| Hpy188III | TCNNGA | 4 cut(s) | 260, 604, 917, 987 |
| Hpy8I | GTNNAC | 1 cut(s) | 141 |
| HpyAV | CCTTC | 7 cut(s) | 466, 495, 743, 749, 916, 944, 1012 |
| HpyCH4IV | ACGT | 1 cut(s) | 273 |
| HpyCH4V | TGCA | 5 cut(s) | 349, 366, 578, 655, 821 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 551, 686, 864 |
| HpyF3I | CTNAG | 3 cut(s) | 299, 336, 869 |
| HpySE526I | ACGT | 1 cut(s) | 273 |
| Hsp92II | CATG | 2 cut(s) | 231, 575 |
| HspAI | GCGC | 1 cut(s) | 896 |
| Kzo9I | GATC | 1 cut(s) | 983 |
| LmnI | GCTCC | 3 cut(s) | 427, 646, 855 |
| LpnPI | CCDG | 8 cut(s) | 69, 143, 609, 641, 765, 896, 920, 972 |
| Lsp1109I | GCAGC | 3 cut(s) | 65, 833, 991 |
| LweI | GCATC | 2 cut(s) | 336, 565 |
| MaeI | CTAG | 3 cut(s) | 546, 650, 902 |
| MaeII | ACGT | 1 cut(s) | 273 |
| MaeIII | GTNAC | 1 cut(s) | 164 |
| MalI | GATC | 1 cut(s) | 985 |
| MbiI | CCGCTC | 1 cut(s) | 638 |
| MboI | GATC | 1 cut(s) | 983 |
| MboII | GAAGA | 2 cut(s) | 727, 730 |
| MluCI | AATT | 9 cut(s) | 178, 381, 398, 608, 629, 828, 944, 963, 970 |
| MlyI | GAGTC | 1 cut(s) | 524 |
| MmeI | TCCRAC | 3 cut(s) | 321, 385, 777 |
| MnlI | CCTC | 5 cut(s) | 179, 462, 483, 794, 843 |
| MroXI | GAANNNNTTC | 1 cut(s) | 385 |
| MseI | TTAA | 5 cut(s) | 11, 48, 123, 831, 1024 |
| MspA1I | CMGCKG | 2 cut(s) | 56, 824 |
| MvnI | CGCG | 1 cut(s) | 522 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 551, 686, 864 |
| NdeII | GATC | 1 cut(s) | 983 |
| NlaIII | CATG | 2 cut(s) | 231, 575 |
| NspI | RCATGY | 1 cut(s) | 231 |
| PceI | AGGCCT | 1 cut(s) | 783 |
| PciI | ACATGT | 1 cut(s) | 227 |
| PdmI | GAANNNNTTC | 1 cut(s) | 385 |
| PfeI | GAWTC | 5 cut(s) | 61, 256, 332, 567, 802 |
| PkrI | GCNGC | 3 cut(s) | 55, 823, 981 |
| PleI | GAGTC | 1 cut(s) | 524 |
| PpsI | GAGTC | 1 cut(s) | 524 |
| Ppu21I | YACGTR | 1 cut(s) | 274 |
| PscI | ACATGT | 1 cut(s) | 227 |
| PshBI | ATTAAT | 1 cut(s) | 123 |
| PstNI | CAGNNNCTG | 2 cut(s) | 83, 149 |
| PvuII | CAGCTG | 2 cut(s) | 56, 824 |
| SaqAI | TTAA | 5 cut(s) | 11, 48, 123, 831, 1024 |
| SatI | GCNGC | 3 cut(s) | 54, 822, 980 |
| Sau3AI | GATC | 1 cut(s) | 983 |
| SchI | GAGTC | 1 cut(s) | 524 |
| SfaNI | GCATC | 2 cut(s) | 336, 565 |
| SmlI | CTYRAG | 3 cut(s) | 170, 847, 915 |
| SmoI | CTYRAG | 3 cut(s) | 170, 847, 915 |
| Sse9I | AATT | 9 cut(s) | 178, 381, 398, 608, 629, 828, 944, 963, 970 |
| SseBI | AGGCCT | 1 cut(s) | 783 |
| SsiI | CCGC | 1 cut(s) | 638 |
| SspMI | CTAG | 3 cut(s) | 546, 650, 902 |
| StuI | AGGCCT | 1 cut(s) | 783 |
| StyI | CCWWGG | 1 cut(s) | 720 |
| TaiI | ACGT | 1 cut(s) | 276 |
| TaqI | TCGA | 3 cut(s) | 307, 533, 786 |
| TasI | AATT | 9 cut(s) | 178, 381, 398, 608, 629, 828, 944, 963, 970 |
| TfiI | GAWTC | 5 cut(s) | 61, 256, 332, 567, 802 |
| Tru1I | TTAA | 5 cut(s) | 11, 48, 123, 831, 1024 |
| Tru9I | TTAA | 5 cut(s) | 11, 48, 123, 831, 1024 |
| TscAI | CASTG | 1 cut(s) | 84 |
| TseI | GCWGC | 3 cut(s) | 53, 821, 979 |
| TspDTI | ATGAA | 3 cut(s) | 79, 200, 633 |
| TspGWI | ACGGA | 1 cut(s) | 891 |
| TspRI | CASTG | 1 cut(s) | 84 |
| VspI | ATTAAT | 1 cut(s) | 123 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 788 |
| XapI | RAATTY | 2 cut(s) | 381, 944 |
| XceI | RCATGY | 1 cut(s) | 231 |
| XmnI | GAANNNNTTC | 1 cut(s) | 385 |
| XspI | CTAG | 3 cut(s) | 546, 650, 902 |