Prupe.7G122100_v2.0.a1

Protein CHUP1, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014566
Physical Location & Seq
Forward (+)
14506079 .. 14508015
1937 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G122100.1

Sequence Viewer

Length: 1308 bp
ATGGAGAGCTCAACATCGAAGGTAGAGGTCATCATAAGGCCTATGCTGCTTAAAACTGGGATTCCTTTAGCTTTGTCTGTGGTTGGTTTCATCTGTGCAAAGCTTATGGCTAAAAGAAGCTTGAATCCTAAAGAGTCTTTATCAGAAGCTGATGATCAGGTGCTTAGAGATGGGGATAGCTTTCATAGTTTCAGTTCTACATGTGTGTTTTCCATGGAAGATCATGAACCAATTATCATGGATGCAAATGTCATGAATTTGGCAGAAAGTTTGGAGATTGGATATAATAAACACGAATTGGAGGAAGAGTTTTCGTTCCTAAGAATCCGACTTGATGATCTTCAAAACAGAGAATCTGAGTTGGAGATGCAATTTATCCACTACTGTTACTTGGAAGAGAAAAAATCTGTTGTTGTGGAGCTGAGGAATATGTTGTTATTGGAAATGGCTCATGTTGAGTTTTTCAACAGAGAATTTTCATCCATGGAGGCTGAGAGCCAAAGGCTTGAGAAGTTGGTAGTAGAATATTTGAGGATTTTGGAGCAACTTGAGTATTGGAAATCAGAAAATGGATTTCTTCAGAGAAAGGTAAAGAAGCTTTTGAGGAAAGCAAGTCGGCAATCTCGAATAATGCAAAAACAAGATTTGAAGCTTGAAGCTTGGGAAGCAGAAGTTTTGAGGATATATGATGTACTAGAAACAAGGACAAAGGTTATCAAGAAATTGGAAGATGAAGTTGGGGAGCTGAGAGTGGTTTTGGGCCAAGTGCAGGATGAGAAAAATGTGCTCTTGGCAAAGCTTGAATTGGCAGAAAAATCAGCTTCCTCAATCTCCAAGATTGGAGGAGAAGGGATCAAAATTGAAGTCCTCAAAAAGGAAATAGAGCAGCTGCAGAAGGATCGTGCAGCTGAACTGAAGGAACTGGTTTACTTGCGGTGGAGCAATGCTTGCTTAAGGCACGAGTTGATGAGGAATCAAGCACAAGAAGAGCAGCAAGATCAGGAGAAGAACAATAATTTGGCAACAGATTTTGAAGGAAGCGGAGAAATTGCAGATTATGGGTTAGCTAGCATGGTTTTGGAGCATAATGAGCCTTGCTTTGGAATTGTGAGCGGCGATCAGGCTTGTTCGGAAAGGCAAAAGCTATTTCAAAGGCTTAGAAGATTGGTGGAAGGCAGTGACAAGGCAAAAGGAAGAAGATTGGGTGAGAAAGAAAGGAATGAAGAAGTCAAGTGTTTTGGAAGGCATTCTGTTTCAGCTGATGCAGAGGCACATCACATTGCAAGGAGTTCTTGCGCTAGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

436

Amino Acids

50.06

Weight (kDa)

5.44

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014566)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36650
fragaria_vesca FvH4_6g17340
malus_domestica MD12G1101400.v1.1
prunus_persica Prupe.7G122100_v2.0.a1
pyrus_communis pycom12g10010 pycom14g09380
rosa_chinensis RchiOBHm_Chr3g0471481
rosa_laevigata RLG00000024174
rosa_multiflora Rmu_sc0006582.1_g000006 Rmu_sc0030679.1_g000001
rosa_roxburghii Rroxscaffold_6G00409910
rosa_rugosa Rorug03G0118000
rosa_samantha Rh3AG168000 Rh3BG193500 Rh3CG184000 Rh3DG182000
rosa_wichuraiana Rw3G015830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1113
AciI CCGC 3 cut(s) 934, 1041, 1113
AclWI GGATC 2 cut(s) 860, 906
AcsI RAATTY 2 cut(s) 256, 473
AcuI CTGAAG 2 cut(s) 563, 935
AfaI GTAC 1 cut(s) 693
AfiI CCNNNNNNNGG 3 cut(s) 769, 874, 1100
AflII CTTAAG 1 cut(s) 952
AflIII ACRYGT 1 cut(s) 200
AgsI TTSAA 9 cut(s) 124, 344, 466, 649, 656, 803, 863, 1034, 1151
AjuI GAANNNNNNNTTGG 4 cut(s) 720, 752, 1001, 1033
Alw21I GWGCWC 2 cut(s) 11, 789
AlwI GGATC 2 cut(s) 860, 906
AlwNI CAGNNNCTG 1 cut(s) 149
AoxI GGCC 2 cut(s) 38, 760
ApeKI GCWGC 5 cut(s) 46, 886, 889, 905, 991
ApoI RAATTY 2 cut(s) 256, 473
ArsI GACNNNNNNTTYG 2 cut(s) 849, 881
Asp700I GAANNNNTTC 1 cut(s) 1246
AspLEI GCGC 1 cut(s) 1298
AspS9I GGNCC 1 cut(s) 760
AsuHPI GGTGA 1 cut(s) 1217
AsuNHI GCTAGC 1 cut(s) 1067
BanII GRGCYC 1 cut(s) 11
BauI CACGAG 1 cut(s) 959
Bbv12I GWGCWC 2 cut(s) 11, 789
BbvCI CCTCAGC 1 cut(s) 422
BbvI GCAGC 5 cut(s) 33, 876, 898, 917, 1003
BccI CCATC 1 cut(s) 164
BcgI CGANNNNNNTGC 2 cut(s) 881, 915
BclI TGATCA 1 cut(s) 154
BfaI CTAG 3 cut(s) 695, 1068, 1299
BfmI CTRYAG 1 cut(s) 890
BfrI CTTAAG 1 cut(s) 952
BisI GCNGC 6 cut(s) 47, 887, 890, 906, 992, 1114
BlsI GCNGC 6 cut(s) 48, 888, 891, 907, 993, 1115
BmgT120I GGNCC 1 cut(s) 760
BmrI ACTGGG 1 cut(s) 66
BmsI GCATC 3 cut(s) 232, 357, 1252
BmtI GCTAGC 1 cut(s) 1071
BmuI ACTGGG 1 cut(s) 66
Bpu10I CCTNAGC 1 cut(s) 422
BpuEI CTTGAG 2 cut(s) 527, 569
BsaJI CCNNGG 2 cut(s) 213, 483
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bsc4I CCNNNNNNNGG 3 cut(s) 769, 874, 1100
Bse1I ACTGG 2 cut(s) 61, 927
Bse3DI GCAATG 2 cut(s) 949, 1278
BseDI CCNNGG 2 cut(s) 213, 483
BseGI GGATG 3 cut(s) 247, 479, 778
BseLI CCNNNNNNNGG 3 cut(s) 769, 874, 1100
BseMI GCAATG 2 cut(s) 949, 1278
BseMII CTCAG 4 cut(s) 348, 413, 483, 737
BseNI ACTGG 2 cut(s) 61, 927
BseRI GAGGAG 1 cut(s) 858
BseXI GCAGC 5 cut(s) 33, 876, 898, 917, 1003
BsgI GTGCAG 2 cut(s) 788, 924
BshFI GGCC 2 cut(s) 40, 762
BsiHKAI GWGCWC 2 cut(s) 11, 789
BslI CCNNNNNNNGG 3 cut(s) 769, 874, 1100
BsmI GAATGC 1 cut(s) 1246
BsnI GGCC 2 cut(s) 40, 762
Bsp1286I GDGCHC 2 cut(s) 11, 789
Bsp143I GATC 7 cut(s) 154, 220, 337, 852, 898, 997, 1117
Bsp19I CCATGG 2 cut(s) 213, 483
BspACI CCGC 3 cut(s) 934, 1041, 1113
BspANI GGCC 2 cut(s) 40, 762
BspCNI CTCAG 4 cut(s) 349, 414, 484, 738
BspHI TCATGA 2 cut(s) 223, 252
BspMAI CTGCAG 1 cut(s) 894
BspOI GCTAGC 1 cut(s) 1071
BspPI GGATC 2 cut(s) 860, 906
BspQI GCTCTTC 1 cut(s) 981
BspTI CTTAAG 1 cut(s) 952
BsrBI CCGCTC 1 cut(s) 1113
BsrDI GCAATG 2 cut(s) 949, 1278
BsrI ACTGG 2 cut(s) 61, 927
BssECI CCNNGG 2 cut(s) 213, 483
BssMI GATC 7 cut(s) 154, 220, 337, 852, 898, 997, 1117
BssSI CACGAG 1 cut(s) 959
BssT1I CCWWGG 2 cut(s) 213, 483
Bst2BI CACGAG 1 cut(s) 959
Bst4CI ACNGT 1 cut(s) 386
Bst6I CTCTTC 3 cut(s) 300, 390, 981
BstAFI CTTAAG 1 cut(s) 952
BstAPI GCANNNNNTGC 1 cut(s) 948
BstC8I GCNNGC 2 cut(s) 949, 1069
BstDEI CTNAG 7 cut(s) 164, 320, 357, 422, 492, 746, 1157
BstDSI CCRYGG 2 cut(s) 213, 483
BstENI CCTNNNNNAGG 1 cut(s) 872
BstF5I GGATG 3 cut(s) 247, 479, 778
BstHHI GCGC 1 cut(s) 1298
BstKTI GATC 7 cut(s) 157, 223, 340, 855, 901, 1000, 1120
BstMBI GATC 7 cut(s) 154, 220, 337, 852, 898, 997, 1117
BstMWI GCNNNNNNNGC 4 cut(s) 46, 665, 948, 1090
BstNSI RCATGY 1 cut(s) 204
BstSFI CTRYAG 1 cut(s) 890
BstV1I GCAGC 5 cut(s) 33, 876, 898, 917, 1003
BsuRI GGCC 2 cut(s) 40, 762
BtgI CCRYGG 2 cut(s) 213, 483
BtsCI GGATG 3 cut(s) 247, 479, 778
BtsI GCAGTG 1 cut(s) 1183
BtsIMutI CAGTG 1 cut(s) 1183
Cac8I GCNNGC 2 cut(s) 949, 1069
CaiI CAGNNNCTG 1 cut(s) 149
CciI TCATGA 2 cut(s) 223, 252
CfoI GCGC 1 cut(s) 1298
Cfr13I GGNCC 1 cut(s) 760
Csp6I GTAC 1 cut(s) 692
CviAII CATG 8 cut(s) 201, 214, 224, 238, 253, 452, 484, 1072
CviQI GTAC 1 cut(s) 692
DdeI CTNAG 7 cut(s) 164, 320, 357, 422, 492, 746, 1157
DpnI GATC 7 cut(s) 156, 222, 339, 854, 900, 999, 1119
DpnII GATC 7 cut(s) 154, 220, 337, 852, 898, 997, 1117
Eam1104I CTCTTC 3 cut(s) 300, 390, 981
EarI CTCTTC 3 cut(s) 300, 390, 981
Ecl136II GAGCTC 1 cut(s) 9
Eco130I CCWWGG 2 cut(s) 213, 483
Eco147I AGGCCT 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 11
Eco53kI GAGCTC 1 cut(s) 9
Eco57I CTGAAG 2 cut(s) 563, 935
EcoICRI GAGCTC 1 cut(s) 9
EcoNI CCTNNNNNAGG 1 cut(s) 872
EcoT14I CCWWGG 2 cut(s) 213, 483
EcoT38I GRGCYC 1 cut(s) 11
ErhI CCWWGG 2 cut(s) 213, 483
FaeI CATG 8 cut(s) 204, 217, 227, 241, 256, 455, 487, 1075
FalI AAGNNNNNCTT 2 cut(s) 1276, 1308
FatI CATG 8 cut(s) 200, 213, 223, 237, 252, 451, 483, 1071
FbaI TGATCA 1 cut(s) 154
Fnu4HI GCNGC 6 cut(s) 47, 887, 890, 906, 992, 1114
FokI GGATG 3 cut(s) 254, 466, 785
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 6 cut(s) 47, 887, 890, 906, 992, 1114
FspBI CTAG 3 cut(s) 695, 1068, 1299
GlaI GCGC 1 cut(s) 1297
GluI GCNGC 6 cut(s) 47, 887, 890, 906, 992, 1114
HaeIII GGCC 2 cut(s) 40, 762
HhaI GCGC 1 cut(s) 1298
Hin1II CATG 8 cut(s) 204, 217, 227, 241, 256, 455, 487, 1075
Hin6I GCGC 1 cut(s) 1296
HinP1I GCGC 1 cut(s) 1296
HindIII AAGCTT 6 cut(s) 101, 118, 596, 650, 657, 797
HinfI GANTC 6 cut(s) 61, 124, 134, 324, 353, 973
HphI GGTGA 1 cut(s) 1217
Hpy166II GTNNAC 1 cut(s) 928
Hpy188I TCNGA 6 cut(s) 145, 329, 358, 565, 582, 1132
Hpy188III TCNNGA 5 cut(s) 224, 253, 624, 718, 1001
Hpy8I GTNNAC 1 cut(s) 928
HpyAV CCTTC 7 cut(s) 13, 842, 889, 910, 1028, 1166, 1236
HpyCH4III ACNGT 1 cut(s) 386
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 665, 948, 1090
HpyF3I CTNAG 7 cut(s) 164, 320, 357, 422, 492, 746, 1157
Hsp92II CATG 8 cut(s) 204, 217, 227, 241, 256, 455, 487, 1075
HspAI GCGC 1 cut(s) 1296
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 7 cut(s) 154, 220, 337, 852, 898, 997, 1117
LguI GCTCTTC 1 cut(s) 981
LmnI GCTCC 5 cut(s) 418, 541, 742, 939, 1081
LpnPI CCDG 6 cut(s) 42, 143, 755, 908, 986, 1106
Lsp1109I GCAGC 5 cut(s) 33, 876, 898, 917, 1003
LweI GCATC 3 cut(s) 232, 357, 1252
MaeI CTAG 3 cut(s) 695, 1068, 1299
MaeIII GTNAC 2 cut(s) 386, 1178
MalI GATC 7 cut(s) 156, 222, 339, 854, 900, 999, 1119
MbiI CCGCTC 1 cut(s) 1113
MboI GATC 7 cut(s) 154, 220, 337, 852, 898, 997, 1117
MhlI GDGCHC 2 cut(s) 11, 789
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 2 cut(s) 342, 352
MroXI GAANNNNTTC 1 cut(s) 1246
MseI TTAA 2 cut(s) 51, 953
MspA1I CMGCKG 3 cut(s) 889, 908, 1259
MspCI CTTAAG 1 cut(s) 952
Mva1269I GAATGC 1 cut(s) 1246
MwoI GCNNNNNNNGC 4 cut(s) 46, 665, 948, 1090
NcoI CCATGG 2 cut(s) 213, 483
NdeII GATC 7 cut(s) 154, 220, 337, 852, 898, 997, 1117
NheI GCTAGC 1 cut(s) 1067
NlaIII CATG 8 cut(s) 204, 217, 227, 241, 256, 455, 487, 1075
NmuCI GTSAC 1 cut(s) 1178
NspI RCATGY 1 cut(s) 204
PagI TCATGA 2 cut(s) 223, 252
PceI AGGCCT 1 cut(s) 40
PciI ACATGT 1 cut(s) 200
PciSI GCTCTTC 1 cut(s) 981
PcsI WCGNNNNNNNCGW 1 cut(s) 622
PctI GAATGC 1 cut(s) 1246
PdmI GAANNNNTTC 1 cut(s) 1246
PfeI GAWTC 5 cut(s) 61, 124, 324, 353, 973
PkrI GCNGC 6 cut(s) 48, 888, 891, 907, 993, 1115
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PscI ACATGT 1 cut(s) 200
Psp124BI GAGCTC 1 cut(s) 11
PspPI GGNCC 1 cut(s) 760
PstI CTGCAG 1 cut(s) 894
PstNI CAGNNNCTG 1 cut(s) 149
PvuII CAGCTG 3 cut(s) 889, 908, 1259
RsaI GTAC 1 cut(s) 693
RsaNI GTAC 1 cut(s) 692
SacI GAGCTC 1 cut(s) 11
SapI GCTCTTC 1 cut(s) 981
SaqAI TTAA 2 cut(s) 51, 953
SatI GCNGC 6 cut(s) 47, 887, 890, 906, 992, 1114
Sau3AI GATC 7 cut(s) 154, 220, 337, 852, 898, 997, 1117
Sau96I GGNCC 1 cut(s) 760
SchI GAGTC 1 cut(s) 143
SduI GDGCHC 2 cut(s) 11, 789
SfaNI GCATC 3 cut(s) 232, 357, 1252
SfcI CTRYAG 1 cut(s) 890
SmlI CTYRAG 3 cut(s) 506, 548, 952
SmoI CTYRAG 3 cut(s) 506, 548, 952
SseBI AGGCCT 1 cut(s) 40
SsiI CCGC 3 cut(s) 934, 1041, 1113
SspI AATATT 1 cut(s) 527
SspMI CTAG 3 cut(s) 695, 1068, 1299
SstI GAGCTC 1 cut(s) 11
StuI AGGCCT 1 cut(s) 40
StyI CCWWGG 2 cut(s) 213, 483
TaaI ACNGT 1 cut(s) 386
TaqI TCGA 2 cut(s) 17, 625
TatI WGTACW 1 cut(s) 691
TauI GCSGC 1 cut(s) 1116
TfiI GAWTC 5 cut(s) 61, 124, 324, 353, 973
Tru1I TTAA 2 cut(s) 51, 953
Tru9I TTAA 2 cut(s) 51, 953
TscAI CASTG 1 cut(s) 1183
TseFI GTSAC 1 cut(s) 1178
TseI GCWGC 5 cut(s) 46, 886, 889, 905, 991
Tsp45I GTSAC 1 cut(s) 1178
TspDTI ATGAA 7 cut(s) 79, 173, 240, 269, 468, 747, 1236
TspRI CASTG 1 cut(s) 1183
Vha464I CTTAAG 1 cut(s) 952
XagI CCTNNNNNAGG 1 cut(s) 872
XapI RAATTY 2 cut(s) 256, 473
XceI RCATGY 1 cut(s) 204
XmnI GAANNNNTTC 1 cut(s) 1246
XspI CTAG 3 cut(s) 695, 1068, 1299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.