pycom14g09380

Protein CHUP1, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0014566
Physical Location & Seq
Reverse (-)
11221169 .. 11221808
640 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g09380.1

Sequence Viewer

Length: 537 bp
ATGCAGTTTATACGCTACTGTGACTTGAAAGAGCAAGACTTTGTTCTTATGGAGTTTTCGAATATGTTGCTATTGGTAATGGCTCTTGTTGAGTTCTTGGAGAGACAAGCTTCATCCAGGGAGGTTGAGAACCAAAGGCTTGAGAAATTCGTTGGAGGATGTTTGAGAACTTTGGAGCAAATGGAGTATTGGGAATCAGAAAATGGATTGCTTCAAAGGAAGGTAAAGAAACTTTTGAGGAAAGTAAAAGGGCAATCTTGCCTAATACACGAACAAGACTCGAAGCTTGATGCTAGGGAAGCAAAACTTTTGGGAATTCATGGTGCACTAGAAACAAAGACAAAGGTTATCAAGAAACTGAAGAATGAAACTGGGGAGTTGAGAGCGCTTTTGGAGCAATTGCAAGATGAGAAAAAGGGGCTCTTGGCAAAGCTTGGGTTGGCAAAAAAATTGACTTCTTCAGTCTCCAAGATTGAAGAAGGGATCCAAATCGAGGACTATACACTACAGGCCTCGAAAAGGAGTTGGAGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

20.63

Weight (kDa)

9.05

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014566)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36650
fragaria_vesca FvH4_6g17340
malus_domestica MD12G1101400.v1.1
prunus_persica Prupe.7G122100_v2.0.a1
pyrus_communis pycom12g10010 pycom14g09380
rosa_chinensis RchiOBHm_Chr3g0471481
rosa_laevigata RLG00000024174
rosa_multiflora Rmu_sc0006582.1_g000006 Rmu_sc0030679.1_g000001
rosa_roxburghii Rroxscaffold_6G00409910
rosa_rugosa Rorug03G0118000
rosa_samantha Rh3AG168000 Rh3BG193500 Rh3CG184000 Rh3DG182000
rosa_wichuraiana Rw3G015830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 478, 491
AcsI RAATTY 3 cut(s) 146, 315, 531
AcuI CTGAAG 2 cut(s) 380, 444
AfeI AGCGCT 1 cut(s) 387
AfiI CCNNNNNNNGG 2 cut(s) 493, 519
AgsI TTSAA 3 cut(s) 28, 215, 476
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 3 cut(s) 110, 286, 433
AluI AGCT 3 cut(s) 110, 286, 433
Alw21I GWGCWC 1 cut(s) 328
Alw26I GTCTC 2 cut(s) 97, 469
Alw44I GTGCAC 1 cut(s) 324
AlwI GGATC 2 cut(s) 478, 491
Aor51HI AGCGCT 1 cut(s) 387
AoxI GGCC 1 cut(s) 510
ApaLI GTGCAC 1 cut(s) 324
ApoI RAATTY 3 cut(s) 146, 315, 531
AspLEI GCGC 1 cut(s) 388
AsuII TTCGAA 1 cut(s) 59
BaeGI GKGCMC 1 cut(s) 328
BamHI GGATCC 1 cut(s) 483
BanII GRGCYC 1 cut(s) 423
Bbv12I GWGCWC 1 cut(s) 328
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BciT130I CCWGG 1 cut(s) 118
BcoDI GTCTC 2 cut(s) 97, 469
BfaI CTAG 2 cut(s) 294, 329
BfmI CTRYAG 1 cut(s) 506
BfoI RGCGCY 1 cut(s) 389
Bme1390I CCNGG 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 485
BmrFI CCNGG 1 cut(s) 118
BmrI ACTGGG 1 cut(s) 381
BmsI GCATC 1 cut(s) 280
BmuI ACTGGG 1 cut(s) 381
Bpu14I TTCGAA 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 161
BsaBI GATNNNNATC 1 cut(s) 488
BsaJI CCNNGG 1 cut(s) 117
Bsc4I CCNNNNNNNGG 2 cut(s) 493, 519
Bse1I ACTGG 1 cut(s) 376
Bse8I GATNNNNATC 1 cut(s) 488
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 2 cut(s) 113, 164
BseJI GATNNNNATC 1 cut(s) 488
BseLI CCNNNNNNNGG 2 cut(s) 493, 519
BseNI ACTGG 1 cut(s) 376
BseSI GKGCMC 1 cut(s) 328
BshFI GGCC 1 cut(s) 512
BsiHKAI GWGCWC 1 cut(s) 328
BslI CCNNNNNNNGG 2 cut(s) 493, 519
BsmAI GTCTC 2 cut(s) 97, 469
BsnI GGCC 1 cut(s) 512
Bsp119I TTCGAA 1 cut(s) 59
Bsp1286I GDGCHC 2 cut(s) 328, 423
Bsp143I GATC 1 cut(s) 483
BspANI GGCC 1 cut(s) 512
BspLI GGNNCC 1 cut(s) 485
BspPI GGATC 2 cut(s) 478, 491
BspT104I TTCGAA 1 cut(s) 59
BsrI ACTGG 1 cut(s) 376
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 1 cut(s) 483
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 20
BstBI TTCGAA 1 cut(s) 59
BstENI CCTNNNNNAGG 1 cut(s) 517
BstF5I GGATG 2 cut(s) 113, 164
BstH2I RGCGCY 1 cut(s) 389
BstHHI GCGC 1 cut(s) 388
BstKTI GATC 1 cut(s) 486
BstMAI GTCTC 2 cut(s) 97, 469
BstMBI GATC 1 cut(s) 483
BstMWI GCNNNNNNNGC 2 cut(s) 299, 394
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 116
BstSFI CTRYAG 1 cut(s) 506
BstSLI GKGCMC 1 cut(s) 328
BstX2I RGATCY 1 cut(s) 483
BstYI RGATCY 1 cut(s) 483
BsuRI GGCC 1 cut(s) 512
BtsCI GGATG 2 cut(s) 113, 164
CfoI GCGC 1 cut(s) 388
CviAII CATG 1 cut(s) 320
CviJI RGCY 7 cut(s) 83, 110, 139, 286, 421, 433, 512
CviKI_1 RGCY 7 cut(s) 83, 110, 139, 286, 421, 433, 512
DpnI GATC 1 cut(s) 485
DpnII GATC 1 cut(s) 483
Eco147I AGGCCT 1 cut(s) 512
Eco24I GRGCYC 1 cut(s) 423
Eco47III AGCGCT 1 cut(s) 387
Eco57I CTGAAG 2 cut(s) 380, 444
EcoNI CCTNNNNNAGG 1 cut(s) 517
EcoRI GAATTC 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 423
FaeI CATG 1 cut(s) 323
FaiI YATR 5 cut(s) 11, 50, 65, 321, 501
FalI AAGNNNNNCTT 4 cut(s) 291, 323, 407, 439
FatI CATG 1 cut(s) 319
FokI GGATG 2 cut(s) 100, 171
FriOI GRGCYC 1 cut(s) 423
FspBI CTAG 2 cut(s) 294, 329
GlaI GCGC 1 cut(s) 387
HaeII RGCGCY 1 cut(s) 389
HaeIII GGCC 1 cut(s) 512
HhaI GCGC 1 cut(s) 388
Hin1II CATG 1 cut(s) 323
Hin6I GCGC 1 cut(s) 386
HinP1I GCGC 1 cut(s) 386
HindIII AAGCTT 3 cut(s) 108, 284, 431
HinfI GANTC 2 cut(s) 194, 278
Hpy166II GTNNAC 1 cut(s) 326
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 1 cut(s) 352
Hpy8I GTNNAC 1 cut(s) 326
HpyAV CCTTC 2 cut(s) 214, 473
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4V TGCA 3 cut(s) 4, 326, 403
HpyF10VI GCNNNNNNNGC 2 cut(s) 299, 394
Hsp92II CATG 1 cut(s) 323
HspAI GCGC 1 cut(s) 386
Kzo9I GATC 1 cut(s) 483
LmnI GCTCC 2 cut(s) 175, 394
LpnPI CCDG 4 cut(s) 103, 130, 357, 494
LweI GCATC 1 cut(s) 280
MaeI CTAG 2 cut(s) 294, 329
MaeIII GTNAC 1 cut(s) 20
MalI GATC 1 cut(s) 485
MboI GATC 1 cut(s) 483
MboII GAAGA 3 cut(s) 373, 450, 488
MfeI CAATTG 1 cut(s) 398
MflI RGATCY 1 cut(s) 483
MhlI GDGCHC 2 cut(s) 328, 423
MluCI AATT 5 cut(s) 146, 315, 398, 449, 531
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 2 cut(s) 133, 506
MnlI CCTC 5 cut(s) 115, 149, 231, 487, 523
MspR9I CCNGG 1 cut(s) 118
MunI CAATTG 1 cut(s) 398
MvaI CCWGG 1 cut(s) 118
MwoI GCNNNNNNNGC 2 cut(s) 299, 394
NdeII GATC 1 cut(s) 483
NlaIII CATG 1 cut(s) 323
NlaIV GGNNCC 1 cut(s) 485
NmuCI GTSAC 1 cut(s) 20
NspV TTCGAA 1 cut(s) 59
PceI AGGCCT 1 cut(s) 512
PfeI GAWTC 1 cut(s) 194
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 485
PsuI RGATCY 1 cut(s) 483
Sau3AI GATC 1 cut(s) 483
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 2 cut(s) 328, 423
SetI ASST 6 cut(s) 112, 126, 225, 288, 348, 435
SfaNI GCATC 1 cut(s) 280
SfcI CTRYAG 1 cut(s) 506
SfuI TTCGAA 1 cut(s) 59
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 5 cut(s) 146, 315, 398, 449, 531
SseBI AGGCCT 1 cut(s) 512
SspMI CTAG 2 cut(s) 294, 329
StuI AGGCCT 1 cut(s) 512
StyD4I CCNGG 1 cut(s) 116
TaaI ACNGT 1 cut(s) 20
TaqI TCGA 4 cut(s) 59, 281, 492, 515
TasI AATT 5 cut(s) 146, 315, 398, 449, 531
TfiI GAWTC 1 cut(s) 194
TseFI GTSAC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 3 cut(s) 102, 308, 381
VneI GTGCAC 1 cut(s) 324
XagI CCTNNNNNAGG 1 cut(s) 517
XapI RAATTY 3 cut(s) 146, 315, 531
XspI CTAG 2 cut(s) 294, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.