AT2G36895

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0008404
Physical Location & Seq
Reverse (-)
15488535 .. 15490449
1915 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G36895.2

Sequence Viewer

Length: 699 bp
ATGGCAGAGACTTCTACGCTTCTCTTCTCTACCTTCTCCTCTCACCTCACGATCTCTCCTTTTCGCCAATCTCATCCCTCCGCCGCTCGATTCTCATCTCTTCTTTCCCGCGTTCGGCCATCACGATTCGCGGTTAAAGCATCACATTACGGTAACTTCTCCGATGACGATGCTTTCAACTTCTTCCCTTGGTCCGATGCAAACAACGAGATTGAATGGGTTCCTGAAGAAAGGATTACACTTTTCACATCTGATGGCTTAGTTCAGATTGGTGGCAATATGGTTCCTCGCCGCATCAAATCATCTAATAAGAAACATGGGAGATCTAGATCACTAGAAAAACATCAAAAGTTTCATGAAAGTGCTTACATGGATCCTGCTCAAGGTCTATGTCTTGGAGCTCTCTTTGACATCGCAGCGACAAATGGACTGGATATGGGAAGAAGACTATGTATCTTTGGATTCTGTCGTTCTGTTGAGATGCTTAGTGATGTTGTTGAAGATACTGTCTTAGAACACGGTGGAGAGATTGTTGCTACAGAGACAGAGAGCACAAGTGGTTTACAAGAGAAGCTAACGATGACAGTTGCGGTTCCATATCTCTGGGGGGTTCCTCCGGCTGCAGAAAGGCTTCACCTTGCAGTTCGAACCGGTGGAGGCATCGTAGACAAAGTTTATTGGCAATGGCATTTCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

25.91

Weight (kDa)

6.3

Isoelectric Point (pI)

50.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7811 PF25103 109 - 231 3.5e-64 Domain of unknown function (DUF7811)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 86
AccI GTMKAC 1 cut(s) 666
AccII CGCG 2 cut(s) 111, 131
AciI CCGC 6 cut(s) 81, 84, 109, 131, 292, 590
AclWI GGATC 2 cut(s) 368, 381
AcoI YGGCCR 1 cut(s) 116
AcuI CTGAAG 1 cut(s) 246
AfiI CCNNNNNNNGG 2 cut(s) 114, 383
AgeI ACCGGT 1 cut(s) 650
AgsI TTSAA 3 cut(s) 178, 215, 500
AluBI AGCT 2 cut(s) 401, 574
AluI AGCT 2 cut(s) 401, 574
Alw21I GWGCWC 2 cut(s) 403, 554
Alw26I GTCTC 2 cut(s) 2, 536
AlwI GGATC 2 cut(s) 368, 381
AoxI GGCC 1 cut(s) 116
ApeKI GCWGC 2 cut(s) 416, 620
AsiGI ACCGGT 1 cut(s) 650
Asp700I GAANNNNTTC 2 cut(s) 219, 630
AspS9I GGNCC 1 cut(s) 192
AsuHPI GGTGA 2 cut(s) 35, 626
AsuII TTCGAA 1 cut(s) 646
AvaII GGWCC 1 cut(s) 192
BamHI GGATCC 1 cut(s) 373
BanII GRGCYC 1 cut(s) 403
BbsI GAAGAC 1 cut(s) 451
Bbv12I GWGCWC 2 cut(s) 403, 554
BbvI GCAGC 2 cut(s) 428, 607
BccI CCATC 2 cut(s) 127, 248
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BcoDI GTCTC 2 cut(s) 2, 536
BfaI CTAG 2 cut(s) 327, 335
BfmI CTRYAG 2 cut(s) 537, 621
BglII AGATCT 1 cut(s) 323
BisI GCNGC 4 cut(s) 84, 292, 417, 621
BlsI GCNGC 4 cut(s) 85, 293, 418, 622
Bme18I GGWCC 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 192
BmiI GGNNCC 5 cut(s) 222, 285, 375, 594, 612
BmsI GCATC 6 cut(s) 149, 160, 187, 303, 471, 669
BpiI GAAGAC 1 cut(s) 451
Bpu14I TTCGAA 1 cut(s) 646
BpuEI CTTGAG 1 cut(s) 366
BsaBI GATNNNNATC 2 cut(s) 94, 328
BsaJI CCNNGG 1 cut(s) 188
BsaWI WCCGGW 1 cut(s) 650
BsaXI ACNNNNNCTCC 6 cut(s) 40, 70, 516, 546, 648, 678
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 383
Bse118I RCCGGY 1 cut(s) 650
Bse1I ACTGG 1 cut(s) 435
Bse3DI GCAATG 1 cut(s) 689
Bse8I GATNNNNATC 2 cut(s) 94, 328
BseDI CCNNGG 1 cut(s) 188
BseGI GGATG 1 cut(s) 73
BseJI GATNNNNATC 2 cut(s) 94, 328
BseLI CCNNNNNNNGG 2 cut(s) 114, 383
BseMI GCAATG 1 cut(s) 689
BseNI ACTGG 1 cut(s) 435
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 2 cut(s) 428, 607
Bsh1236I CGCG 2 cut(s) 111, 131
BshFI GGCC 1 cut(s) 118
BshTI ACCGGT 1 cut(s) 650
BsiHKAI GWGCWC 2 cut(s) 403, 554
BsiSI CCGG 2 cut(s) 617, 651
BslI CCNNNNNNNGG 2 cut(s) 114, 383
BsmAI GTCTC 2 cut(s) 2, 536
BsnI GGCC 1 cut(s) 118
Bsp119I TTCGAA 1 cut(s) 646
Bsp1286I GDGCHC 2 cut(s) 403, 554
Bsp143I GATC 4 cut(s) 51, 323, 329, 373
BspACI CCGC 6 cut(s) 81, 84, 109, 131, 292, 590
BspANI GGCC 1 cut(s) 118
BspFNI CGCG 2 cut(s) 111, 131
BspHI TCATGA 1 cut(s) 355
BspLI GGNNCC 5 cut(s) 222, 285, 375, 594, 612
BspMAI CTGCAG 1 cut(s) 625
BspPI GGATC 2 cut(s) 368, 381
BspT104I TTCGAA 1 cut(s) 646
BsrBI CCGCTC 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 689
BsrFI RCCGGY 1 cut(s) 650
BsrI ACTGG 1 cut(s) 435
BssAI RCCGGY 1 cut(s) 650
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 4 cut(s) 51, 323, 329, 373
BssT1I CCWWGG 1 cut(s) 188
Bst4CI ACNGT 4 cut(s) 152, 508, 521, 586
Bst6I CTCTTC 2 cut(s) 29, 105
BstBI TTCGAA 1 cut(s) 646
BstDEI CTNAG 3 cut(s) 259, 485, 511
BstENI CCTNNNNNAGG 1 cut(s) 381
BstF5I GGATG 1 cut(s) 73
BstFNI CGCG 2 cut(s) 111, 131
BstKTI GATC 4 cut(s) 54, 326, 332, 376
BstMAI GTCTC 2 cut(s) 2, 536
BstMBI GATC 4 cut(s) 51, 323, 329, 373
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstSFI CTRYAG 2 cut(s) 537, 621
BstUI CGCG 2 cut(s) 111, 131
BstV1I GCAGC 2 cut(s) 428, 607
BstV2I GAAGAC 1 cut(s) 451
BstX2I RGATCY 2 cut(s) 323, 373
BstXI CCANNNNNNTGG 1 cut(s) 603
BstYI RGATCY 2 cut(s) 323, 373
BsuRI GGCC 1 cut(s) 118
BtgZI GCGATG 1 cut(s) 397
BtsCI GGATG 1 cut(s) 73
CciI TCATGA 1 cut(s) 355
Cfr10I RCCGGY 1 cut(s) 650
Cfr13I GGNCC 1 cut(s) 192
CspAI ACCGGT 1 cut(s) 650
CviAII CATG 3 cut(s) 317, 356, 370
CviJI RGCY 6 cut(s) 118, 258, 401, 574, 620, 631
CviKI_1 RGCY 6 cut(s) 118, 258, 401, 574, 620, 631
DdeI CTNAG 3 cut(s) 259, 485, 511
DpnI GATC 4 cut(s) 53, 325, 331, 375
DpnII GATC 4 cut(s) 51, 323, 329, 373
EaeI YGGCCR 1 cut(s) 116
Eam1104I CTCTTC 2 cut(s) 29, 105
EarI CTCTTC 2 cut(s) 29, 105
EciI GGCGGA 1 cut(s) 70
Ecl136II GAGCTC 1 cut(s) 401
Eco130I CCWWGG 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 403
Eco47I GGWCC 1 cut(s) 192
Eco53kI GAGCTC 1 cut(s) 401
Eco57I CTGAAG 1 cut(s) 246
EcoICRI GAGCTC 1 cut(s) 401
EcoNI CCTNNNNNAGG 1 cut(s) 381
EcoT14I CCWWGG 1 cut(s) 188
EcoT38I GRGCYC 1 cut(s) 403
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 3 cut(s) 320, 359, 373
FaiI YATR 8 cut(s) 281, 318, 357, 371, 391, 437, 451, 598
FatI CATG 3 cut(s) 316, 355, 369
FauI CCCGC 1 cut(s) 116
FblI GTMKAC 1 cut(s) 666
Fnu4HI GCNGC 4 cut(s) 84, 292, 417, 621
FokI GGATG 1 cut(s) 60
FriOI GRGCYC 1 cut(s) 403
Fsp4HI GCNGC 4 cut(s) 84, 292, 417, 621
FspBI CTAG 2 cut(s) 327, 335
GluI GCNGC 4 cut(s) 84, 292, 417, 621
HaeIII GGCC 1 cut(s) 118
HapII CCGG 2 cut(s) 617, 651
Hin1II CATG 3 cut(s) 320, 359, 373
HinfI GANTC 3 cut(s) 90, 126, 462
HpaII CCGG 2 cut(s) 617, 651
HphI GGTGA 2 cut(s) 35, 626
Hpy166II GTNNAC 2 cut(s) 563, 667
Hpy188I TCNGA 4 cut(s) 163, 196, 253, 267
Hpy188III TCNNGA 5 cut(s) 49, 123, 224, 327, 356
Hpy8I GTNNAC 2 cut(s) 563, 667
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 4 cut(s) 152, 508, 521, 586
HpyCH4V TGCA 3 cut(s) 200, 623, 641
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 3 cut(s) 259, 485, 511
Hsp92II CATG 3 cut(s) 320, 359, 373
Kzo9I GATC 4 cut(s) 51, 323, 329, 373
LmnI GCTCC 1 cut(s) 398
LpnPI CCDG 6 cut(s) 237, 390, 416, 589, 630, 664
Lsp1109I GCAGC 2 cut(s) 428, 607
LweI GCATC 6 cut(s) 149, 160, 187, 303, 471, 669
MaeI CTAG 2 cut(s) 327, 335
MaeIII GTNAC 1 cut(s) 152
MalI GATC 4 cut(s) 53, 325, 331, 375
MbiI CCGCTC 1 cut(s) 86
MboI GATC 4 cut(s) 51, 323, 329, 373
MboII GAAGA 7 cut(s) 16, 92, 175, 239, 453, 456, 512
MflI RGATCY 2 cut(s) 323, 373
MhlI GDGCHC 2 cut(s) 403, 554
MnlI CCTC 6 cut(s) 49, 56, 88, 297, 624, 650
MroXI GAANNNNTTC 2 cut(s) 219, 630
MseI TTAA 1 cut(s) 135
MslI CAYNNNNRTG 1 cut(s) 360
MspI CCGG 2 cut(s) 617, 651
MvnI CGCG 2 cut(s) 111, 131
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeII GATC 4 cut(s) 51, 323, 329, 373
NlaIII CATG 3 cut(s) 320, 359, 373
NlaIV GGNNCC 5 cut(s) 222, 285, 375, 594, 612
NspV TTCGAA 1 cut(s) 646
PagI TCATGA 1 cut(s) 355
PcsI WCGNNNNNNNCGW 1 cut(s) 121
PdmI GAANNNNTTC 2 cut(s) 219, 630
PfeI GAWTC 3 cut(s) 90, 126, 462
PinAI ACCGGT 1 cut(s) 650
PkrI GCNGC 4 cut(s) 85, 293, 418, 622
Psp124BI GAGCTC 1 cut(s) 403
PspN4I GGNNCC 5 cut(s) 222, 285, 375, 594, 612
PspPI GGNCC 1 cut(s) 192
PstI CTGCAG 1 cut(s) 625
PsuI RGATCY 2 cut(s) 323, 373
RseI CAYNNNNRTG 1 cut(s) 360
SacI GAGCTC 1 cut(s) 403
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 4 cut(s) 84, 292, 417, 621
Sau3AI GATC 4 cut(s) 51, 323, 329, 373
Sau96I GGNCC 1 cut(s) 192
SduI GDGCHC 2 cut(s) 403, 554
SetI ASST 6 cut(s) 35, 48, 388, 403, 576, 639
SfaNI GCATC 6 cut(s) 149, 160, 187, 303, 471, 669
SfcI CTRYAG 2 cut(s) 537, 621
SfuI TTCGAA 1 cut(s) 646
SinI GGWCC 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 360
SmlI CTYRAG 1 cut(s) 381
SmoI CTYRAG 1 cut(s) 381
SsiI CCGC 6 cut(s) 81, 84, 109, 131, 292, 590
SspMI CTAG 2 cut(s) 327, 335
SstI GAGCTC 1 cut(s) 403
StyI CCWWGG 1 cut(s) 188
TaaI ACNGT 4 cut(s) 152, 508, 521, 586
TaqI TCGA 2 cut(s) 88, 646
TauI GCSGC 2 cut(s) 86, 294
TfiI GAWTC 3 cut(s) 90, 126, 462
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TseI GCWGC 2 cut(s) 416, 620
TspDTI ATGAA 2 cut(s) 344, 372
VpaK11BI GGWCC 1 cut(s) 192
XagI CCTNNNNNAGG 1 cut(s) 381
XbaI TCTAGA 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 666
XmnI GAANNNNTTC 2 cut(s) 219, 630
XspI CTAG 2 cut(s) 327, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.