Rroxscaffold_6G00410880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0008404
Physical Location & Seq
Reverse (-)
33324338 .. 33329173
4836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00410880.1

Sequence Viewer

Length: 873 bp
ATGATGACACCCCCAAACCTCAAGGCTCCACGTGGGCATCCACCACATGTGGCGTCAGACTCGCCTCCTTTCCTCCTCCTTGTTCTTTCCATTTCTCCCTCTTTCTTTCCTCCTCCGATTCCCCCAAAAGTCTCAATCTCCTATTCCTTTCTGCAATTCCTTTTCTCTCTCTCCAATGGCGGAAGCTTCCGCTGCTCTCTGCTTCTCCCCTTCTCTCCTTCCTTCTCTCCCGCCAAGCATCCCTGTCTCTCTTCTTTCTCCCGCGCTTTTTCTCCCAATTCCATAATTTCCCATCCTTGCCCCTCCCGCCTCCTCCGCTTTCCCGCCAAATCCTCCTCCGATTCCCTCCCCGACGACCTCTTCAGCTTCTTTCCCTGGTCCAATGACTCCGAAATTCAATGGGTTCCTGAGGACAGAGTCACATTGTTCACTTCTGAGGGACTTGTTCAGATTGGAGGTTCTATAGTCCCTCGCCGTGTCGCTTCTTCGGATAAGAAGAGGTCAAAGACTAGTCAAAGATATCAGCGGTTTCAAGAGAGTGATTATATGGATACAGAGCAGGGTCTGTGTCTGGGTGCTCTCTTTGACATTGCGGCAACAAATGGACTTGATATGGGCAGGAGGCTTTGTATACTTGGGTTTTGCCGTTCCATTGAGATGCTAAGCGATGTTGTGGAAGACACTGTGTTGGAACATGGCGGGGAGGTACGTCCTGGTGCCATGTTCTGCAGCACTGGACATGAGACTGCTAAGAATGACGGTTGCGGTACCATTACTTTGGGGGTTCCTCCTGCTTCTGAAACCCTTCACCTTGCTGTTAAGAGTGGCGGAGGAATTGTAGATAAGGTTTATTGGCAGTGGGATTTTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

290

Amino Acids

31.75

Weight (kDa)

6.38

Isoelectric Point (pI)

54.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7811 PF25103 169 - 290 2.9e-48 Domain of unknown function (DUF7811)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 767
AccB1I GGYRCC 2 cut(s) 716, 767
AccI GTMKAC 1 cut(s) 631
AccII CGCG 1 cut(s) 264
AcsI RAATTY 1 cut(s) 393
AcuI CTGAAG 1 cut(s) 346
AcvI CACGTG 1 cut(s) 32
AcyI GRCGYC 1 cut(s) 53
AfaI GTAC 2 cut(s) 708, 769
AflIII ACRYGT 1 cut(s) 46
AgsI TTSAA 2 cut(s) 398, 533
AhlI ACTAGT 1 cut(s) 509
AjnI CCWGG 2 cut(s) 374, 712
AluBI AGCT 2 cut(s) 186, 366
AluI AGCT 2 cut(s) 186, 366
Alw21I GWGCWC 1 cut(s) 580
Alw26I GTCTC 3 cut(s) 136, 251, 737
AlwNI CAGNNNCTG 1 cut(s) 565
ApeKI GCWGC 2 cut(s) 192, 729
ApoI RAATTY 1 cut(s) 393
Asp700I GAANNNNTTC 1 cut(s) 804
Asp718I GGTACC 1 cut(s) 767
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 378
AsuHPI GGTGA 1 cut(s) 800
AvaII GGWCC 1 cut(s) 378
AxyI CCTNAGG 1 cut(s) 408
BanI GGYRCC 2 cut(s) 716, 767
BbrPI CACGTG 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 684
Bbv12I GWGCWC 1 cut(s) 580
BbvI GCAGC 2 cut(s) 179, 741
BccI CCATC 1 cut(s) 300
BceAI ACGGC 2 cut(s) 459, 630
BciT130I CCWGG 2 cut(s) 376, 714
BciVI GTATCC 1 cut(s) 544
BcoDI GTCTC 3 cut(s) 136, 251, 737
BcuI ACTAGT 1 cut(s) 509
BfaI CTAG 1 cut(s) 510
BfmI CTRYAG 2 cut(s) 462, 727
BfuI GTATCC 1 cut(s) 544
BisI GCNGC 3 cut(s) 193, 594, 730
BlpI GCTNAGC 1 cut(s) 662
BlsI GCNGC 3 cut(s) 194, 595, 731
Bme1390I CCNGG 2 cut(s) 376, 714
Bme18I GGWCC 1 cut(s) 378
BmgT120I GGNCC 1 cut(s) 378
BmiI GGNNCC 5 cut(s) 27, 405, 718, 769, 786
BmrFI CCNGG 2 cut(s) 376, 714
BmsI GCATC 3 cut(s) 46, 247, 648
BpiI GAAGAC 1 cut(s) 684
Bpu1102I GCTNAGC 1 cut(s) 662
BpuEI CTTGAG 1 cut(s) 5
BsaAI YACGTR 1 cut(s) 32
BsaHI GRCGYC 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 374
BsaXI ACNNNNNCTCC 4 cut(s) 613, 643, 822, 852
Bse1I ACTGG 1 cut(s) 739
Bse21I CCTNAGG 1 cut(s) 408
Bse3DI GCAATG 1 cut(s) 588
BseBI CCWGG 2 cut(s) 376, 714
BseDI CCNNGG 1 cut(s) 374
BseGI GGATG 3 cut(s) 37, 238, 292
BseMI GCAATG 1 cut(s) 588
BseMII CTCAG 2 cut(s) 399, 426
BseNI ACTGG 1 cut(s) 739
BseRI GAGGAG 4 cut(s) 65, 102, 302, 325
BseXI GCAGC 2 cut(s) 179, 741
Bsh1236I CGCG 1 cut(s) 264
BshNI GGYRCC 2 cut(s) 716, 767
BsiHKAI GWGCWC 1 cut(s) 580
BslFI GGGAC 2 cut(s) 452, 453
BsmAI GTCTC 3 cut(s) 136, 251, 737
BsmFI GGGAC 2 cut(s) 452, 453
Bsp1286I GDGCHC 1 cut(s) 580
Bsp1720I GCTNAGC 1 cut(s) 662
BspCNI CTCAG 2 cut(s) 400, 427
BspFNI CGCG 1 cut(s) 264
BspLI GGNNCC 5 cut(s) 27, 405, 718, 769, 786
BspMAI CTGCAG 1 cut(s) 731
BspT107I GGYRCC 2 cut(s) 716, 767
BsrDI GCAATG 1 cut(s) 588
BsrI ACTGG 1 cut(s) 739
BssECI CCNNGG 1 cut(s) 374
BssNAI GTATAC 1 cut(s) 632
BssNI GRCGYC 1 cut(s) 53
Bst1107I GTATAC 1 cut(s) 632
Bst2UI CCWGG 2 cut(s) 376, 714
Bst4CI ACNGT 2 cut(s) 685, 761
Bst6I CTCTTC 3 cut(s) 256, 365, 491
BstACI GRCGYC 1 cut(s) 53
BstBAI YACGTR 1 cut(s) 32
BstDEI CTNAG 4 cut(s) 408, 435, 662, 750
BstF5I GGATG 3 cut(s) 37, 238, 292
BstFNI CGCG 1 cut(s) 264
BstHHI GCGC 1 cut(s) 266
BstMAI GTCTC 3 cut(s) 136, 251, 737
BstMWI GCNNNNNNNGC 3 cut(s) 192, 306, 315
BstNI CCWGG 2 cut(s) 376, 714
BstNSI RCATGY 1 cut(s) 50
BstSCI CCNGG 2 cut(s) 374, 712
BstSFI CTRYAG 2 cut(s) 462, 727
BstUI CGCG 1 cut(s) 264
BstV1I GCAGC 2 cut(s) 179, 741
BstV2I GAAGAC 1 cut(s) 684
BstXI CCANNNNNNTGG 1 cut(s) 778
BstZ17I GTATAC 1 cut(s) 632
Bsu36I CCTNAGG 1 cut(s) 408
BsuI GTATCC 1 cut(s) 544
BtgZI GCGATG 1 cut(s) 681
BtsCI GGATG 3 cut(s) 37, 238, 292
BtsI GCAGTG 1 cut(s) 863
BtsIMutI CAGTG 3 cut(s) 681, 732, 863
CaiI CAGNNNCTG 1 cut(s) 565
CfoI GCGC 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 378
CseI GACGC 1 cut(s) 42
Csp6I GTAC 2 cut(s) 707, 768
CviAII CATG 4 cut(s) 47, 695, 721, 740
CviJI RGCY 4 cut(s) 26, 186, 366, 625
CviKI_1 RGCY 4 cut(s) 26, 186, 366, 625
CviQI GTAC 2 cut(s) 707, 768
DdeI CTNAG 4 cut(s) 408, 435, 662, 750
Eam1104I CTCTTC 3 cut(s) 256, 365, 491
EarI CTCTTC 3 cut(s) 256, 365, 491
EciI GGCGGA 2 cut(s) 195, 843
Eco32I GATATC 1 cut(s) 521
Eco47I GGWCC 1 cut(s) 378
Eco57I CTGAAG 1 cut(s) 346
Eco72I CACGTG 1 cut(s) 32
Eco81I CCTNAGG 1 cut(s) 408
EcoRII CCWGG 2 cut(s) 374, 712
EcoRV GATATC 1 cut(s) 521
FaeI CATG 4 cut(s) 50, 698, 724, 743
FaqI GGGAC 2 cut(s) 452, 453
FatI CATG 4 cut(s) 46, 694, 720, 739
FauI CCCGC 5 cut(s) 238, 269, 314, 331, 692
FblI GTMKAC 1 cut(s) 631
Fnu4HI GCNGC 3 cut(s) 193, 594, 730
FokI GGATG 3 cut(s) 24, 225, 279
Fsp4HI GCNGC 3 cut(s) 193, 594, 730
FspBI CTAG 1 cut(s) 510
GlaI GCGC 1 cut(s) 265
GluI GCNGC 3 cut(s) 193, 594, 730
HgaI GACGC 1 cut(s) 42
HhaI GCGC 1 cut(s) 266
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 4 cut(s) 50, 698, 724, 743
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HindIII AAGCTT 1 cut(s) 184
HinfI GANTC 5 cut(s) 59, 118, 341, 386, 417
HphI GGTGA 1 cut(s) 800
Hpy166II GTNNAC 2 cut(s) 429, 632
Hpy188I TCNGA 8 cut(s) 58, 117, 340, 391, 436, 450, 490, 799
Hpy188III TCNNGA 2 cut(s) 407, 533
Hpy8I GTNNAC 2 cut(s) 429, 632
Hpy99I CGWCG 1 cut(s) 356
HpyAV CCTTC 4 cut(s) 220, 228, 232, 815
HpyCH4III ACNGT 2 cut(s) 685, 761
HpyCH4IV ACGT 2 cut(s) 31, 709
HpyCH4V TGCA 2 cut(s) 154, 729
HpyF10VI GCNNNNNNNGC 3 cut(s) 192, 306, 315
HpyF3I CTNAG 4 cut(s) 408, 435, 662, 750
HpySE526I ACGT 2 cut(s) 31, 709
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 4 cut(s) 50, 698, 724, 743
HspAI GCGC 1 cut(s) 264
KpnI GGTACC 1 cut(s) 771
LmnI GCTCC 1 cut(s) 31
Lsp1109I GCAGC 2 cut(s) 179, 741
LweI GCATC 3 cut(s) 46, 247, 648
MaeI CTAG 1 cut(s) 510
MaeII ACGT 2 cut(s) 31, 709
MaeIII GTNAC 1 cut(s) 418
MboII GAAGA 5 cut(s) 243, 352, 477, 508, 689
MhlI GDGCHC 1 cut(s) 580
MluCI AATT 5 cut(s) 155, 277, 285, 393, 834
MlyI GAGTC 3 cut(s) 53, 380, 426
MmeI TCCRAC 1 cut(s) 669
MroXI GAANNNNTTC 1 cut(s) 804
MseI TTAA 1 cut(s) 819
MslI CAYNNNNRTG 1 cut(s) 656
MspA1I CMGCKG 2 cut(s) 192, 526
MspR9I CCNGG 2 cut(s) 376, 714
MvaI CCWGG 2 cut(s) 376, 714
MvnI CGCG 1 cut(s) 264
MwoI GCNNNNNNNGC 3 cut(s) 192, 306, 315
NlaIII CATG 4 cut(s) 50, 698, 724, 743
NlaIV GGNNCC 5 cut(s) 27, 405, 718, 769, 786
NmuCI GTSAC 1 cut(s) 418
NspI RCATGY 1 cut(s) 50
PciI ACATGT 1 cut(s) 46
PdmI GAANNNNTTC 1 cut(s) 804
PfeI GAWTC 2 cut(s) 118, 341
PflFI GACNNNGTC 1 cut(s) 416
PkrI GCNGC 3 cut(s) 194, 595, 731
PleI GAGTC 3 cut(s) 53, 380, 425
PmaCI CACGTG 1 cut(s) 32
PmlI CACGTG 1 cut(s) 32
PpsI GAGTC 3 cut(s) 53, 380, 425
Ppu21I YACGTR 1 cut(s) 32
PscI ACATGT 1 cut(s) 46
Psp6I CCWGG 2 cut(s) 374, 712
PspCI CACGTG 1 cut(s) 32
PspGI CCWGG 2 cut(s) 374, 712
PspN4I GGNNCC 5 cut(s) 27, 405, 718, 769, 786
PspPI GGNCC 1 cut(s) 378
PstI CTGCAG 1 cut(s) 731
PstNI CAGNNNCTG 1 cut(s) 565
PsyI GACNNNGTC 1 cut(s) 416
RsaI GTAC 2 cut(s) 708, 769
RsaNI GTAC 2 cut(s) 707, 768
RseI CAYNNNNRTG 1 cut(s) 656
SaqAI TTAA 1 cut(s) 819
SatI GCNGC 3 cut(s) 193, 594, 730
Sau96I GGNCC 1 cut(s) 378
SchI GAGTC 3 cut(s) 53, 380, 426
ScrFI CCNGG 2 cut(s) 376, 714
SduI GDGCHC 1 cut(s) 580
SfaNI GCATC 3 cut(s) 46, 247, 648
SfcI CTRYAG 2 cut(s) 462, 727
SinI GGWCC 1 cut(s) 378
SmiMI CAYNNNNRTG 1 cut(s) 656
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
SpeI ACTAGT 1 cut(s) 509
Sse9I AATT 5 cut(s) 155, 277, 285, 393, 834
SspMI CTAG 1 cut(s) 510
StyD4I CCNGG 2 cut(s) 374, 712
TaaI ACNGT 2 cut(s) 685, 761
TaiI ACGT 2 cut(s) 34, 712
TasI AATT 5 cut(s) 155, 277, 285, 393, 834
TauI GCSGC 1 cut(s) 596
TfiI GAWTC 2 cut(s) 118, 341
Tru1I TTAA 1 cut(s) 819
Tru9I TTAA 1 cut(s) 819
TscAI CASTG 3 cut(s) 688, 739, 863
TseFI GTSAC 1 cut(s) 418
TseI GCWGC 2 cut(s) 192, 729
Tsp45I GTSAC 1 cut(s) 418
TspRI CASTG 3 cut(s) 688, 739, 863
Tth111I GACNNNGTC 1 cut(s) 416
VpaK11BI GGWCC 1 cut(s) 378
XapI RAATTY 1 cut(s) 393
XceI RCATGY 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 631
XmnI GAANNNNTTC 1 cut(s) 804
XspI CTAG 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.